format-version: 1.2
ontology: http://www.ebi.ac.uk/swo/
idspace: IAO http://purl.obolibrary.org/obo/IAO_ ""
idspace: OBI http://purl.obolibrary.org/obo/OBI_ ""
idspace: OBO_REL http://www.obofoundry.org/ro/ro.owl# ""
idspace: owl http://www.w3.org/2002/07/owl# ""
idspace: snap http://www.ifomis.org/bfo/1.1/snap# ""
idspace: span http://www.ifomis.org/bfo/1.1/span# ""

[Term]
id: IAO:0000005
name: objective specification
namespace: IAO
def: "A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved." []
is_a: IAO:0000030  ! information artifact

[Term]
id: IAO:0000025
name: programming language
namespace: IAO
def: "A language in which source code is written, intended to executed/run by a software interpreter. Programming languages are ways to write instructions that specify what to do, and sometimes, how to do it." []
is_a: IAO:0000030  ! information artifact

[Term]
id: IAO:0000027
name: data
namespace: IAO
def: "Data is an information entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements." []
is_a: IAO:0000030  ! information artifact

[Term]
id: IAO:0000030
name: information artifact
namespace: IAO
def: "Information is a statement about some entity." []
synonym: "information" EXACT []
disjoint_from: http://www.geneontology.org/formats/oboInOwl#ObsoleteClass  ! obsolete class

[Term]
id: IAO:0000064
name: algorithm
namespace: IAO
def: "Algorithm is a specification which describes inputs, outputs of mathematical functions as well as workflow of execution for achieving a predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata." []
is_a: IAO:0000030  ! information artifact

[Term]
id: IAO:0000098
name: data format specification
namespace: IAO
def: "A data format specification is the information content borne by the document published defining the specification. Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file" []
is_a: IAO:0000030  ! information artifact

[Term]
id: IAO:0000129
name: version name or number
namespace: IAO
def: "A number or name assigned to a piece of software used to identify a specific state of software." []
is_a: IAO:0000030  ! information artifact

[Term]
id: OBI:0000245
name: organization
namespace: OBI
is_a: snap:MaterialEntity  ! material entity

[Term]
id: OBI:0000425
name: averaging objective
namespace: OBI
def: "An averaging objective is a data transformation objective where the aim is to perform mean calculations on the input of the data transformation." []
is_a: IAO:0000005  ! objective specification

[Term]
id: OBI:0000704
name: decision tree induction objective
namespace: OBI
def: "A decision tree induction objective is a data transformation objective in which a tree-like graph of edges and nodes is created and from which the selection of each branch requires that some type of logical decision is made." []
is_a: IAO:0000005  ! objective specification

[Term]
id: OBI:0200005
name: feature extraction objective
namespace: OBI
def: "A feature extraction objective is a data transformation objective where the aim of the data transformation is to generate quantified values from a scanned image." []
is_a: IAO:0000005  ! objective specification

[Term]
id: OBI:0200031
name: differential expression analysis objective
namespace: OBI
is_a: IAO:0000005  ! objective specification

[Term]
id: OBI:0200078
name: descriptive statistical calculation objective
namespace: OBI
def: "A descriptive statistical calculation objective is a data transformation objective which concerns any calculation intended to describe a feature of a data set, for example, its center or its variability." []
is_a: IAO:0000005  ! objective specification

[Term]
id: OBI:0200167
name: data normalization objective
namespace: OBI
def: "A normalization objective is a data transformation objective where the aim is to remove systematic sources of variation to put the data on equal footing in order to create a common base for comparisons." []
is_a: IAO:0000005  ! objective specification

[Term]
id: OBI:0200168
name: correction objective
namespace: OBI
def: "A correction objective is a data transformation objective where the aim is to correct for error, noise or other impairments to the input of the data transformation or derived from the data transformation itself." []
is_a: IAO:0000005  ! objective specification

[Term]
id: OBI:0200173
name: background correction objective
namespace: OBI
def: "A background correction objective is a data transformation objective where the aim is to remove irrelevant contributions from the measured signal, e.g. those due to instrument noise or sample preparation." []
is_a: OBI:0200168  ! correction objective

[Term]
id: OBI:0200174
name: curve fitting objective
namespace: OBI
def: "A curve fitting objective is a data transformation objective in which the aim is to find a curve which matches a series of data points and possibly other constraints." []
is_a: IAO:0000005  ! objective specification

[Term]
id: OBI:0200177
name: center calculation objective
namespace: OBI
def: "A center calculation objective is a data transformation objective where the aim is to calculate the center of an input data set." []
is_a: IAO:0000005  ! objective specification

[Term]
id: OBI:0200178
name: class discovery objective
namespace: OBI
def: "A class discovery objective (sometimes called unsupervised classification) is a data transformation objective where the aim is to organize input data  (typically vectors of attributes) into classes, where the number of classes and their specifications are not known a priori. Depending on usage, the class assignment can be definite or probabilistic." []
is_a: IAO:0000005  ! objective specification

[Term]
id: OBI:0200179
name: class prediction objective
namespace: OBI
def: "A class prediction objective (sometimes called supervised classification) is a data transformation objective where the aim is to create a predictor from training data through a machine learning technique. The training data consist of pairs of objects (typically vectors of attributes) and class labels for these objects. The resulting predictor can be used to attach class labels to any valid novel input object. Depending on usage, the prediction can be definite or probabilistic. A classification is learned from the training data and can then be tested on test data." []
is_a: IAO:0000005  ! objective specification

[Term]
id: OBI:0200186
name: error correction objective
namespace: OBI
def: "An error correction objective is a data transformation objective where the aim is to remove (correct for) erroneous contributions arising from the input data, or the transformation itself." []
is_a: OBI:0200168  ! correction objective

[Typedef]
id: OBI:0000293
name: has_specified_input
namespace: OBI
def: "The input to a process. [Adapted from original by James Malone]" []

[Typedef]
id: OBI:0000295
name: is_specified_input_of
namespace: OBI
inverse_of: OBI:0000293  ! has_specified_input

[Typedef]
id: OBI:0000299
name: has specified output
namespace: OBI
def: "The output of a process. [Adapted from original by James Malone]" []

[Typedef]
id: OBI:0000304
name: is_manufactured_by
namespace: OBI
range: OBI:0000245  ! organization

[Typedef]
id: OBI:0000312
name: is_specified_output_of
namespace: OBI
inverse_of: OBI:0000299  ! has specified output

[Typedef]
id: OBI:0000316
name: has_role
namespace: OBI
range: snap:Role  ! role

[Typedef]
id: OBI:0000417
name: achieves objective
namespace: OBI
def: "The relationship betwee a process and the objective which the process achieves. [Adapted from original by James Malone]" []
range: IAO:0000005  ! objective specification

[Typedef]
id: OBO_REL:has_part
name: has part
namespace: OBO_REL
is_transitive: true

[Typedef]
id: OBO_REL:part_of
name: part of
namespace: OBO_REL
is_transitive: true
inverse_of: OBO_REL:has_part  ! has part

[Typedef]
id: OBO_REL:preceded_by
name: preceded by
namespace: OBO_REL
is_transitive: true
inverse_of: OBO_REL:precedes  ! followed by

[Typedef]
id: OBO_REL:precedes
name: followed by
namespace: OBO_REL
is_transitive: true

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM-KDD_511616
name: data visualization algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM-KDD_521641
name: data visualization algorithm execution
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_147247  ! algorithm execution

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM-KDD_524003
name: data processing algorithm execution
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_147247  ! algorithm execution

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM-KDD_545286
name: data cleaning algorithm
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_361570  ! data processing algorithm

