Infrastructure for manipulating intervals on sequences
Provides efficient low-level and highly reusable S4
	     classes for storing, manipulating and aggregating over annotated
             ranges of integers. Implements an algebra of range operations,
             including efficient algorithms for finding
             overlaps and nearest neighbors. Defines efficient
             list-like classes for storing, transforming and aggregating
             large grouped data, i.e., collections of atomic vectors and
             DataFrames.
R (>= 3.1.0), methods, utils, stats, BiocGenerics (>= 0.19.1),
S4Vectors (>= 0.11.19)
XVector, GenomicRanges, GenomicFeatures, GenomicAlignments,
BSgenome.Celegans.UCSC.ce2, RUnit
Vector-class-leftovers.R List-class-leftovers.R
AtomicList-class.R Ranges-class.R subsetting-utils.R
Ranges-comparison.R IRanges-class.R IRanges-constructor.R
IRanges-utils.R Grouping-class.R CompressedList-class.R
CompressedList-comparison.R Views-class.R Rle-class-leftovers.R
RleViews-class.R RleViews-utils.R extractList.R seqapply.R
multisplit.R AtomicList-impl.R AtomicList-utils.R
ListGrouping-class.R Hits-class-leftovers.R DataFrame-utils.R
DataFrameList-class.R DataFrameList-utils.R RangesList-class.R
GappedRanges-class.R ViewsList-class.R RleViewsList-class.R
RleViewsList-utils.R MaskCollection-class.R RangedData-class.R
RDApplyParams-class.R RangedData-utils.R
CompressedHitsList-class.R NCList-class.R
RangedSelection-class.R read.Mask.R findOverlaps-methods.R
intra-range-methods.R inter-range-methods.R reverse-methods.R
coverage-methods.R slice-methods.R setops-methods.R
nearest-methods.R cbind-Rle-methods.R tile-methods.R
bind-arrays.R zzz.R