# server.entrez 2011-10-05 14:07:00 # database names listed by the Einfo utility # http://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi? # database dbxyz details listed by # http://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi?db=dbxyz DB pubmed [ type: "text" format: "text" comment: "PubMed bibliographic record" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "TITL Title ! Words in title of publication" field: "WORD Text_Word ! Free text associated with publication" field: "MESH MeSH_Terms ! Medical Subject Headings assigned to publication" field: "MAJR MeSH_Major_Topic ! MeSH terms of major importance to publication" field: "AUTH Author ! Author(s) of publication" field: "JOUR Journal ! Journal abbreviation of publication" field: "AFFL Affiliation ! Author's institutional affiliation and address" field: "ECNO EC_RN_Number ! EC number for enzyme or CAS registry number" field: "SUBS Supplementary_Concept ! CAS chemical name or MEDLINE Substance Name" field: "PDAT Publication_Date ! Date of publication" field: "EDAT Entrez_Date ! Date publication first accessible through Entrez" field: "VOL Volume ! Volume number of publication" field: "PAGE Pagination ! Page number(s) of publication" field: "PTYP Publication_Type ! Type of publication (e.g., review)" field: "LANG Language ! Language of publication" field: "ISS Issue ! Issue number of publication" field: "SUBH MeSH_Subheading ! Additional specificity for MeSH term" field: "SI Secondary_Source_ID ! Cross-reference from publication to other databases" field: "MHDA MeSH_Date ! Date publication was indexed with MeSH terms" field: "TIAB Title_Abstract ! Free text associated with Abstract/Title" field: "OTRM Other_Term ! Other terms associated with publication" field: "INVR Investigator ! Investigator" field: "COLN Corporate_Author ! Corporate Author of publication" field: "CNTY Place_of_Publication ! Country of publication" field: "PAPX Pharmacological_Action ! MeSH pharmacological action pre-explosions" field: "GRNT Grant_Number ! NIH Grant Numbers" field: "MDAT Modification_Date ! Date of last modification" field: "CDAT Completion_Date ! Date of completion" field: "PID Publisher_ID ! Publisher ID" field: "FAUT First_Author ! First Author of publication" field: "FULL Full_Author_Name ! Full Author Name(s) of publication" field: "FINV Full_Investigator_Name ! Full name of investigator" field: "TT Transliterated_Title ! Words in transliterated title of publication" field: "LAUT Last_Author ! Last Author of publication" field: "PPDT Print_Publication_Date ! Date of print publication" field: "EPDT Electronic_Publication_Date ! Date of Electronic publication" field: "LID Location_ID ! ELocation ID" field: "CRDT Create_Date ! Date publication first accessible through Entrez" field: "BOOK Book ! ID of the book that contains the document" field: "ED Editor ! Section's Editor" field: "ISBN ISBN ! ISBN" field: "PUBN Publisher ! Publisher's name" field: "AUCL Author_Cluster_ID ! Author Cluster ID" field: "EID Extended_PMID ! Extended PMID" ] DB protein [ type: "protein" format: "genpept,fasta" comment: "Protein sequence record" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to each sequence" field: "FILT Filter ! Limits the records" field: "WORD Text_Word ! Free text associated with record" field: "TITL Title ! Words in definition line" field: "KYWD Keyword ! Nonstandardized terms provided by submitter" field: "AUTH Author ! Author(s) of publication" field: "JOUR Journal ! Journal abbreviation of publication" field: "VOL Volume ! Volume number of publication" field: "ISS Issue ! Issue number of publication" field: "PAGE Page_Number ! Page number(s) of publication" field: "ORGN Organism ! Scientific and common names of organism, and all higher levels of taxonomy" field: "ACCN Accession ! Accession number of sequence" field: "PACC Primary_Accession ! Does not include retired secondary accessions" field: "GENE Gene_Name ! Name of gene associated with sequence" field: "PROT Protein_Name ! Name of protein associated with sequence" field: "ECNO EC_RN_Number ! EC number for enzyme or CAS registry number" field: "PDAT Publication_Date ! Date sequence added to GenBank" field: "MDAT Modification_Date ! Date of last update" field: "SUBS Substance_Name ! CAS chemical name or MEDLINE Substance Name" field: "PROP Properties ! Classification by source qualifiers and molecule type" field: "SQID SeqID_String ! String identifier for sequence" field: "GPRJ BioProject ! BioProject" field: "SLEN Sequence_Length ! Length of sequence" field: "MLWT Molecular_Weight ! Molecular Weight" field: "FKEY Feature_key ! Feature annotated on sequence" field: "PORG Primary_Organism ! Scientific and common names of primary organism, and all higher levels of taxonomy" ] DB nuccore [ type: "nucleotide" format: "genbank,fasta" comment: "Core Nucleotide db" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to each sequence" field: "FILT Filter ! Limits the records" field: "WORD Text_Word ! Free text associated with record" field: "TITL Title ! Words in definition line" field: "KYWD Keyword ! Nonstandardized terms provided by submitter" field: "AUTH Author ! Author(s) of publication" field: "JOUR Journal ! Journal abbreviation of publication" field: "VOL Volume ! Volume number of publication" field: "ISS Issue ! Issue number of publication" field: "PAGE Page_Number ! Page number(s) of publication" field: "ORGN Organism ! Scientific and common names of organism, and all higher levels of taxonomy" field: "ACCN Accession ! Accession number of sequence" field: "PACC Primary_Accession ! Does not include retired secondary accessions" field: "GENE Gene_Name ! Name of gene associated with sequence" field: "PROT Protein_Name ! Name of protein associated with sequence" field: "ECNO EC_RN_Number ! EC number for enzyme or CAS registry number" field: "PDAT Publication_Date ! Date sequence added to GenBank" field: "MDAT Modification_Date ! Date of last update" field: "SUBS Substance_Name ! CAS chemical name or MEDLINE Substance Name" field: "PROP Properties ! Classification by source qualifiers and molecule type" field: "SQID SeqID_String ! String identifier for sequence" field: "GPRJ BioProject ! BioProject" field: "SLEN Sequence_Length ! Length of sequence" field: "FKEY Feature_key ! Feature annotated on sequence" field: "PORG Primary_Organism ! Scientific and common names of primary organism, and all higher levels of taxonomy" field: "COMP Component_Accession ! Component accessions for an assembly" ] DB nucleotide [ type: "nucleotide" format: "genbank,fasta" comment: "Nucleotide Umbrella db" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to each sequence" field: "FILT Filter ! Limits the records" field: "WORD Text_Word ! Free text associated with record" field: "TITL Title ! Words in definition line" field: "KYWD Keyword ! Nonstandardized terms provided by submitter" field: "AUTH Author ! Author(s) of