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM-KDD_573276
name: data selection algorithm
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_361570  ! data processing algorithm

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM-KDD_776185
name: data integration algorithm
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_361570  ! data processing algorithm

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM-KDD_778151
name: data processing task
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_757135  ! information processing objective

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM-KDD_798363
name: data mining algorithm execution
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_147247  ! algorithm execution

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM-KDD_806059
name: data construction algorithm
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_361570  ! data processing algorithm

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_000034
name: generalization specification
namespace: http
is_a: IAO:0000030  ! information artifact

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_000037
name: ensemble specification
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_000034  ! generalization specification

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_000038
name: data mining algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_000078
name: pattern specification
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_419460  ! single generalization specification

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_000087
name: probability distribution estimation task
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_000098  ! data mining task

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_000092
name: pattern discovery task
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_000098  ! data mining task

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_000098
name: data mining task
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_757135  ! information processing objective

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_000228
name: predictive model specification
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_419460  ! single generalization specification

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_000235
name: predictive modeling task
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_000098  ! data mining task

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_000253
name: probability distribution estimation algorithm
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_731692  ! single generalization algorithm

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_000264
name: clustering task
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_000098  ! data mining task

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_000285
name: probability distribution specification
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_419460  ! single generalization specification

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_147247
name: algorithm execution
namespace: http
is_a: span:ProcessualEntity  ! process

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_361570
name: data processing algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_419460
name: single generalization specification
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_000034  ! generalization specification

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_530819
name: ensemble algorithm
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_000038  ! data mining algorithm
disjoint_from: http://kt.ijs.si/panovp/OntoDM#OntoDM_731692  ! single generalization algorithm

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_731692
name: single generalization algorithm
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_000038  ! data mining algorithm
disjoint_from: http://kt.ijs.si/panovp/OntoDM#OntoDM_530819  ! ensemble algorithm

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_757135
name: information processing objective
namespace: http
is_a: IAO:0000005  ! objective specification

[Term]
id: http://kt.ijs.si/panovp/OntoDM#OntoDM_953101
name: data visualization task
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_757135  ! information processing objective

[Term]
id: http://www.ebi.ac.uk/EDAM/EDAM:0001478
name: pdbml
namespace: http
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000005  ! XML

[Term]
id: http://www.ebi.ac.uk/EDAM/EDAM:0001665
name: Taverna workflow format
namespace: http
def: "Format of Taverna workflows." []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000005  ! XML

[Term]
id: http://www.ebi.ac.uk/EDAM/EDAM:0002331
name: html
namespace: http
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000013  ! web page specification

[Term]
id: http://www.ebi.ac.uk/efo/swo/Class_6
name: matlab software
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000003
name: 2-sample pooled t-test
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000004
name: 50-50 MANOVA
namespace: http
def: "50-50 Manova is software in which the 50-50 MANOVA algorithm is implemented." []
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000398 ! 50-50 MANOVA algorithm
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000274 ! MATLAB language
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000005
name: ABarray
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 http://www.ebi.ac.uk/efo/swo/SWO_0000553 ! gene expression analysis objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000014 ! 'ANOVA'
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000145 ! 'FDR'
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000597 ! local-pooled-error
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000715 ! 't-test'
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000006
name: 'ACME'
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000007
name: Algorithms for Calculating Microarray Enrichment
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000661 ! graph plot
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000008
name: Affymetrix Expression Console
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000328 ! PLIER (Probe Logarithmic Error Intensity Estimate) method
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000340 ! RMA
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000614 ! 'MAS5'

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000009
name: AIDA
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000010
name: average log expression across arrays (ALE)
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000011
name: ALL/AML data set
namespace: http
is_a: IAO:0000027  ! data

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000012
name: AMDIS
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000013
name: ANCOVA
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000014
name: 'ANOVA'
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000015
name: AP-MS data
namespace: http
is_a: IAO:0000027  ! data

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000016
name: ARACNE algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000017
name: ARR
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000018
name: AWS algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000019
name: Absolute Expression Analysis
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000297  ! MicroArraySuite 4.0

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000020
name: Absolute Expression Analysis
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000272  ! MicroArraySuite 5.0

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000021
name: 'AffyCompatible'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 http://www.ebi.ac.uk/efo/swo/SWO_0000648 ! parse objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000022
name: 'AffyExpress'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200031 ! differential expression analysis objective
relationship: OBI:0000417 OBI:0200167 ! data normalization objective
relationship: OBI:0000417 OBI:0200168 ! correction objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000014 ! 'ANOVA'
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000024
name: Affymetrix GCOS v1.2
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000025  ! Affymetrix GeneChip Operating Software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000025
name: Affymetrix GeneChip Operating Software
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000026
name: Affymetrix Software
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000027
name: 'Agi4x44PreProcess'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200031 ! differential expression analysis objective
relationship: OBI:0000417 OBI:0200167 ! data normalization objective
relationship: OBI:0000417 OBI:0200168 ! correction objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000264 ! Loess algorithm
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000028
name: Agilent Feature Extraction 5.1.1
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000147  ! Agilent Feature Extraction Software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000029
name: Agilent Feature Extraction software version 7.1
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000147  ! Agilent Feature Extraction Software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000030
name: Agilent Feature Extraction software version 7.5
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000147  ! Agilent Feature Extraction Software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000031
name: Agilent Feature Extraction software version A.5.1.1
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000147  ! Agilent Feature Extraction Software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000032
name: Agilent Scan Control
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000034
name: Agilent Technologies Software
namespace: http
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[Term]
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namespace: http
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: Applied Biosystems 1700 Expression Array System Software
namespace: http
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[Term]
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name: ArrayGauge
namespace: http
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[Term]
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name: ArrayNorm
namespace: http
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[Term]
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namespace: http
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relationship: OBI:0000417 OBI:0200031 ! differential expression analysis objective
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[Term]
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name: ArrayVision
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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namespace: http
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[Term]
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name: Array_vision_(Interfocus)
namespace: http
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[Term]
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name: AtlasImage
namespace: http
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[Term]
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name: Axon GenePix Pro 3
namespace: http
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[Term]
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namespace: http
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[Term]
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name: Binning clustering method
namespace: http
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[Term]
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name: 'BCRANK'
namespace: http
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[Term]
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name: BED file
namespace: http
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[Term]
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name: BGL
namespace: http
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[Term]
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name: 'BGmix'
namespace: http
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relationship: OBI:0000417 OBI:0200031 ! differential expression analysis objective
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[Term]
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name: BLAST
namespace: http
def: "BLAST, or Basic Local Alignment Search Tool in full, is an algorithm for comparing primary biological sequence information, such as the amino-acid  sequences of different proteins or the nucleotides  of DNA sequences." []
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: iterative Bayesian Model Averaging (BMA)
namespace: http
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[Term]
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name: Base-Pair-Distance Kernel
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: BPMAP
namespace: http
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[Term]
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name: BRB-ArrayTools
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: 'BSgenome'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: BZScan
namespace: http
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[Term]
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name: BaldiLongT
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: BasReader 3.01
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: Bayesian Model
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Beadstudio
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000066
name: 'BicARE'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: 'BioMVCClass'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: 'Biobase'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: 'BiocCaseStudies'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000072
name: BioConductor Software
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: 'Biostrings'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000076
name: BlueFuse
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: 'BufferedMatrix'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000078
name: 'BufferedMatrixMethods'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000079
name: 'CALIB'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200031 ! differential expression analysis objective
relationship: OBI:0000417 OBI:0200167 ! data normalization objective
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[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000080
name: 'CAMERA'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000081
name: CBS
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000082
name: CBS algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000083
name: CDF
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000084
name: CEL
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000085
name: 'CGHbase'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0000425 ! averaging objective
relationship: OBI:0000417 OBI:0200167 ! data normalization objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000086
name: 'CGHcall'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0000425 ! averaging objective
relationship: OBI:0000417 OBI:0200078 ! descriptive statistical calculation objective
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[Term]
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name: 'CGHregions'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000088
name: CHP file
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000089
name: CLR algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000090
name: 'CMA'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000091
name: CMA
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000092
name: 'CORREP'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200031 ! differential expression analysis objective
relationship: OBI:0000417 OBI:0200078 ! descriptive statistical calculation objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000094
name: CRLMM algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000095
name: Continuous Wavelet Transform (CWT)-based peak detection algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000096
name: CARMAweb
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000097
name: Category analysis
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000098
name: 'Category'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
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[Term]
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name: 'ChemmineR'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: ChipReader 3.1
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000101
name: ChipSkipper
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000102
name: ChipSkipper V0.99
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000101  ! ChipSkipper

