AtomicList              Lists of Atomic Vectors in Natural and Rle Form
AtomicList-utils        Common operations on AtomicList objects
CompressedHitsList-class
                        CompressedHitsList objects
CompressedList-class    CompressedList objects
DataFrame-utils         Common operations on DataFrame objects
DataFrameList-class     List of DataFrames
GappedRanges-class      GappedRanges objects (DEFUNCT!)
Grouping-class          Grouping objects
Hits-examples           Examples of basic manipulation of Hits objects
IRanges-class           IRanges and NormalIRanges objects
IRanges-constructor     The IRanges constructor and supporting
                        functions
IRanges-utils           IRanges utility functions
IRangesList-class       List of IRanges and NormalIRanges
MaskCollection-class    MaskCollection objects
NCList-class            Nested Containment List objects
RangedData-class        Data on ranges
RangedDataList-class    Lists of RangedData (DEFUNCT!)
RangedSelection-class   Selection of ranges and columns
Ranges-class            Ranges objects
Ranges-comparison       Comparing and ordering ranges
RangesList-class        List of Ranges
RleViews-class          The RleViews class
RleViewsList-class      List of RleViews
Views-class             Views objects
ViewsList-class         List of Views
bind-arrays             Bind arrays along their rows or columns
coverage-methods        Coverage of a set of ranges
extractList             Group elements of a vector-like object into a
                        list-like object
findOverlaps-methods    Finding overlapping ranges
inter-range-methods     Inter range transformations of a Ranges, Views,
                        RangesList, MaskCollection, or RangedData
                        object
intra-range-methods     Intra range transformations of a Ranges, Views,
                        RangesList, or MaskCollection object
multisplit              Split elements belonging to multiple groups
nearest-methods         Finding the nearest range neighbor
ranges,Rle-method       Rle objects (old man page)
rdapply                 Applying over spaces (DEFUNCT!)
read.Mask               Read a mask from a file
reverse                 reverse
setops-methods          Set operations on Ranges and RangesList objects
slice-methods           Slice a vector-like or list-like object
stack,List-method       List objects (old man page)
unsplit,List-method     2 methods that should be documented somewhere
                        else
view-summarization-methods
                        Summarize views on a vector-like object with
                        numeric values
window<-,Vector-method
                        Vector objects (old man page)