publication" field: "JOUR Journal ! Journal abbreviation of publication" field: "VOL Volume ! Volume number of publication" field: "ISS Issue ! Issue number of publication" field: "PAGE Page_Number ! Page number(s) of publication" field: "ORGN Organism ! Scientific and common names of organism, and all higher levels of taxonomy" field: "ACCN Accession ! Accession number of sequence" field: "PACC Primary_Accession ! Does not include retired secondary accessions" field: "GENE Gene_Name ! Name of gene associated with sequence" field: "PROT Protein_Name ! Name of protein associated with sequence" field: "ECNO EC_RN_Number ! EC number for enzyme or CAS registry number" field: "PDAT Publication_Date ! Date sequence added to GenBank" field: "MDAT Modification_Date ! Date of last update" field: "SUBS Substance_Name ! CAS chemical name or MEDLINE Substance Name" field: "PROP Properties ! Classification by source qualifiers and molecule type" field: "SQID SeqID_String ! String identifier for sequence" field: "GPRJ BioProject ! BioProject" field: "SLEN Sequence_Length ! Length of sequence" field: "FKEY Feature_key ! Feature annotated on sequence" field: "PORG Primary_Organism ! Scientific and common names of primary organism, and all higher levels of taxonomy" field: "COMP Component_Accession ! Component accessions for an assembly" ] DB nucgss [ type: "nucleotide" format: "genbank,fasta" comment: "GSS db" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to each sequence" field: "FILT Filter ! Limits the records" field: "WORD Text_Word ! Free text associated with record" field: "TITL Title ! Words in definition line" field: "KYWD Keyword ! Nonstandardized terms provided by submitter" field: "AUTH Author ! Author(s) of publication" field: "JOUR Journal ! Journal abbreviation of publication" field: "VOL Volume ! Volume number of publication" field: "ISS Issue ! Issue number of publication" field: "PAGE Page_Number ! Page number(s) of publication" field: "ORGN Organism ! Scientific and common names of organism, and all higher levels of taxonomy" field: "ACCN Accession ! Accession number of sequence" field: "PACC Primary_Accession ! Does not include retired secondary accessions" field: "GENE Gene_Name ! Name of gene associated with sequence" field: "PROT Protein_Name ! Name of protein associated with sequence" field: "ECNO EC_RN_Number ! EC number for enzyme or CAS registry number" field: "PDAT Publication_Date ! Date sequence added to GenBank" field: "MDAT Modification_Date ! Date of last update" field: "SUBS Substance_Name ! CAS chemical name or MEDLINE Substance Name" field: "PROP Properties ! Classification by source qualifiers and molecule type" field: "SQID SeqID_String ! String identifier for sequence" field: "GPRJ BioProject ! BioProject" field: "SLEN Sequence_Length ! Length of sequence" field: "FKEY Feature_key ! Feature annotated on sequence" field: "ID GSS_id ! GSS id in gss table" field: "NAME GSS_Name ! GSS uid in gss table" field: "CLON Clone_ID ! clone id" field: "LIB Library_Name ! Library Name" field: "SUBM Submitter_Name ! Submitter Name" field: "CIT Citation_Title ! Citation Title Publication" field: "LC Library_Class ! Library Class" ] DB nucest [ type: "nucleotide" format: "genbank,fasta" comment: "EST db" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to each sequence" field: "FILT Filter ! Limits the records" field: "WORD Text_Word ! Free text associated with record" field: "TITL Title ! Words in definition line" field: "KYWD Keyword ! Nonstandardized terms provided by submitter" field: "AUTH Author ! Author(s) of publication" field: "JOUR Journal ! Journal abbreviation of publication" field: "VOL Volume ! Volume number of publication" field: "ISS Issue ! Issue number of publication" field: "PAGE Page_Number ! Page number(s) of publication" field: "ORGN Organism ! Scientific and common names of organism, and all higher levels of taxonomy" field: "ACCN Accession ! Accession number of sequence" field: "PACC Primary_Accession ! Does not include retired secondary accessions" field: "GENE Gene_Name ! Name of gene associated with sequence" field: "PROT Protein_Name ! Name of protein associated with sequence" field: "ECNO EC_RN_Number ! EC number for enzyme or CAS registry number" field: "PDAT Publication_Date ! Date sequence added to GenBank" field: "MDAT Modification_Date ! Date of last update" field: "SUBS Substance_Name ! CAS chemical name or MEDLINE Substance Name" field: "PROP Properties ! Classification by source qualifiers and molecule type" field: "SQID SeqID_String ! String identifier for sequence" field: "GPRJ BioProject ! BioProject" field: "SLEN Sequence_Length ! Length of sequence" field: "FKEY Feature_key ! Feature annotated on sequence" field: "ID EST_id ! EST id in est table" field: "NAME EST_Name ! EST uid in est table" field: "CLON Clone_ID ! clone id" field: "LIB Library_Name ! Library Name" field: "SUBM Submitter_Name ! Submitter Name" field: "CIT Citation_Title ! Citation Title Publication" ] DB structure [ type: "" format: "" comment: "Three-dimensional molecular model" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! mmdbId" field: "FILT Filter ! Limits the records" field: "ACCN PdbAcc ! PdbAcc" field: "ECNO EC_RN_Number ! EC" field: "RESO Resolution ! Resolution" field: "EXPM ExpMethod ! ExpMethod" field: "TITL Title ! Title" field: "ABS Abstract ! Primary Citation Abstract" field: "AUTH Author ! Author" field: "PCLA PdbClass ! PdbClass" field: "PSRC PdbSource ! PdbSource" field: "PDSC PdbDescr ! PdbDescr" field: "PCOM PdbComment ! PdbComment" field: "PDD PDB_Deposit_Date ! PDB Deposit Date" field: "DDAT MMDBEntryDate ! MMDB Deposit Date" field: "MDAT MMDBModifyDate ! MMDB Modify Date" field: "LCOD LigCode ! LigCode" field: "LNAM LigName ! LigName" field: "LDES LigDescr ! LigDescr" field: "ORGN Organism ! Organism" field: "TXID TaxonomyID ! TaxonomyID" field: "MPRC ModProteinResCount ! ModProteinResCount" field: "MDRC ModDNAResCount ! ModDNAResCount" field: "MRRC ModRNAResCount ! ModRNAResCount" field: "PCC ProteinChainCount ! ProteinChainCount" field: "PMC ProteinMoleculeCount ! ProteinMoleculeCount" field: "DMC DNAMoleculeCount ! DNAMoleculeCount" field: "DCC DNAChainCount ! DNAChainCount" field: "RMC RNAMoleculeCount ! RNAMoleculeCount" field: "RCC RNAChainCount ! RNAChainCount" field: "BPC BiopolymerCount ! BiopolymerCount" field: "LCOU LigCount ! LigCount" field: "JOUR Journal ! Source journal of structure" field: "CHN PdbChainCode ! PdbChainCode" field: "CDID CDSBID ! identifier for a conserved domain cluster" field: "CDSN Conserved_Domain_Name ! Name of the domain of a conserved domain cluster" field: "CDDT Conserved_Domain_Title ! Title of the domain of a conserved domain cluster" field: "CDDF Conserved_Domain_Description ! Defline of the domain of a conserved domain cluster" field: "SFID CDSUPID ! identifier for a superfamily domain cluster" field: "SPFN Conserved_Domain_Superfamily_Name ! Name of a superfamily of conserved domain clusters" field: "SPTL Conserved_Domain_Superfamily_Title ! Title of a superfamily of conserved domain clusters" field: "SPDF Conserved_Domain_Database_Description ! Definition line of a superfamily of conserved domain clusters" ] DB genome [ type: "nucleotide" format: "" comment: "Genomic sequences, contigs, and maps" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to each sequence" field: "FILT Filter ! Limits the records" field: "WORD Text_Word ! Free text associated with record" field: "TITL Title ! Words in definition line" field: "KYWD Keyword ! Nonstandardized terms provided by submitter" field: "AUTH Author ! Author(s) of publication" field: "JOUR Journal ! Journal abbreviation of publication" field: "VOL Volume ! Volume number of publication" field: "ISS Issue ! Issue number of publication" field: "PAGE Page_Number ! Page number(s) of publication" field: "ORGN Organism ! Scientific and common names of organism, and all higher levels of taxonomy" field: "ACCN Accession ! Accession number of sequence" field: "PACC Primary_Accession ! Does not include retired secondary accessions" field: "GENE Gene_Name ! Name of gene associated with sequence" field: "PROT Protein_Name ! Name of protein associated with sequence" field: "ECNO EC_RN_Number ! EC number for enzyme or CAS registry number" field: "PDAT Publication_Date ! Date sequence added to GenBank" field: "MDAT Modification_Date ! Date of last update" field: "SUBS Substance_Name ! CAS chemical name or MEDLINE Substance Name" field: "PROP Properties ! Classification by source qualifiers and molecule type" field: "SQID SeqID_String ! String identifier for sequence" field: "GPRJ BioProject ! BioProject" field: "SLEN Sequence_Length ! Length of sequence" field: "FKEY Feature_key ! Feature annotated on sequence" field: "RTYP Replicon_type ! Replicon type" field: "RNAM Replicon_name ! Replicon name" field: "ORGL Organelle ! Organelle" field: "PORG Primary_Organism ! Scientific and common names of primary organism, and all higher levels of taxonomy" ] DB genomeprj [ type: "" format: "" comment: "Genome Project Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "ORGN Organism ! Organism" field: "CEN Sequencing_Center ! Sequencing Center(s)" field: "SEQS Sequencing_status ! Sequencing status" field: "GSIZ Genome_Size ! Genome Size" field: "ACCN Accession ! Space delimited GenBank or RefSeq Accessions" field: "CHGI Chromosome_GI ! Uid of a chromosome in Genome DB" field: "WORD Description ! Organism/Project Description" field: "PROP Properties ! Project/Organism Properties" field: "GRAM Gram-type ! Gram-type" field: "SHAP Organism_Shape ! Organism shape" field: "SPOR Endospores ! Endospores" field: "MOTI Organism_Motility ! Organism Motility" field: "OXYR Oxygen_Requirements ! Oxygen Requirements" field: "OPTT Optimal_Growth_Temperature ! Optimal Growth Temperature" field: "TMPR Growth_Temperature_Range ! Growth Temperature Range" field: "GCCO GC_Content ! GC Content" field: "HOST Pathogenic_in ! Pathogenic in" field: "DISE Disease ! Disease" field: "HABI Habitat ! Habitat" field: "CDT Create_Date ! Create Date" field: "RDT Release_Date ! Release Date" field: "LTP Locus_Tag_Prefix ! Locus Tag Prefix" ] DB bioproject [ type: "" format: "" comment: "BioProject Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "ORGN Organism ! Organism" field: "PRJA Project_Accession ! Project Accession" field: "TYPE Project_Type ! Project Type" field: "STPE Project_Subtype ! Project Subtype" field: "DATE Registration_Date ! Registration Date" field: "TITL Title ! Title" field: "CEN Submitter_Organization ! Submitter Organization(s)" field: "ACCN Replicon_accession ! Space delimited GenBank or RefSeq Replicon Accessions" field: "RTYP Replicon_type ! Replicon Type" field: "RNME Replicon_name ! Replicon Name" field: "LTP Locus_Tag_Prefix ! Locus Tag Prefix" field: "WORD Description ! Organism/Project Description" field: "KWRD Keyword ! Keywords" field: "PROP Properties ! Project/Organism Properties" field: "DTPE Project_Data_Type ! Project Data Type" field: "GRNT Grant_ID ! Grant ID" field: "FUND Funding_Agency ! Funding Agency" field: "PMID PMID ! Pubmed ID" field: "DOID DOI ! DOI ID" field: "PID ProjectID ! Project ID" field: "RELV Relevance ! Relevance" field: "ANME Assembly_name ! Assembly Name" field: "BPRJ BioProject_ID ! BioProject ID or accession" field: "TPRJ Top_Bioproject ! Top Bioproject ID" field: "WGSA WGS_Accession ! WGS Accessions" ] DB biosample [ type: "" format: "" comment: "BioSample Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "ACCN Accession ! Accession number of sequence" field: "TITL Title ! Words in definition line" field: "PROP Properties ! Classification by source qualifiers and molecule type" field: "WORD Text_Word ! Free text associated with record" field: "ORGN Organism ! Scientific and common names of organism, and all higher levels of taxonomy" field: "AUTH Author ! Author(s) of publication" field: "PDAT Publication_Date ! Date sequence added to GenBank" field: "MDAT Modification_Date ! Date of last update" field: "ATNM Attribute_Name ! Attribute Name" field: "ATTR Attribute ! Attribute" ] DB biosystems [ type: "" format: "" comment: "BioSystems Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "SRC Source_Name ! Name of the organization that is the source of the record" field: "SRID Source_ID ! A numerical id that is assigned to a particular source of biosystem records" field: "TYPE BioSystem_Type ! Type of the biosystem" field: "PDAT Create_Date ! The date the biosystem record first appeared in the NCBI biosystems database" field: "MDAT Modify_Date ! The date the biosystem record last changed in the NCBI biosystems database" field: "SACC Source_Accession ! The accession used by the source of the biosystem" field: "TITL Title ! The name of the biosystem" field: "DESC Description ! The text description of a biosystem" field: "COM Comments ! Comments on the biosystem" field: "ORGN Organism ! Organism that contain the biosystem" field: "PN Protein_Name ! Names of proteins in a biosystem (definition line)" field: "CN Chemical_Name ! Names of small molecules in a biosystem (taken from PubChem)" field: "SEID SID_External_ID ! Id given to a small molecule by the source of a biosystem" field: "GN Gene_Name ! Gene name" field: "GEID Gene_External_ID ! Id given to a gene by the source of a biosystem" field: "PID Protein_ID ! Protein accessions and gis in a biosystem" field: "CID CID ! PubChem compound identifiers (cid) found in a biosystem" field: "GID Gene_ID ! NCBI gene ids found in a biosystem" field: "SID SID ! PubChem substance ids (sid) found in a biosystem" field: "ACCN Accession ! The biosystem accession (bsid plus version)" field: "SCT SID_Count ! Total Count of PubChem substance ids (sid) found in a biosystem" field: "CCT CID_Count ! Total Count of PubChem compound ids (cid) found in a biosystem" field: "GCT