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000103
name: multiscan
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000104
name: affy
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000105
name: affycomp
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000117 ! csv data set
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000106
name: PCMG
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000107
name: Feature Extraction Software
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000025  ! Affymetrix GeneChip Operating Software
relationship: OBI:0000417 OBI:0200005 ! feature extraction objective

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000108
name: chi-square
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000109
name: Annotation-Driven Clustering
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: distance calculation objective
namespace: http
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[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000111
name: R software
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: BCRANK
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: cosmo
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: F test
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: MAGE-TAB inputting software
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: text data set
namespace: http
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[Term]
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name: csv data set
namespace: http
is_a: IAO:0000027  ! data

[Term]
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name: non-linear functional regression model
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000120
name: 'CoCiteStats'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200078 ! descriptive statistical calculation objective
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000121
name: CodeLink Expression Analysis Software
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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name: Cyber-T
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: 'DEDS'
namespace: http
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[Term]
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name: 'DFP'
namespace: http
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[Term]
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name: Discriminant Fuzzy Pattern Algorithm
namespace: http
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[Term]
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name: DFW
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: digital gene expression (DGE) datasets
namespace: http
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[Term]
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name: 'DNAcopy'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: 'DynDoc'
namespace: http
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[Term]
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name: 'EBImage'
namespace: http
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[Term]
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name: 'EBarrays'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200031 ! differential expression analysis objective
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[Term]
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name: Expectation-Maximization(EM) algorithm
namespace: http
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[Term]
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name: Empirical Bayes rule
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Expert 2100
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: FACS ( fluorescence-activated cell sorter)
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: FACS data
namespace: http
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[Term]
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name: FARMS
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: FASTA
namespace: http
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[Term]
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name: FC
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: FCS
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
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name: 'FDR'
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Fixed effect model
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Agilent Feature Extraction Software
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200005 ! feature extraction objective

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000148
name: Firth's bias reduction procedure
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Fischer's Exact Test
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: FoxDimmicT
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: GACK
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: GASSCO method
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000154
name: GC-RMA Quantification
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: GEMTools 2.4
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: GEO data type
namespace: http
is_a: IAO:0000027  ! data

[Term]
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name: GEO Matrix Series file
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000158
name: GEOmetadb
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: GEOquery
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: GGBase
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: Gamma Gamma Model
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000163
name: GGtools
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: GLAD
namespace: http
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: modied version of the GLAD algorithm (Gain and Loss Analysis of DNA)
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: GLEAMS software
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000167
name: GMS
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000168
name: GOstats
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200031 ! differential expression analysis objective
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000715 ! 't-test'
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000169
name: Gene Recommender algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000170
name: GSEABase
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000171
name: GSEAlm
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200078 ! descriptive statistical calculation objective
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: Gamma-Gamma hierarchical model
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000173
name: Gaussian locally weighted regression
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000174
name: Gene-Set Enrichment Analysis
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000175
name: GeneData Expressionist Analyst v4.0.5
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000176
name: Gene Pix
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: GenePix 3.0.6
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000176  ! Gene Pix

[Term]
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name: GenePix 4.1
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000176  ! Gene Pix

[Term]
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name: GenePix 4100A
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000181  ! GenePix

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000180
name: GenePix 5.0.1
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000176  ! Gene Pix

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000181
name: GenePix
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000176  ! Gene Pix

[Term]
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name: GenePix Pro
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000176  ! Gene Pix

[Term]
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name: GenePix Pro 3
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000182  ! GenePix Pro

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000184
name: GenePix Pro 5.0
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000182  ! GenePix Pro

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000185
name: GenePix Pro 6.0
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000182  ! GenePix Pro

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000186
name: GenePix Pro 6 [Axon Instruments]
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000187  ! GenePix Pro [Axon Instruments]

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000187
name: GenePix Pro [Axon Instruments]
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000182  ! GenePix Pro

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000188
name: GeneR
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000189
name: GeneRegionScan
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000190
name: GeneRfold
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000191
name: GeneSelectMMD
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200031 ! differential expression analysis objective
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000192
name: GeneSelector
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000595 ! Linear modelling
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: GeneSpring
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: GeneSpringGX
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000193  ! GeneSpring

[Term]
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name: GeneTac Analyser
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: GeneTraffic
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: GenePix Pro 4.0
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000182  ! GenePix Pro

[Term]
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name: GenePix Pro 3.0
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000182  ! GenePix Pro

[Term]
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name: GeneticsBase
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000202
name: GeneticsDesign
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000203
name: GeneticsPed
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000298 ! Mixed model equations
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000205
name: GenomeGraphs
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: GlobalAncova
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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relationship: OBI:0000417 OBI:0200078 ! descriptive statistical calculation objective
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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name: GraphAlignment
namespace: http
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[Term]
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name: GridGrinder
namespace: http
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[Term]
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name: hexagon binning algorithm
namespace: http
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[Term]
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name: HELP
namespace: http
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relationship: OBI:0000417 OBI:0200173 ! background correction objective
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[Term]
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name: HEM
namespace: http
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[Term]
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name: Heterogeneous Error Model (HEM)
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Hubert’s gamma
namespace: http
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[Term]
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name: Hidden Markov Model
namespace: http
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[Term]
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namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Hidden Variable Dynamic Modelling HVDM)
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: HaarSeg algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Hardy-Weinberg equilibrium
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Harshlight
namespace: http
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[Term]
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name: Heatplus
namespace: http
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[Term]
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name: HilbertVis
namespace: http
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relationship: OBI:0000417 OBI:0200167 ! data normalization objective
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[Term]
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name: HilbertVisGUI
namespace: http
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[Term]
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name: Hypergeometric probability
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: ICS-501 (version 2.3) Image Capture System
namespace: http
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[Term]
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name: Iteratively ReWeighted Least Squares
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: IRanges
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0000704 ! decision tree induction objective
relationship: OBI:0000417 OBI:0200167 ! data normalization objective
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[Term]
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name: ITALICS
namespace: http
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relationship: OBI:0000417 OBI:0200167 ! data normalization objective
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[Term]
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name: ILLUMINA data
namespace: http
is_a: IAO:0000027  ! data

[Term]
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name: ImaGene4.1 software
namespace: http
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[Term]
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name: ImaGene 3.0
namespace: http
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[Term]
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name: ImageQuant
namespace: http
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[Term]
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name: ImageReader
namespace: http
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[Term]
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name: ImaGene
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: Imagene v4.0
namespace: http
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[Term]
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name: Initial microarray data processing (data filtering, local normalisation and quality control)
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: Jaccard’s index
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Jaguar
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: KCsmart
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200167 ! data normalization objective
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[Term]
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name: KEGGSOAP
namespace: http
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[Term]
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name: KEGGgraph
namespace: http
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[Term]
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name: KGML file
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
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name: 'KLD'
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: LBE
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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[Term]
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name: LC-MS data
namespace: http
is_a: IAO:0000027  ! data

[Term]
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name: LMGene
namespace: http
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[Term]
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name: Locally Moderated Weighted-t (LMW) method
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Lognormal Normal Model
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Lognormal Normal with Modied Variance Model
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: LPE
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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[Term]
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name: LPEadj
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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[Term]
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namespace: http
def: "A publisher role is a role borne by an organization or individual in which they are responsible for making software available to a particular consumer group. Such organizations or individuals do need to be involved in the development of the software." []
is_a: snap:Role  ! role

[Term]
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name: Langmuir Isotherm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Laplace mixture model
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Library Search Algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Loess algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Logic regression
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: MAANOVA v1.2 package for MATLAB
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: Median Average Difference Algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: MAGE-ML files
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
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name: MANOR
namespace: http
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[Term]
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name: MAQC data
namespace: http
is_a: IAO:0000027  ! data

[Term]
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name: MIcroarray Analysis Suite
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: MicroArraySuite 5.0
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000271  ! MIcroarray Analysis Suite

[Term]
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name: MATLAB
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: MATLAB language
namespace: http
is_a: IAO:0000025  ! programming language

[Term]
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name: MAVI Pro
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: Multivariate correlation estimator
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Markov Chain Monte Carlo
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: MCR algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: MCRestimate
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: MEDME
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: 'MI'
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000282
name: mutual information matrix (MIM)
namespace: http
is_a: IAO:0000027  ! data

[Term]
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name: MLInterfaces
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000589 ! k-nearest neighbour classification
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[Term]
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name: MMD
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: MVCClass
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 http://www.ebi.ac.uk/efo/swo/SWO_0000724 ! data visualization objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: Mahalanobis distance
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000288
name: MantelCorr
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200031 ! differential expression analysis objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000588 ! k-means
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: MassSpecWavelet
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000095 ! Continuous Wavelet Transform (CWT)-based peak detection algorithm
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: MeasurementError.cor
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200078 ! descriptive statistical calculation objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000722 ! two-stage measurement error model
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: MergeMaid
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000294
name: Mfuzz
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000500 ! clustering algorithm
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000295
name: MiPP
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200167 ! data normalization objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000296 ! Misclassification-Penalized Posteriors (MiPP)
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: Misclassification-Penalized Posteriors (MiPP)
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000297
name: MicroArraySuite 4.0
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000271  ! MIcroarray Analysis Suite

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000298
name: Mixed model equations
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000304
name: 'Needleman-Wunsch'
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000305
name: Nested Effects Models
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000306
name: Nonlinear Estimation by Iterative Partial Least Squares
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: OCplus
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000308
name: OLIN
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200167 ! data normalization objective
relationship: OBI:0000417 OBI:0200168 ! correction objective
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: OLINgui
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200167 ! data normalization objective
relationship: OBI:0000417 OBI:0200173 ! background correction objective
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: Optiquant
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000311
name: OrderedList
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200031 ! differential expression analysis objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000425 ! Similarity score
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000312
name: OutlierD
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200167 ! data normalization objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000674 ! quantile regression techniques
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000313
name: Presence-Absence calls with Negative Probesets (PANP)
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000314
name: PAnnBuilder
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000315
name: Pearson correlation estimator
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000316
name: PCpheno
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200031 ! differential expression analysis objective
relationship: OBI:0000417 OBI:0200078 ! descriptive statistical calculation objective
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000576 ! hypergeometric enrichment
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000317
name: PGSEA
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000318
name: 'PLM'
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000319
name: PLPE
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200031 ! differential expression analysis objective
relationship: OBI:0000417 OBI:0200078 ! descriptive statistical calculation objective
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000320
name: Probe level Locally moderated Weighted median-t (PLW) method
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000321
name: PPC algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000322
name: PROcess
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200078 ! descriptive statistical calculation objective
relationship: OBI:0000417 OBI:0200173 ! background correction objective
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000323
name: propagation of uncertainty in microarray analysis
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000324
name: Pathways 2.01 software
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000326
name: Power Law Global Error Model (PLGEM) analysis method
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000327
name: Probe Cell Analysis
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000272  ! MicroArraySuite 5.0

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000328
name: PLIER (Probe Logarithmic Error Intensity Estimate) method
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000329
name: QuantArray scanner software
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000330
name: QuantArray, PackaardBiochip technologies
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000329  ! QuantArray scanner software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000331
name: QuantArray version 2
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000329  ! QuantArray scanner software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000332
name: Radial basis function
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000333
name: RBGL
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 OBI:0200078 ! descriptive statistical calculation objective
relationship: OBI:0000417 http://www.ebi.ac.uk/efo/swo/SWO_0000724 ! data visualization objective
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000334
name: R interface to boost graph library algorithm (RBGL)
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000335
name: RBioinf
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000595 ! Linear modelling
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000336
name: Random effects model
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000337
name: Recursive Feature Elimination (RFE)
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000338
name: RLMM
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000661 ! graph plot
relationship: OBI:0000417 OBI:0200167 ! data normalization objective
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000339
name: Regression model
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000340
name: RMA
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000341
name: RMA+
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000342
name: RMA++
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000343
name: RMAExpress
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000116 ! text data set

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000344
name: RMAExpress 2.0
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000343  ! RMAExpress

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000345
name: RMAExpress quantification
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000343  ! RMAExpress

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000346
name: RMAGEML
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000268 ! MAGE-ML files
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000347
name: RNAither
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000116 ! text data set
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000575 ! HTML report
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000348
name: ROC
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000554 ! gene expression dataset
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000349
name: RWebServices
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000350
name: RankProd
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000554 ! gene expression dataset
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: OBI:0000417 OBI:0200031 ! differential expression analysis objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000681 ! rank product non-parametric method
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000352
name: RbcBook1
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000353
name: Rdbi
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000661 ! graph plot
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000354
name: RdbiPgSQL
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000661 ! graph plot
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000355
name: Rdisop
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000661 ! graph plot
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000356
name: RefPlus
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000554 ! gene expression dataset
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000661 ! graph plot
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000358
name: Resourcerer
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000469 ! annotation data packages
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000116 ! text data set
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000359
name: Rgraphviz
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000661 ! graph plot
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: Ringo
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000116 ! text data set
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000361
name: Rintact
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000448 ! XML
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: OBI:0000417 http://www.ebi.ac.uk/efo/swo/SWO_0000648 ! parse objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: Rmagpie
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000554 ! gene expression dataset
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000116 ! text data set
relationship: OBI:0000417 http://www.ebi.ac.uk/efo/swo/SWO_0000511 ! cross validation objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000337 ! Recursive Feature Elimination (RFE)
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: Rnw
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000364
name: Robust likelihood-based survival modeling
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000365
name: Rosetta Resolver
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000367
name: RpsiXML
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000448 ! XML
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: OBI:0000417 http://www.ebi.ac.uk/efo/swo/SWO_0000648 ! parse objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: Rredland
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000116 ! text data set
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000369
name: Rtreemix
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000116 ! text data set
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: OBI:0000417 OBI:0000704 ! decision tree induction objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: Ruuid
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000116 ! text data set
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000437 ! Theodore Ts’o’s
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000371
name: S-Score algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000372
name: Serial Analysis of Gene Expression (SAGE)
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000373
name: SAGx
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000374
name: SAM
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000375
name: SAS/STAT Software, Version 8
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000377
name: SBMLR
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000380 ! SBML model
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000378
name: SBMLR file
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000379
name: SBML file
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000380
name: SBML model
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000381
name: SDF format
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000382
name: SIM
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000624 ! microarray data
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000560 ! Global test
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000383
name: SLGI
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000469 ! annotation data packages
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000384
name: SLqPCR
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000385
name: SMAP
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000217 ! Hidden Markov Model
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000386
name: SNPRMA algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000387
name: SNPchip
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000217 ! Hidden Markov Model
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000388
name: SPIA
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000554 ! gene expression dataset
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000423 ! Signaling Pathway Impact Analysis (SPIA) algorithm
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000389
name: Semantic Similarity Measures
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000390
name: SSPA
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000011 ! ALL/AML data set
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000391
name: SVDimpute algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000392
name: software developer role
namespace: http
def: "Software developer role is a role borne by an organization or individual in which they are responsible for authoring software." []
is_a: snap:Role  ! role