Gene_Count ! Total Count of NCBI Gene records (geneid) found in a biosystem" field: "PCT Protein_Count ! Total Count of NCBI Protein records (gi) found in a biosystem" ] DB blastdbinfo [ type: "" format: "" comment: "BlastdbInfo Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "DB Database_Name ! Official name of the database" field: "TITL Database_Title ! Words in the title of database (e.g., "NCBI Transcript Reference Sequences")" field: "DATE Last_Update ! Date of last database update" field: "ORGN Database_Organism_Taxid ! Organism Taxid" field: "ASM Genome_Collection_Assembly_Name ! Genome Collection Assembly Name" field: "SEQT Blast_Sequence_Type ! One of genomic, cdna, other-dna, or protein, of which genomic and cdna could be further specified" field: "SEQS Blast_Sequence_Strategy ! Appropriate sequence strategy for the sequence type specified" field: "SRC Blast_Database_Source ! States where the sequences came from, e.g., genbank, refseq, trace, etc." field: "KEYW Search_Term ! Search term identifying this database entry" field: "PRJ NCBI_Genome_Project_ID ! NCBI Genome Project Identifier" field: "GPB Gpipe_Build_Name ! Gpipe Build" field: "WGPR NCBI_WGS_Project_ID ! NCBI WGS Project Identifier" ] DB books [ type: "" format: "" comment: "Books Index Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "AUTH Author ! Section's author" field: "CA Corporate_Author ! Corporate Author of publication" field: "FA Full_Author_Name ! Full Author Name(s) of publication" field: "FE Full_Editor_Name ! f" field: "TITL Title ! Section's title" field: "TYPE Type ! Section's type" field: "STXT Secondary_Text ! Special text word" field: "CONP Concept_Phrases ! Generated keywords" field: "BOOK Book ! ID of the book that contains the document" field: "PMID PMID ! PubMed ID" field: "RMID RefPMID ! Citation search by PmId" field: "RID Rid ! Book internal ID" field: "PUBN Publisher ! Publisher's Name" field: "PDAT Publication_Year ! Publication Year" field: "ISBN ISBN ! ISBN" field: "ATTR Attribute ! Attributes in key value ordered pairs" field: "EDIT Editor ! Section's Editor" field: "RD Release_Date ! Release Date" field: "SUB Subject ! Subject" field: "RT Resource_Type ! Resource Type" field: "AID Accession_ID ! Accession ID" field: "BACI Book_Accession_ID ! Book Accession ID" field: "CHID Chapter_Accession_ID ! Chapter Accession ID" ] DB cancerchromosomes [ type: "" format: "" comment: "SKYCGH Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "TXID Organism ! Taxonomy ID" field: "GEND Gender ! Gender" field: "DSST Disease-Status ! Disease Status" field: "TISS Tissue ! Tissue" field: "TREA Treatment ! Treatment performed" field: "HERD HeredySyndrm ! Hereditary Syndrome" field: "AUTH Reference ! Citation" field: "SUBM Submitter ! Submitter's Name" field: "CASE CaseName ! Case Name" field: "SFKY Karyotype ! Short Form Karyotype" field: "BKPT Breakpoints ! Breakpoints from SKY, Deduced for CGH Analysis" field: "JUNC Junctions ! Junctions" field: "NCHR NumericAbnorm ! Normal Chromosomes Increased/Decreased" field: "ACHR StructAbnorm ! Abnormal Chromosomes" field: "BAND Bands-Amp_Del ! Bands involved in an amplification/deletion" field: "DIAG Diagnosis ! Diagnosis/Morphology" field: "SITE Site ! Site/Topography" field: "STGE Disease-Stage ! Disease Stage" field: "RODT RodentInfo ! Strain/Genotype/Addn Information found in Rodent(s)" field: "CLNM CellLine ! Name of any Cell Line" field: "ICDO ICD03-Code ! ICD-0-3 code for Diagnosis/Site" field: "COMM AddnInfo ! Any other information" field: "TECH CytoTech ! Which Cytogenetic Technique used" field: "DB Database ! Which database -Mitelman or Skycgh" field: "CSID CaseId ! case identifiers from source database" field: "PSEU PseudoDoc ! PseudDoc Cytogenetic/Clinical" field: "VIEW DocType ! Either case docsum view/cell view" ] DB cdd [ type: "" format: "" comment: "Conserved Domain Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "ACCN Accession ! Unique text identifier for a CD" field: "DB Database ! Which database CD is from (pfam, smart ...)" field: "TITL Title ! The short descriptive name of a CD, e.g. Rho" field: "STTL Subtitle ! A short description of the CD" field: "WORD Text_Word ! The long description of the CD" field: "ORGN Organism ! The root taxonomy node of a CD" field: "PDAT Publication_Date ! The date a CD was published" field: "MDAT Modification_Date ! The date a CD was last modified" field: "PLEN PssmLength ! Length of the PSSM or domain search model" field: "AACN Alternative_Accession ! Alternative unique text identifier for a CD, from source database" field: "STRP Structure_Representative ! The number of structures in a CD" field: "SD The_description_of_sites ! The desription of functional sites in a domain" field: "NS Number_of_Sites ! The number of functional sites in a domain" ] DB gap [ type: "" format: "" comment: "dbGaP Data" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "DISC Discriminator ! Discriminator" field: "OBJ Object_Type ! Object Type" field: "ANCE Ancestor ! Ancestor" field: "BELO Belongs_To ! Belongs To" field: "ATTR Attribution ! Attribution" field: "RTST Is_Root_Study ! Is Root Study" field: "TLST Is_Top-Level_Study ! Is Top-Level Study" field: "STID Study_ID ! Study ID" field: "STNM Study_Name ! Study Name" field: "DIS Disease ! Disease" field: "PROJ Project ! Project" field: "GENO Genotype_Platform ! Genotype Platform" field: "SRA Study_Has_SRA_Components ! Study Has SRA components" field: "STUD Study ! Study" field: "HASV Has_Variable ! Has Variable" field: "VRID Variable_ID ! Variable ID" field: "VRNM Variable_Name ! Variable Name" field: "VAR Variable ! Variable" field: "HASD Has_Document ! Has Document" field: "DCID Document_ID ! Document ID" field: "DCNM Document_Name ! Document Name" field: "DOC Document ! Document" field: "DOCP Document_Part ! Document Part" field: "HASA Has_Analysis ! Has Analysis" field: "ANID Analysis_ID ! Analysis ID" field: "ANNM Analysis_Name ! Analysis Name" field: "ANLS Analysis ! Analysis" field: "HAST Has_Dataset ! Has Dataset" field: "DSID Dataset_ID ! Dataset ID" field: "DSNM Dataset_Name ! Dataset Name" field: "DS Dataset ! Dataset" field: "PX PhenX ! PhenX" field: "HASP Has_PhenX_Mapping ! Has PhenX Mapping" ] DB dbvar [ type: "" format: "" comment: "dbVar records" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "ACC Accession ! Accession of any internal or external identifier. Versions removed from GENBANK accessions." field: "ACCV Accession_Version ! Accession and version of GENBANK accessions used in variant sequence or support." field: "LAB Submitters_affiliation ! Submitter's affiliation name" field: "VALS Alias_for_a_variant ! Alias for a variant" field: "ALOR Allele_origin ! Allele origin (controlled vocabulary), including Both=Germline+Somatic" field: "ALTP Allele_type ! Allele type (controlled vocabulary)" field: "ASSM Assembly_name ! Assembly of placement" field: "ASAC Assembly_accession ! Assembly