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000393
name: information processing
namespace: http
def: "Information processing is a process in which input information is analysed or transformed in order to produce information as output." []
is_a: span:ProcessualEntity  ! process

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000396
name: software developer organization
namespace: http
is_a: OBI:0000245  ! organization

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000397
name: software publisher organization
namespace: http
is_a: OBI:0000245  ! organization

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000398
name: 50-50 MANOVA algorithm
namespace: http
def: "Classical multivariate analysis-of-variance tests perform poorly in cases with several highly correlated responses and the tests collapse when the number of responses exceeds the number of observations. This paper presents a new method which handles this problem. The dimensionality of the data is reduced by using principal component decompositions and the final tests are still based on the classical test statistics and their distributions. The methodology is illustrated with an example from the production of sausages with responses from near infrared reflectance spectroscopy. A closely related method for testing relationships in uniresponse regression with collinear explanatory variables is also presented. The new test, which is called the 50-50 F-test, uses the first k components to calculate SSMODEL. The next d components are not involved in SSERROR and they are called buffer components." []
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000399
name: html
namespace: http
def: "html, or HyperText Markup Language in full, is a data format specification is a markup language for web pages and is the publishing language of the World Wide Web." []
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000405
name: ArrayExpress Bioconductor
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000406
name: gene list
namespace: http
is_a: IAO:0000027  ! data

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000408
name: clustered data set
namespace: http
is_a: IAO:0000027  ! data

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000409
name: R data frame
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000415
name: R language
namespace: http
is_a: IAO:0000025  ! programming language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000416
name: ScISI
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000417
name: ScanAlyze
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000418
name: ScanArray
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000419
name: ScanArray v3.1 software
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000418  ! ScanArray

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000420
name: Scanning software
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000421
name: Scanning software G2565AA version A6.3.1
namespace: http
is_a: http://www.ebi.ac.uk/efo/swo/SWO_0000420  ! Scanning software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000422
name: ShortRead
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000116 ! text data set
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000423
name: Signaling Pathway Impact Analysis (SPIA) algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000424
name: Silicon Genetics Genespring
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000425
name: Similarity score
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000426
name: 'Smith-Waterman'
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000428
name: Spot quantification
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000429
name: Spotfinder [TIGR]
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000430
name: Spotfire
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000432
name: TAS Software
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000434
name: TIFF image
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000435
name: TargetSearch
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000116 ! text data set
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000437
name: Theodore Ts’o’s
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000438
name: TypeInfo
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000441
name: variance-stabilizing transformation (VST) algorithm
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000442
name: VanillaICE
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000217 ! Hidden Markov Model
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000444
name: WilcEbam
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000445
name: Wilcoxon
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000446
name: XDE
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000554 ! gene expression dataset
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000447
name: XDotsReader
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000448
name: XML
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000449
name: Xba.CQV and Xba.regions
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000450
name: Array Comparative Genomic Hybridization
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000145 ! 'FDR'
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000217 ! Hidden Markov Model
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000740 http://www.ebi.ac.uk/efo/swo/SWO_0000715 ! 't-test'
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000451
name: Acuity
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000452
name: 'affxparser'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000116 ! text data set
relationship: OBI:0000417 http://www.ebi.ac.uk/efo/swo/SWO_0000648 ! parse objective
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
id: http://www.ebi.ac.uk/efo/swo/SWO_0000453
name: 'affyContam'
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: OBI:0000299 http://www.ebi.ac.uk/efo/swo/SWO_0000409 ! R data frame
relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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[Term]
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namespace: http
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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namespace: http
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[Term]
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[Term]
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namespace: http
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[Term]
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name: 'arrayQuality'
namespace: http
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[Term]
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namespace: http
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[Term]
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name: arrayWoRx 2.0
namespace: http
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[Term]
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name: arrayWoRx
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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name: associative T method
namespace: http
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[Term]
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name: avgNRRs
namespace: http
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[Term]
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name: 'beadarray'
namespace: http
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relationship: OBI:0000293 http://www.ebi.ac.uk/efo/swo/SWO_0000116 ! text data set
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[Term]
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name: 'beadarraySNP'
namespace: http
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[Term]
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namespace: http
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[Term]
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[Term]
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[Term]
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name: bitmap object
namespace: http
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[Term]
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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[Term]
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namespace: http
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[Term]
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namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
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is_a: IAO:0000098  ! data format specification

[Term]
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namespace: http
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[Term]
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namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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name: Concordance
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
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namespace: http
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is_a: IAO:0000005  ! objective specification

[Term]
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namespace: http
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[Term]
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namespace: http
is_a: IAO:0000005  ! objective specification

[Term]
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namespace: http
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[Term]
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name: dChip
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software

[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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is_a: IAO:0000064  ! algorithm

[Term]
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[Term]
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namespace: http
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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namespace: http
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[Term]
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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[Term]
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namespace: http
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[Term]
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namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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namespace: http
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[Term]
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name: jpeg
namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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namespace: http
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[Term]
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name: lapmix
namespace: http
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[Term]
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name: likelihood method
namespace: http
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[Term]
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[Term]
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[Term]
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namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: lma
namespace: http
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[Term]
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name: local-pooled-error
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: log file
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
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namespace: http
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[Term]
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name: logicFS dataset
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
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name: logitT
namespace: http
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[Term]
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namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: lumi
namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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name: made4
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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[Term]
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[Term]
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namespace: http
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[Term]
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name: makecdfenv
namespace: http
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[Term]
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name: marray
namespace: http
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[Term]
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name: 'MAS5'
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: mas5 format
namespace: http
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[Term]
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namespace: http
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[Term]
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name: mdqc
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: M-estimation regression
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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[Term]
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namespace: http
is_a: IAO:0000027  ! data

[Term]
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namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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[Term]
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name: miRNApath
namespace: http
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[Term]
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namespace: http
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: microarray data
namespace: http
is_a: IAO:0000027  ! data

[Term]
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namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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[Term]
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namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: Multiple testing
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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name: multivariate t mixture models
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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namespace: http
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relationship: http://www.ebi.ac.uk/efo/swo/SWO_0000741 http://www.ebi.ac.uk/efo/swo/SWO_0000415 ! R language

[Term]
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name: negative binomial distribution
namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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is_a: IAO:0000027  ! data

[Term]
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[Term]
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[Term]
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is_a: IAO:0000064  ! algorithm

[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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is_a: IAO:0000064  ! algorithm

[Term]
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is_a: IAO:0000064  ! algorithm

[Term]
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[Term]
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[Term]
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[Term]
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namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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name: sproc
namespace: http
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[Term]
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name: sqlite
namespace: http
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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namespace: http
is_a: IAO:0000064  ! algorithm

[Term]
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[Term]
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namespace: http
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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[Term]
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namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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[Term]
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namespace: http
def: "Software is a specification which is a series of encoded instructions that can be directly executed by a processing unit or transformed in to a form that can be. For programming texts that are syntactically correct and which are in a language that can be executed by an interpreter this would correspond to the tokenized version of the text stripped of comments." []
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[Term]
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namespace: http
is_a: IAO:0000030  ! information artifact

[Term]
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name: information processing
namespace: http
is_a: span:ProcessualEntity  ! process

[Term]
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namespace: http
def: "Microsoft Excel 2007 is a spreadsheet editing and viewing tool." []
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[Term]
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[Term]
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[Term]
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name: OmniOutliner
namespace: http
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[Term]
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[Term]
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namespace: http
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[Term]
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[Term]
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namespace: http
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[Term]
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name: Java
namespace: http
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[Term]
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name: COPASI
namespace: http
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[Term]
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namespace: http
def: "Microsoft Excel 2003 is a spreadsheet editing and viewing tool." []
is_a: http://www.ebi.ac.uk/swo/SWO_9000070  ! Microsoft Excel

[Term]
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name: Microsoft Excel 2001
namespace: http
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[Term]
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[Term]
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name: MATLAB 6
namespace: http
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[Term]
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name: MATLAB 7.12
namespace: http
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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namespace: http
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[Term]
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[Term]
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name: Microsoft Word
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[Term]
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namespace: http
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[Term]
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name: OBO-Edit
namespace: http
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[Term]
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name: ontology engineering software
namespace: http
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[Term]
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name: Microsoft developed software
namespace: http
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[Term]
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name: software with command line interface
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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namespace: http
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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namespace: http
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[Term]
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name: software interface
namespace: http
is_a: IAO:0000030  ! information artifact

[Term]
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[Term]
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[Term]
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[Term]
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namespace: http
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[Term]
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[Term]
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[Term]
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namespace: http
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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[Term]
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name: Dropbox
namespace: http
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relationship: http://www.ebi.ac.uk/swo/OWLObjectProperty_00000011293132912570 http://www.ebi.ac.uk/swo/interface/SWO_9000054 ! Application Programming Interface
relationship: http://www.ebi.ac.uk/swo/has_license http://www.ebi.ac.uk/swo/license/SWO_1000002 ! proprietary commercial software license

[Term]
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name: Eclipse
namespace: http
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relationship: http://www.ebi.ac.uk/swo/has_license http://www.ebi.ac.uk/swo/license/SWO_9000084 ! Eclipse Public Licence

[Term]
id: http://www.ebi.ac.uk/swo/SWO_9000092
name: EMBOSS package
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
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relationship: OBI:0000417 http://www.ebi.ac.uk/swo/objective/SWO_4000016 ! molecular sequence analysis
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relationship: http://www.ebi.ac.uk/swo/has_license http://www.ebi.ac.uk/swo/license/SWO_1000004 ! GNU General Public License
relationship: http://www.ebi.ac.uk/swo/has_license http://www.ebi.ac.uk/swo/license/SWO_9000080 ! Lesser GNU Public Licence

[Term]
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name: Endnote
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000001  ! software
relationship: OBI:0000417 http://www.ebi.ac.uk/swo/objective/SWO_4000017 ! Citation management
relationship: http://www.ebi.ac.uk/swo/OWLObjectProperty_00000011293132912570 http://www.ebi.ac.uk/swo/interface/SWO_9000052 ! Graphical User Interface
relationship: http://www.ebi.ac.uk/swo/has_license http://www.ebi.ac.uk/swo/license/SWO_1000002 ! proprietary commercial software license
relationship: http://www.ebi.ac.uk/swo/maturity/SWO_9000067 http://www.ebi.ac.uk/swo/maturity/SWO_9000065 ! live

[Term]
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name: Grimoires
namespace: http
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relationship: http://www.ebi.ac.uk/swo/OWLObjectProperty_00000011293132912570 http://www.ebi.ac.uk/swo/interface/SWO_9000053 ! Command Line Interface
relationship: http://www.ebi.ac.uk/swo/OWLObjectProperty_00000011293132912570 http://www.ebi.ac.uk/swo/interface/SWO_9000054 ! Application Programming Interface
relationship: http://www.ebi.ac.uk/swo/has_license http://www.ebi.ac.uk/swo/license/SWO_9000085 ! Modified BSD Licence
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name: clustering algorithm
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_731692  ! single generalization algorithm

[Term]
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name: pattern discovery algorithm
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_731692  ! single generalization algorithm

[Term]
id: http://www.ebi.ac.uk/swo/algorithm/OntoDM_382176
name: predictive modeling algorithm
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_731692  ! single generalization algorithm

[Term]
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name: clustering specification
namespace: http
is_a: http://kt.ijs.si/panovp/OntoDM#OntoDM_419460  ! single generalization specification

[Term]
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name: spreadsheet
namespace: http
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is_a: IAO:0000098  ! data format specification

[Term]
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name: XLS spreadsheet
namespace: http
def: "A spreadsheet data format designed for Microsoft Excel." []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000001  ! spreadsheet

[Term]
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name: XML spreadsheet
namespace: http
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is_a: http://www.ebi.ac.uk/swo/data/SWO_3000001  ! spreadsheet

[Term]
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name: matlab m file
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000005
name: XML
namespace: http
def: "Extensible Markup Language (XML) is a standard set of rules for encoding documents in a machine-readable form defined by the W3C." []
is_a: IAO:0000098  ! data format specification

[Term]
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name: RDF
namespace: http
def: "The Resource Description Framework (RDF) is a general-purpose language for representing information in the Web." []
is_a: IAO:0000098  ! data format specification

[Term]
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name: RDF-XML
namespace: http
def: "A serialisation of RDF into an XML format." []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000005  ! XML
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000006  ! RDF