accession of placement" field: "AORG Assembly_organism ! Assembly organism names (exploded)" field: "ATAX Assembly_taxonomy_ID ! Assembly taxonomy ID" field: "AUTH Journal_author ! All authors included in journal" field: "BLCK Block_Start ! Start of a 100k block on chromosome containing the variant." field: "CH Chromosome ! Chromosome of placement" field: "CHRA Chromosome_Accession ! Chromosome of placement, using accession.version" field: "CHRE Chromosome_end ! End of placement on chromosome" field: "CHRS Chromosome_start ! Start of placement on chromosome" field: "INRE Chromosome_inner_end ! Inner end of placement on chromosome" field: "INRS Chromosome_inner_start ! Inner start of placement on chromosome" field: "OTRE Chromosome_outer_end ! Outer end of placement on chromosome" field: "OTRS Chromosome_outer_start ! Outer start of placement on chromosome" field: "CLIN Clinical_interpretation_of_a_variant ! Clinical interpretation of a variant (controlled vocabulary)" field: "CTG Unplaced_Contig_accession ! Contig of placement, when not on a chromosome, using accession.version" field: "DET Detection_method ! Detection method" field: "DESC Variant_description ! Variant description" field: "DDAT Discontinued_date ! dbVar discontinued date" field: "ESSV Numeric_portion_of_EBI_Support_Variant_ID ! Numeric portion of EBI Support Variant ID (essv)" field: "ESTD Numeric_portion_of_EBI_Study_ID ! Numeric portion of EBI Study ID (estd)" field: "ESV Numeric_portion_of_EBI_Variant_ID ! Numeric portion of EBI Variant ID (esv)" field: "GENE Gene_name_or_alias ! Name or alias of gene at same location as variant" field: "GNID Entrez_Gene_ID ! Gene ID of gene at same location as variant" field: "LIB Library_abbreviation ! Library name used in the Method" field: "MPLT Method_platform ! Method platform" field: "MSUB Method_submission_name ! Submission name of individual method, used when study contains multiple methods from different submitters, as does the curated dataset." field: "METH Method_type ! Method type (controlled vocabulary)" field: "MCAT Method_type_category ! Used for sorting and display. Methods are categorized as: probe, mapping, sequencing." field: "MWGT Method_type_weight ! used for sorting. BAC=all Method_type values of study or variant are BAC aCGH, Non-BAC=study or variant has at least 1 method_type that is other than BAC aCGH" field: "MESH MeSH_ID ! Medical Subject Headings (MeSH) ID (exploded)" field: "NSSV Numeric_portion_of_NCBI_Support_Variant_ID ! Numeric portion of NCBI Support Variant ID (nssv)" field: "NST Numeric_portion_of_NCBI_Study_ID ! Numeric portion of NCBI Study ID (nstd)" field: "NSV Numeric_portion_of_NCBI_Variant_ID ! Numeric portion of NCBI Variant ID (nsv)" field: "OT Object_type ! Object type in dbVar (STUDY, VARIANT)" field: "ORG Organism ! Organism name (exploded)" field: "PDA Submitter_PDA_login ! Submitter PDA login" field: "PHEN Phenotype ! Phenotype of sample/subject study or reference specimen" field: "PTYP Placement_type ! Placement type (controlled vocabulary)" field: "PMID PubMed_ID ! Unique identifier from PubMed" field: "GPRJ Genome_Projects_ID ! Unique identifier from Genome Projects" field: "PRNM Genome_Projects_name ! Name from Genome Projects corresponding to Project_ID" field: "PDAT Journal_Publication_date ! Journal Publication date" field: "SSV Support_Variant_accession ! Support Variant dbVar ID (essv or nssv)" field: "ST Study_accession ! Study dbVar ID (estd or nstd)" field: "SV Variant_accession ! Variant dbVar ID (esv or nsv)" field: "SMPL Sample ! Sample/subject ID of study or reference specimen" field: "SC Sample_count ! Number of samples in study" field: "STDE Study_description ! Study description" field: "STDN Study_display_name ! Study display name" field: "STDY Study_ID ! Study, batch or submission ID" field: "STYP Study_Type ! Study type assigned by NCBI" field: "SVAR Submitter_variant_ID ! Submitter variant ID" field: "SUPH Subject_Phenotype_status ! Boolean subject phenotype status: 0=not affected/null; 1 = affected" field: "SUB Submitter_Name ! Submitter first and last name" field: "SSVC Support_Variant_count ! Number of supporting variants in variant" field: "TXID Taxonomy_ID ! Taxonomy ID" field: "MDAT Modification_Date ! dbVar Modification Date" field: "VAL Validation_method ! Validation method (controlled vocabulary)" field: "VSTA Validation_result ! Boolean validation status: null=not validated, 0=validated with result=0; 1 = validated with result=1" field: "VWGT Validation_result_weight ! 0=not validated, 1=validated with result=0; 2 = validated with result=1" field: "VC Variant_count ! Number of variants in study" field: "VLEN Variant_size ! Size of variant" field: "VT Variant_type ! Variant type (controlled vocabulary)" ] DB epigenomics [ type: "" format: "" comment: "Epigenomics Entrez Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "WORD Text_Word ! Text" field: "TITL Title ! Title" field: "TXID Taxonomy_ID ! TaxId" field: "ACCN Accession ! Accession number of sequence" field: "KYWD Keyword ! Keyword" field: "AUTH Author ! Author" field: "PRID Project_ID ! ProjectId" field: "DOCT Document_Type ! DocType" field: "CDAT Create_Date ! CreateDate" field: "MDAT Update_Date ! UpdateDate" field: "ORGN Organism ! scientific and common names of organism" ] DB gene [ type: "text" format: "" comment: "Gene database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to a gene record" field: "FILT Filter ! Limits the records" field: "TITL Gene_Protein_Name ! gene or protein name" field: "WORD Text_Word ! Free text associated with record" field: "ORGN Organism ! scientific and common names of organism" field: "MDAT Modification_Date ! The last date on which the record was updated" field: "CHR Chromosome ! Chromosome number or numbers; also 'mitochondrial', 'unknown' properties" field: "MV Default_Map_Location ! Chromosomal map location as displayed in MapViewer" field: "GENE Gene_Name ! Symbol or symbols of the gene" field: "ECNO EC_RN_Number ! EC number for enzyme or CAS registry number" field: "MIM MIM ! MIM number from OMIM" field: "DIS Disease_Phenotype ! Name(s) of diseases associated with this gene. When available, OMIM name will be used" field: "ACCN Nucleotide_Protein_Accession ! Nucleotide or protein accession(s) associated with this gene" field: "UGEN UniGene_Cluster_Number ! UniGene cluster number for this gene" field: "PROP Properties ! Properties of Gene record" field: "CDAT Creation_Date ! The date on which this record first appeared" field: "NCAC Nucleotide_Accession ! nucleotide accessions of seqeunces" field: "NUID Nucleotide_UID ! nucleotide uids of sequences" field: "PACC Protein_Accession ! protein accessions" field: "PUID Protein_UID ! protein uids" field: "PMID PubMed_ID ! PubMed ids of accessions linked to the record" field: "TID Taxonomy_ID ! taxonomy id" field: "GO Gene_Ontology ! Gene Ontology" field: "DOM Domain_Name ! Domain Name" field: "DDAT Date_Discontinued ! The date on which the record was discontinued" field: "CPOS Base_Position ! Chromosome base position" field: "GFN Gene_Full_Name ! Gene full name" field: "PFN Protein_Full_Name ! Protein full name" field: "GL Gene_Length ! Gene length" field: "XC Exon_Count ! Exon count" field: "GRP Group ! Relationships for this gene" field: "PREF Preferred_Symbol ! Preferred symbol of the gene" ] DB gensat [ type: "" format: "" comment: "GENSAT Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "IMID Image_ID ! Image ID" field: "GENE Gene_Name ! Gene Name" field: "GSYM Gene_Symbol ! Gene Symbol" field: "GALI Gene_Alias ! Gene Alias or Synonym" field: "GI GenBank_ID ! Gi" field: "ACCN GenBank_Accession ! GenBank Accession" field: "ORGN Organism ! Exploded organism names" field: "BAC BAC_Address ! BAC Address" field: "BCMK BAC_Marker ! BAC Marker" field: "MGID MGI_ID ! MGI ID" field: "TECH Technique ! Technique" field: "STAN Stain ! Stain" field: "AGE Age ! Age" field: "SEX Sex ! Sex" field: "SECP Section_Plane ! Section plane" field: "SECL Section_Level ! Section level" field: "REGN Region ! Region" field: "CTYP Cell_Type ! Cell type" field: "STYP Cell_Subtype ! Cell Subtype" field: "EXPT Expression_Pattern ! Expression pattern" field: "EXPL Expression_Level ! Expression level" ] DB gds [ type: "" format: "" comment: "GEO DataSets" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "ORGN Organism ! exploded organism names" field: "ACCN GEO_Accession ! accession for GDS (DataSet), GPL (Platform), GSM (Sample), GSE (Series)" field: "TITL Title ! Words in title of record" field: "DESC Description ! Text from description, summary and other similar fields" field: "SFIL Supplementary_Files ! Supplementary Files" field: "ETYP Entry_Type ! Entry type (DataSet or Series)" field: "STYP Sample_Type ! Sample type" field: "VTYP Sample_Value_Type ! type of values, e.g. log ratio, count" field: "PTYP Platform_Technology_Type ! Platform technology type" field: "GTYP DataSet_Type ! type of dataset" field: "NSAM Number_of_Samples ! Number of samples" field: "SRC Sample_Source ! sample source" field: "AUTH Author ! author of the GEO Sample, Platform or Series" field: "INST Submitter_Institute ! institute, or organization affiliatedd with contributers" field: "NPRO Number_of_Platform_Probes ! number of platform probes" field: "SSTP Subset_Variable_Type ! subset variable type" field: "SSDE Subset_Description ! subset description" field: "GEID Reporter_Identifier ! name or identifier for the spot, e.g. GenBank, UniGene ID, Locus Link ID etc." field: "PDAT Publication_Date ! publication date from the GEO related entities" field: "UDAT Update_Date ! date" field: "TAGL Tag_Length ! Tag/Signature length for SAGE/MPSS" field: "RGSE Related_Series ! Related Series" field: "RGPL Related_Platform ! Related Platform" field: "MESH MeSH_Terms ! Medical Subject Headings" field: "PROJ Project ! Project" ] DB geo [ type: "" format: "" comment: "Genes Expression Omnibus" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "ORGN Organism ! Exploded organism names" field: "ACCN GEO_Accession ! Accession for GDS (DataSet), GPL (Platform), GSM (Sample), GSE (Series)" field: "GDST GDS_Text ! GDS text from title and description" field: "GEOT GEO_Description_Title_Text ! Sample titles" field: "RTYP Platform_Reporter_Type ! Platform reporter type, e.g. genbank, clone, orf" field: "GTYP DataSet_Type ! Type of dataset" field: "VTYP Sample_Value_Type ! Sample value type, e.g. log ratio, count" field: "NSAM Number_of_Samples ! Number of samples" field: "SRC Sample_Source ! Sample source" field: "ID ID_REF ! Spot ID from GEO Platform, SAGE tag, Affy ProbeSet ID" field: "NAME Reporter_Identifier ! Name or identifier for the spot, e.g. GenBank accession, CLONE_ID, ORF etc." field: "SYMB Gene_Symbol ! Gene symbol (name) from Entrez-Gene or Entrez-UniGene." field: "GDSC Gene_Description ! Gene Description" field: "RSTD Ranked_Standard_Deviation ! Ranked standard deviation" field: "RMAX Max_Value_Rank ! Maximal value of ranks" field: "RMIN Min_Value_Rank ! Minimal value of ranks" field: "FINF Flag_Information ! Indicates an interesting or notable uid in the GDS context" field: "FTYP Flag_Type ! Type of flag that indicates a uid of interest, or outliers etc." field: "GI GI ! GenBank Identifier" field: "ATYP Annotation_Type ! Type of annotation (gene, unigene, nucleotide)" field: "GO Gene_Ontology ! Gene Ontology" field: "CHR Chromosome ! Chromosomes" field: "CPOS Base_Position ! Chromosome base position" ] DB geoprofiles [ type: "" format: "" comment: "Genes Expression Omnibus" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "ORGN Organism ! Exploded organism names" field: "ACCN GEO_Accession ! Accession for GDS (DataSet), GPL (Platform), GSM (Sample), GSE (Series)" field: "GDST GDS_Text ! GDS text from title and description" field: "GEOT GEO_Description_Title_Text ! Sample titles" field: "RTYP Platform_Reporter_Type ! Platform reporter type, e.g. genbank, clone, orf" field: "GTYP DataSet_Type ! Type of dataset" field: "VTYP Sample_Value_Type ! Sample value type, e.g. log ratio, count" field: "NSAM Number_of_Samples ! Number of samples" field: "SRC Sample_Source ! Sample source" field: "ID ID_REF ! Spot ID from GEO Platform, SAGE tag, Affy ProbeSet ID" field: "NAME Reporter_Identifier ! Name or identifier for the spot, e.g. GenBank accession, CLONE_ID, ORF etc." field: "SYMB Gene_Symbol ! Gene symbol (name) from Entrez-Gene or Entrez-UniGene." field: "GDSC Gene_Description ! Gene Description" field: "RSTD Ranked_Standard_Deviation ! Ranked standard deviation" field: "RMAX Max_Value_Rank ! Maximal value of ranks" field: "RMIN Min_Value_Rank ! Minimal value of ranks" field: "FINF Flag_Information ! Indicates an interesting or notable uid in the GDS context" field: "FTYP Flag_Type ! Type of flag that indicates a uid of interest, or outliers etc." field: "GI GI ! GenBank Identifier" field: "ATYP Annotation_Type ! Type of annotation (gene, unigene, nucleotide)" field: "GO Gene_Ontology ! Gene Ontology" field: "CHR Chromosome ! Chromosomes" field: "CPOS Base_Position ! Chromosome base position" ] DB homologene [ type: "" format: "" comment: "HomoloGene Entrez Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "TITL Title ! Words in title of publication" field: "WORD Text_Word ! Free text associated with record" field: "PROP Properties ! Properties (formerly Keyword)" field: "ORGN Organism ! scientific and common names of organism" field: "GNID Gene_ID ! Gene ID" field: "GENE Gene_Name ! Gene Name" field: "GDSC Gene_Description ! Description of gene" field: "PUID Protein_UID ! protein uids" field: "PRAC Protein_Accession ! protein accessions" field: "NUID Nucleotide_UID ! nucleotide uids of sequences" field: "NCAC Nucleotide_Accession ! nucleotide accessions of seqeunces" field: "UGID UniGene_ID ! UniGene ID" field: "ANCS Ancestor ! scientific and common names of