[Term]
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name: image format
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000009
name: DWG
namespace: http
def: "DWG (\"drawing\") is a binary file format used for storing two and three dimensional design data and metadata" []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000008  ! image format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000010
name: DXF
namespace: http
def: "DXF (Drawing Interchange Format, or Drawing Exchange Format) is a CAD data file format developed by Autodesk for enabling data interoperability between AutoCAD and other programs." []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000008  ! image format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000011
name: BMP
namespace: http
def: "The BMP File Format is a Raster graphics image file format used to store bitmap digital images, independently of the display device (such as a graphics adapter)." []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000020  ! raster image format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000012
name: CGM
namespace: http
def: "Computer Graphics Metafile (CGM) is a free and open international standard file format for 2D vector graphics, raster graphics, and text, and is defined by ISO/IEC 8632." []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000020  ! raster image format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000013
name: web page specification
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000014
name: document exchange format
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000015
name: pdf
namespace: http
def: "PDF is an open standard for document exchange. " []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000014  ! document exchange format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000016
name: TIFF
namespace: http
def: "TIFF is a flexible, adaptable file format for handling images and data within a single file, by including the header tags (size, definition, image-data arrangement, applied image compression) defining the image's geometry." []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000020  ! raster image format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000017
name: JPEG
namespace: http
def: "JPEG is a lossy file format for storing images" []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000020  ! raster image format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000018
name: PNG
namespace: http
def: "PNG is a bitmapped image format and video codec that employs lossless data compression." []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000020  ! raster image format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000019
name: GIF
namespace: http
def: "The Graphics Interchange Format (GIF) is a bitmap image format. The format supports up to 8 bits per pixel thus allowing a single image to reference a palette of up to 256 distinct colors. The colors are chosen from the 24-bit RGB color space. It also supports animations and allows a separate palette of 256 colors for each frame. The color limitation makes the GIF format unsuitable for reproducing color photographs and other images with continuous color, but it is well-suited for simpler images such as graphics or logos with solid areas of color. [wikipedia]" []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000020  ! raster image format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000020
name: raster image format
namespace: http
def: "A raster image is a format for representing a rectangular grid of dots (pixels) which contains information on the specific colour of each pixel." []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000008  ! image format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000021
name: vector image format
namespace: http
def: "A vector image is a collection of connected lines and curves that produce objects. This geometric description enables the image to be displayed without loss at any size rendering." []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000008  ! image format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000022
name: SVG
namespace: http
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000021  ! vector image format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000023
name: AI
namespace: http
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000021  ! vector image format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000024
name: PostScript
namespace: http
def: "PostScript is a format used for describing documents." []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000014  ! document exchange format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000025
name: tex
namespace: http
def: "tex is a format for documents written in the document markup language and document preparation system LaTeX." []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000014  ! document exchange format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000026
name: outline document format
namespace: http
def: "A format specification for data used or produced by outliner software" []
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000027
name: OmniOutline format
namespace: http
def: "A proprietary format for documents created and edited using OmniOutliner outliner software," []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000026  ! outline document format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000028
name: OPML
namespace: http
def: "OPML (Outline Processor Markup Language) is an XML format for outlines" []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000026  ! outline document format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000029
name: JPEG 2000
namespace: http
def: "JPEG 2000 is a compression standard enabling both lossless and lossy storage. The compression methods used are different from the ones in standard JFIF/JPEG; they improve quality and compression ratios, but also require more computational power to process. [wikipedia]" []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000020  ! raster image format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000030
name: word processing document format
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000031
name: WordStar format
namespace: http
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000030  ! word processing document format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000032
name: Microsoft Word doc
namespace: http
def: "A file format for word processing documents for Microsoft Word. " []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000030  ! word processing document format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000033
name: programming language format
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000034
name: .java file
namespace: http
def: "A source code file format which is specified to be used with the Java programming language." []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000033  ! programming language format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000035
name: .class file
namespace: http
def: "A format in which a .java file has been compiled into bytecode using a Java compiler and which is specified to be executed using the Java virtual machine." []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000033  ! programming language format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000036
name: CopasiML
namespace: http
def: "An XML-based file format for use with the COPASI software." []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000005  ! XML

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000037
name: SBML
namespace: http
def: "Systems Biology Markup Language (SBML) is a machine-readable format for representing models. It's oriented towards describing systems where biological entities are involved in, and modified by, processes that occur over time." []
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000038
name: OWL-XML
namespace: http
def: "The Web Ontology Language (OWL) in XML serialization" []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000005  ! XML

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000039
name: OWL2-XML
namespace: http
def: "Web Ontology Language version 2 in XML Serialization" []
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000005  ! XML

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000040
name: OBO Flat File Format
namespace: http
def: "OBO format is the text file format used by OBO-Edit, the open source, platform-independent application for viewing and editing ontologies. " []
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000041
name: text file format
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000042
name: ASCII format
namespace: http
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000043  ! plain text file format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000043
name: plain text file format
namespace: http
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000041  ! text file format

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000045
name: MAGE tab format
namespace: http
is_a: IAO:0000098  ! data format specification

[Term]
id: http://www.ebi.ac.uk/swo/data/SWO_3000046
name: tab delimited file format
namespace: http
is_a: http://www.ebi.ac.uk/swo/data/SWO_3000041  ! text file format

[Term]
id: http://www.ebi.ac.uk/swo/interface/SWO_9000051
name: Web Service
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_9000050  ! software interface

[Term]
id: http://www.ebi.ac.uk/swo/interface/SWO_9000052
name: Graphical User Interface
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_9000050  ! software interface

[Term]
id: http://www.ebi.ac.uk/swo/interface/SWO_9000053
name: Command Line Interface
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_9000050  ! software interface

[Term]
id: http://www.ebi.ac.uk/swo/interface/SWO_9000054
name: Application Programming Interface
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_9000050  ! software interface

[Term]
id: http://www.ebi.ac.uk/swo/license/SWO_1000001
name: creative commons
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000002  ! software license

[Term]
id: http://www.ebi.ac.uk/swo/license/SWO_1000002
name: proprietary commercial software license
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000002  ! software license

[Term]
id: http://www.ebi.ac.uk/swo/license/SWO_1000003
name: Mozilla Public License Version 1.1
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000002  ! software license

[Term]
id: http://www.ebi.ac.uk/swo/license/SWO_10000035
name: distribution clause
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_9000005  ! clause

[Term]
id: http://www.ebi.ac.uk/swo/license/SWO_10000036
name: distribution restricted
namespace: http
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disjoint_from: http://www.ebi.ac.uk/swo/license/SWO_10000037  ! distribution unrestricted

[Term]
id: http://www.ebi.ac.uk/swo/license/SWO_10000037
name: distribution unrestricted
namespace: http
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[Term]
id: http://www.ebi.ac.uk/swo/license/SWO_10000038
name: derivative software allowed
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_9000017  ! restrictions on derivative software
disjoint_from: http://www.ebi.ac.uk/swo/SWO_9000018  ! no derivative software allowed

[Term]
id: http://www.ebi.ac.uk/swo/license/SWO_1000004
name: GNU General Public License
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000002  ! software license
relationship: http://www.ebi.ac.uk/swo/SWO_9001002 http://www.ebi.ac.uk/swo/SWO_9000019 ! derivative code same license
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relationship: http://www.ebi.ac.uk/swo/SWO_9001002 http://www.ebi.ac.uk/swo/license/SWO_10000037 ! distribution unrestricted

[Term]
id: http://www.ebi.ac.uk/swo/license/SWO_1000005
name: Apache license v2
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000002  ! software license
relationship: http://www.ebi.ac.uk/swo/SWO_9001002 http://www.ebi.ac.uk/swo/SWO_9000016 ! no restrictions on derivatives
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[Term]
id: http://www.ebi.ac.uk/swo/license/SWO_1000006
name: Academic Licence version 3
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000002  ! software license
relationship: http://www.ebi.ac.uk/swo/SWO_9001002 http://www.ebi.ac.uk/swo/SWO_9000020 ! source code available
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relationship: http://www.ebi.ac.uk/swo/SWO_9001002 http://www.ebi.ac.uk/swo/license/SWO_10000038 ! derivative software allowed

[Term]
id: http://www.ebi.ac.uk/swo/license/SWO_1000007
name: FreeBSD Licence
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000002  ! software license
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[Term]
id: http://www.ebi.ac.uk/swo/license/SWO_1000008
name: open source software license
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000002  ! software license

[Term]
id: http://www.ebi.ac.uk/swo/license/SWO_1000009
name: licence without restrictions on derivatives
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000002  ! software license

[Term]
id: http://www.ebi.ac.uk/swo/license/SWO_9000059
name: distribution with notices
namespace: http
is_a: http://www.ebi.ac.uk/swo/license/SWO_10000035  ! distribution clause

[Term]
id: http://www.ebi.ac.uk/swo/license/SWO_9000074
name: MIT Licence
namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000002  ! software license
relationship: http://www.ebi.ac.uk/swo/SWO_9001002 http://www.ebi.ac.uk/swo/SWO_9000020 ! source code available
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relationship: http://www.ebi.ac.uk/swo/SWO_9001002 http://www.ebi.ac.uk/swo/SWO_9000027 ! number of users unrestricted
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namespace: http
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[Term]
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namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000002  ! software license
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relationship: http://www.ebi.ac.uk/swo/SWO_9001002 http://www.ebi.ac.uk/swo/SWO_9000020 ! source code available