ancestor organism" field: "DOM Domain_Name ! Domain Name" ] DB journals [ type: "text" format: "text" comment: "Journals Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "TITL Title ! Document title" field: "ESSN eISSN ! eISSN" field: "PSSN pISSN ! pISSN" field: "ISSN ISSN ! ISSN" field: "MABR Title_Abbreviation ! Title Abbreviation" field: "ISOA ISO_Abbreviation ! ISO Abbreviation" field: "MULT Multi ! Multi" field: "ID NLM_ID ! NlmId" field: "ALIA Alias ! Alias" field: "ST Subject_Terms ! Subject Terms" field: "WORD Text_Word ! Text Word" field: "SYR Start_Year ! First year of publication" field: "EYR End_Year ! Last year of publication" field: "LANG Language ! Language the title is published in" field: "CNTY Place_of_Publication ! Place of publication" field: "XS Indexing_Subset ! Indexing Subset" ] DB mesh [ type: "" format: "" comment: "MeSH Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "TN Tree_Number ! Tree Number" field: "MESH MeSH_Terms ! MeSH Terms" field: "SUBS Supplementary_Concept ! Supplementary Concept" field: "WORD Text_Word ! Free text" field: "ALSO See_Also ! See Also" field: "PREV Previous_Indexing ! Previous Indexing" field: "NOTE Scope_Note ! Scope Note" field: "REG Registry_Number ! Registry Number" field: "MULT Multi ! Multi" field: "TYPE Record_Type ! Record type - main heading, subheading, pharmacological action, substance name, publication type" ] DB ncbisearch [ type: "" format: "" comment: "Index of NCBI web pages" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "TITL Title ! Document title" field: "KYWD Keyword ! Keyword from meta tag" field: "DESC Description ! Description from meta tag" field: "WORD Text_Word ! Free text from page" field: "CAT Category ! Category assigned to page" field: "MDAT Modification_Date ! Date of last update" field: "HOME Homepage_Title ! Home page title" field: "HURL Homepage_URL ! Home page URL" field: "URL URL ! URL of page" field: "MNAM META_Name ! META Name" field: "MCON META_Content ! META Content" field: "AUTH Author ! Author(s) of web page" ] DB nlmcatalog [ type: "" format: "" comment: "NLM Catalog Entrez Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "ITAG Abstract_Index_Tags ! Abstract/Index Tags" field: "AUTH Author ! Author(s) of publication" field: "FULL Author_Full_Name ! Full Names of Authors" field: "CALL Call_Number ! Call Number" field: "CNAM Corporate_Conference_Name ! Corporate/Conference Name" field: "ITEM Item_Type ! Item Type" field: "JOUR Journal ! Journal" field: "LANG Language ! Language of publication" field: "RTYP Resource_Type ! Resource Type" field: "MESH MeSH_Terms ! Medical Subject Headings assigned to publication" field: "MAJR MeSH_Major_Topic ! MeSH terms of major importance to publication" field: "SUBH MeSH_Subheading ! Additional specificity for MeSH term" field: "OLIO Olio ! Olio" field: "OTHR Other_Number ! Other Number" field: "OTRM Other_Term ! Other terms associated with publication" field: "PERS Personal_Name_as_Subject ! Personal Name as Subject" field: "FPER Personal_Full_Name_as_Subject ! Full Personal Name as Subject" field: "CNTY Country_of_Publication ! Country of publication" field: "PDAT Publication_Year ! Year of publication" field: "PSTA Publication_Status ! Status of publication" field: "PTYP Publication_Type ! Type of publication (e.g., review)" field: "PUBL Publisher ! Publisher" field: "SERI Series ! Series" field: "TITL Title ! Words in title of publication" field: "URL URL ! URL" field: "NID NLM_Unique_ID ! NLM Unique ID" field: "EDAT Entrez_Date ! Date publication first accessible through Entrez" field: "AI Authority_Information ! Authority Information" field: "AIID AIID ! Authority ID" field: "WORD Text_Word ! Text" field: "ST Broad_Subject_Term ! Broad Subject Term" field: "CFS Current_Format_Status ! Current Format Status" field: "XS Indexing_Subset ! Indexing Subset" field: "ISO ISO_Abbreviation ! ISO Abbreviation" field: "SYR Publication_Start_Year ! Publication Start Year" field: "EYR Publication_End_Year ! Publication End Year" field: "IS ISSN ! ISSN" field: "MABR NLM_Title_Abbreviation ! NLM Title Abbreviation" field: "MULT Multi ! Multi" ] DB omia [ type: "" format: "" comment: "OMIA records" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "OMIA Group_ID ! Group ID" field: "PNID Phene_ID ! Phene ID is species-specific identifier" field: "PHEN Phenotype ! Observable trait" field: "GNID Gene_ID ! Gene ID" field: "GENE Gene_Name ! gene name" field: "PMID PubMed_ID ! PubMed IDs of accessions linked to the record" field: "TXID Taxonomy_ID ! NCBI Unique taxonomy ID" field: "ORGN Organism ! Organism name" field: "OID OMIM_ID ! Unique identifier" field: "WORD Text_Word ! Free text associated with record" ] DB omim [ type: "text" format: "text" comment: "OMIM records" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID MIM ! Unique number assigned to OMIM record" field: "FILT Filter ! Limits the records" field: "TITL Title ! Words in title of record" field: "WORD Text_Word ! Free text associated with record" field: "AUTH Contributor ! Contributor to OMIM record" field: "CLIN Clinical_Synopsis ! Clinical features of disorder" field: "MDAT Modification_Date ! The last date on which the record was updated" field: "ALVR Allelic_Variant ! A subset of disease-producing mutations" field: "MDHS Modification_History ! All dates on which the record was updated" field: "REFR Reference ! Authors and titles of citations" field: "GMAP Gene_Map ! Chromosomal map location" field: "DSDR Gene_Map_Disorder ! Text word in disorder" field: "GENE Gene_Name ! Name of gene associated with record" field: "ECNO EC_RN_Number ! EC number for enzyme or CAS registry number" field: "CHR Chromosome ! Chromosome number; also 'mitochondrial', 'unknown' properties" field: "EDTR Editor ! A username of an OMIM record Editor" field: "PROP Properties ! Properties of OMIM record" field: "PDAT Publication_Date ! The date on which this record first appeared" field: "CSK Clinical_Synopsis_Key ! The keyword designating a part of the Clinical Synopsis" field: "CSED Clinical_Synopsis_Editor ! A username of an OMIM record Editor" field: "CSDT Clinical_Synopsis_Date ! The last date on which the Clinical Synopsis was updated" ] DB pmc [ type: "text" format: "text" comment: "PubMed Central" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "PMID PubMed_ID ! Unique identifier from PubMed" field: "AUTH Author ! Author(s) of publication" field: "TITL Title ! A short descriptive name" field: "PDAT Publication_Date ! Date of publication" field: "ABST Abstract ! Abstract" field: "CAPT Figure_Table_Caption ! Caption" field: "SECT Section_Title ! Section Title" field: "REFR Reference ! Reference" field: "REFA Reference_Author ! Name of Reference author(s)" field: "RPID Reference_PubMed_ID ! Reference Unique identifier from PubMed" field: "JOUR Journal ! Source journal of publication" field: "VOL Volume ! Volume number of publication" field: "ISS