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name: Latex Project Public Licence
namespace: http
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namespace: http
is_a: http://www.ebi.ac.uk/swo/SWO_0000002  ! software license
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name: alpha
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name: first release
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def: "The first release of a piece of software. A first release does not imply any particular levels of maturity other than is this is the first instance of this software to be considered released." []
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name: latest release
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def: "The latest release of a piece of software. This does not imply any levels of maturity other than indicating this is the most recent release." []
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[Term]
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name: maintained
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name: spreadsheet editing
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name: document outlining
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name: image compression
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[Term]
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name: ontology engineering
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name: word processing
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name: software development
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[Term]
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name: simulation and analysis of biochemical networks
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name: laboratory information management
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def: "Manage Laboratory information such is commonly performed by LIMS software." []
is_a: IAO:0000005  ! objective specification

[Term]
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def: "the objective of performing the actions of an operation system such as managing the software running a computer and the interactions with the system resources and hardware." []
is_a: IAO:0000005  ! objective specification

[Term]
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name: text editing
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def: "Text editing is the objective of editing plain text files." []
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[Term]
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name: file rendering
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name: annotation editing
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[Term]
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[Term]
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[Term]
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[Term]
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[Instance]
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[Instance]
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[Instance]
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[Instance]
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[Instance]
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[Instance]
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[Instance]
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id: http://www.ebi.ac.uk/swo/organization/SWO_9000015
name: Thompson Reuters
instance_of: OBI:0000245  ! organization

[Instance]
id: http://www.ebi.ac.uk/swo/organization/SWO_9000016
name: OMII-UK
instance_of: OBI:0000245  ! organization

[Instance]
id: http://www.ebi.ac.uk/swo/organization/SWO_9000017
name: Apple
instance_of: OBI:0000245  ! organization

[Instance]
id: http://www.ebi.ac.uk/swo/organization/SWO_9000018
name: The University of Manchester
instance_of: OBI:0000245  ! organization

[Instance]
id: http://www.ebi.ac.uk/swo/organization/SWO_9000019
name: European Bioinformatics Institute
instance_of: OBI:0000245  ! organization

[Instance]
id: http://www.ebi.ac.uk/swo/organization/SWO_9000020
name: EPCC
instance_of: OBI:0000245  ! organization

[Instance]
id: http://www.ebi.ac.uk/swo/organization/SWO_9000021
name: The National Archives, Tessella
instance_of: OBI:0000245  ! organization

[Instance]
id: http://www.ebi.ac.uk/swo/organization/SWO_9000022
name: Spotify Ltd.
instance_of: OBI:0000245  ! organization

[Instance]
id: http://www.ebi.ac.uk/swo/organization/SWO_9000023
name: Mozilla Foundation
instance_of: OBI:0000245  ! organization

[Instance]
id: http://www.ebi.ac.uk/swo/organization/SWO_9000024
name: Altova
instance_of: OBI:0000245  ! organization

[Instance]
id: http://www.ebi.ac.uk/swo/organization/SWO_9000025
name: The GIMP Development Team
instance_of: OBI:0000245  ! organization

[Instance]
id: http://www.ebi.ac.uk/swo/organization/SWO_9000026
name: Canonical Ltd
instance_of: OBI:0000245  ! organization

[Instance]
id: http://www.ebi.ac.uk/swo/organization/SWO_9000027
name: Apache Software Foundation
instance_of: OBI:0000245  ! organization

[Instance]
id: http://www.ebi.ac.uk/swo/organization/SWO_9000028
name: European Patent Office
instance_of: OBI:0000245  ! organization

[Instance]
id: http://www.ebi.ac.uk/swo/organization/SWO_9000029
name: National Cancer Institute
instance_of: OBI:0000245  ! organization

[Instance]
id: http://www.ebi.ac.uk/swo/version/6.0
name: 6.0
instance_of: IAO:0000129  ! version name or number

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000001
name: beta
instance_of: IAO:0000129  ! version name or number

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000002
name: alpha
instance_of: IAO:0000129  ! version name or number

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000003
name: Microsoft 98 version
instance_of: IAO:0000129  ! version name or number
relationship: OBO_REL:preceded_by http://www.ebi.ac.uk/swo/version/SWO_2000006 ! Microsoft 95 version
relationship: OBO_REL:precedes http://www.ebi.ac.uk/swo/version/SWO_2000004 ! Microsoft 2001 version

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000004
name: Microsoft 2001 version
instance_of: IAO:0000129  ! version name or number
relationship: OBO_REL:preceded_by http://www.ebi.ac.uk/swo/version/SWO_2000003 ! Microsoft 98 version
relationship: OBO_REL:precedes http://www.ebi.ac.uk/swo/version/SWO_2000005 ! Microsoft 2003 version

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000005
name: Microsoft 2003 version
instance_of: IAO:0000129  ! version name or number
relationship: OBO_REL:preceded_by http://www.ebi.ac.uk/swo/version/SWO_2000004 ! Microsoft 2001 version
relationship: OBO_REL:precedes http://www.ebi.ac.uk/swo/version/SWO_2000007 ! Microsoft 2007 version

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000006
name: Microsoft 95 version
instance_of: IAO:0000129  ! version name or number
relationship: OBO_REL:precedes http://www.ebi.ac.uk/swo/version/SWO_2000003 ! Microsoft 98 version

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000007
name: Microsoft 2007 version
instance_of: IAO:0000129  ! version name or number
relationship: OBO_REL:preceded_by http://www.ebi.ac.uk/swo/version/SWO_2000005 ! Microsoft 2003 version
relationship: OBO_REL:precedes http://www.ebi.ac.uk/swo/version/SWO_2000008 ! Microsoft 2010 version

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000008
name: Microsoft 2010 version
instance_of: IAO:0000129  ! version name or number
relationship: OBO_REL:preceded_by http://www.ebi.ac.uk/swo/version/SWO_2000007 ! Microsoft 2007 version

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000009
name: version 3
instance_of: IAO:0000129  ! version name or number

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000010
name: version 4
instance_of: IAO:0000129  ! version name or number

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000011
name: Matlab R14
instance_of: IAO:0000129  ! version name or number
relationship: OBO_REL:preceded_by http://www.ebi.ac.uk/swo/version/SWO_2000012 ! Matlab R12
relationship: OBO_REL:precedes http://www.ebi.ac.uk/swo/version/SWO_2000013 ! R2011a

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000012
name: Matlab R12
instance_of: IAO:0000129  ! version name or number
relationship: OBO_REL:precedes http://www.ebi.ac.uk/swo/version/SWO_2000011 ! Matlab R14

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000013
name: R2011a
instance_of: IAO:0000129  ! version name or number
relationship: OBO_REL:preceded_by http://www.ebi.ac.uk/swo/version/SWO_2000011 ! Matlab R14

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000014
name: Microsoft XP
instance_of: IAO:0000129  ! version name or number

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000015
name: 14
instance_of: IAO:0000129  ! version name or number

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000016
name: 5.1
instance_of: IAO:0000129  ! version name or number

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000017
name: 3.5.1
instance_of: IAO:0000129  ! version name or number

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000018
name: 10.1
instance_of: IAO:0000129  ! version name or number

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000019
name: 1
instance_of: IAO:0000129  ! version name or number

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000020
name: 3.0.1
instance_of: IAO:0000129  ! version name or number

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000021
name: 1.6.9
instance_of: IAO:0000129  ! version name or number

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000022
name: 6.02
instance_of: IAO:0000129  ! version name or number

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000023
name: Helios Service Release 2
instance_of: IAO:0000129  ! version name or number

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000024
name: 6.3.0
instance_of: IAO:0000129  ! version name or number

[Instance]
id: http://www.ebi.ac.uk/swo/version/SWO_2000025
name: 2.0.0
instance_of: IAO:0000129  ! version name or number