Issue ! Issue number of publication" field: "PAGE Pagination ! Page number(s) of publication" field: "EPDT Electronic_Publication_Date ! Date publication first accessible through Entrez" field: "WORD Text_Word ! Free text associated with publication" field: "ARTI Body_-_All_Words ! Article Body" field: "KWD Body_-_Key_Terms ! Keyword" field: "METH Methods_-_Key_Terms ! Keyword in the Methods Section" field: "MESH MeSH_Terms ! Medical Subject Headings assigned to publication" field: "MAJR MeSH_Major_Topic ! Medical terms of major importance assigned to publication" field: "SUBH MeSH_Subheading ! Additional specificity for MeSH Terms" field: "ECNO EC_RN_Number ! EC number for enzyme or CAS registry number" field: "SUBS Substance_Name ! CAS chemical name or MEDLINE Substance Name" field: "AFFL Affiliation ! Author's institutional affiliation and address" field: "LDAT PMC_Live_Date ! PMC live date" field: "ORGN Organism ! scientific and common names of organism" field: "ONSN Organism_Unsynonymized ! Unsynonymized organism names" field: "ACCN Accession ! Accession number of sequence" field: "EDAT Entrez_Date ! Entrez date" field: "DOI DOI ! Digital Object Identifier" field: "FULL Full_Author_Name ! Full Author Name(s) of publication" field: "GRNT Grant_Number ! NIH Grant Numbers" field: "ACK Acknowledgments ! Acknowledgments" field: "PPDT Print_Publication_Date ! Print Publication Date" ] DB popset [ type: "text" format: "" comment: "PopSet sequence record" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to each sequence" field: "FILT Filter ! Limits the records" field: "WORD Text_Word ! Free text associated with record" field: "TITL Title ! Words in definition line" field: "KYWD Keyword ! Nonstandardized terms provided by submitter" field: "AUTH Author ! Author(s) of publication" field: "JOUR Journal ! Journal abbreviation of publication" field: "VOL Volume ! Volume number of publication" field: "ISS Issue ! Issue number of publication" field: "PAGE Page_Number ! Page number(s) of publication" field: "ORGN Organism ! Scientific and common names of organism, and all higher levels of taxonomy" field: "ACCN Accession ! Accession number of sequence" field: "PACC Primary_Accession ! Does not include retired secondary accessions" field: "GENE Gene_Name ! Name of gene associated with sequence" field: "PROT Protein_Name ! Name of protein associated with sequence" field: "ECNO EC_RN_Number ! EC number for enzyme or CAS registry number" field: "PDAT Publication_Date ! Date sequence added to GenBank" field: "MDAT Modification_Date ! Date of last update" field: "SUBS Substance_Name ! CAS chemical name or MEDLINE Substance Name" field: "PROP Properties ! Classification by source qualifiers and molecule type" field: "SQID SeqID_String ! String identifier for sequence" field: "GPRJ BioProject ! BioProject" field: "FKEY Feature_key ! Feature annotated on sequence" field: "PCNT Protein_Count ! Number of proteins in the set" field: "NCNT Nucleotide_Count ! Number of nucleotides in the set" ] DB probe [ type: "" format: "" comment: "Entrez Probe Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "AUTH Author ! Author" field: "DIST Distributor ! Distributor" field: "GENE Gene_Name ! Gene Name" field: "GNID Gene_ID ! Gene ID" field: "KYWD Keyword ! Keyword" field: "ORGN Organism ! Organism" field: "PRNM Probe_Name ! Probe Name" field: "PRTY Probe_Type ! Probe Type" field: "PROP Properties ! Properties" field: "WORD Text_Word ! Text Word" field: "TITL Title ! Title" field: "CAPT Caption ! Caption" field: "SUBM Submission ! Submission" field: "PROJ Project ! Project" field: "SEQ Sequence ! Sequence" ] DB proteinclusters [ type: "" format: "" comment: "Protein Cluster record" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "ACCN Accession ! Accession" field: "PMID PubMed_ID ! PubMed ID" field: "TITL Title ! Title" field: "GENE Gene_Name ! Gene Name" field: "GSYN Gene_Synonym ! Gene Synonym" field: "COG COG ! Clusters of Orthologous Groups of proteins" field: "ECNO EC_RN_Number ! EC number for enzyme or CAS registry number" field: "HMAP HAMAP ! HAMAP" field: "KO KO ! KO" field: "PROT Protein_Name ! Name of protein" field: "PACC Protein_Accession ! Protein Accession" field: "LTAG Locus_Tag ! Locus Tag" field: "SLEN Sequence_Length ! Length of sequence" field: "ORGN Organism ! Scientific and common names of organism, and all higher levels of taxonomy" field: "TXID Taxonomy_ID ! Taxonomy ID" field: "CDAT Creation_Date ! Creation Date" field: "MDAT Modification_Date ! Modification Date" field: "SIZE Size ! Size" field: "DOM Domain_Name ! Domain Name" field: "DOMS Domains ! Domains" field: "PUID Protein_GI ! Protein GI" field: "PARA Paralogs ! Paralogs" field: "COGG COG_group ! COG group" field: "AVGL Average_Length ! Average Length" field: "PROP Properties ! Properties" field: "TPUB Total_Publications ! Total Publications" field: "SPCN SwissProt_Accession ! SwissProt Accession" field: "CONS Conserved_In ! Conserved In" ] DB pcassay [ type: "" format: "" comment: "PubChem BioAssay Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID AssayID ! Assay ID" field: "FILT Filter ! Limits the records" field: "ANAM AssayName ! AssayName" field: "ADES AssayDescription ! AssayDescription" field: "APRL AssayProtocol ! AssayProtocol" field: "CCMT CategorizedComment ! CategorizedComment" field: "ACMT AssayComment ! AssayComment" field: "TNAM TidName ! TidName" field: "TDES TidDescription ! TidDescription" field: "RC ReadoutCount ! ReadoutCount" field: "SRID SubstanceSourceID ! External substance source identifier" field: "ASRD AssaySourceID ! External assay source identifier" field: "ACMD ActivityOutcomeMethod ! ActivityOutcomeMethod" field: "SNME SourceName ! SourceName" field: "CSNM CurrentSourceName ! CurrentSourceName" field: "DDAT DepositDate ! DepositDate" field: "MDAT ModifyDate ! ModifyDate" field: "JDAT JournalPublicationDate ! JournalPublicationDate" field: "JNAM JournalName ! JournalName" field: "HDAT HoldUntilDate ! HoldUntilDate" field: "AC ActiveSidCount ! ActiveSidCount" field: "IAC InactiveSidCount ! InactiveSidCount" field: "IC InconclusiveSidCount ! InconclusiveSidCount" field: "TSC TotalSidCount ! TotalSidCount" field: "TCNT TargetCount ! TargetCount" field: "ACC ActiveCidCount ! ActiveCidCount" field: "PCC ProbeCidCount ! ProbeCidCount" field: "PSC ProbeSidCount ! ProbeSidCount" field: "IACC InactiveCidCount ! InactiveCidCount" field: "ICC InconclusiveCidCount ! InconclusiveCidCount" field: "UCC UnspecifiedCidCount ! UnspecifiedCidCount" field: "USC UnspecifiedSidCount ! UnspecifiedSidCount" field: "TCC TotalCidCount ! TotalCidCount" field: "NARD NucleicAcidReagentID ! NucleicAcidReagentID" field: "XRCT XRefComment ! XRefComment" field: "XRPD XRefPmid ! XRefPmid" field: "XRGI XRefGi ! XRefGi" field: "XRMB XRefMmdb ! XRefMmdb" field: "XRGN XRefGene ! XRefGeneID" field: "XRDL XRefDburl ! XRefDburl" field: "XRSL XRefSburl ! XRefSburl" field: "XRAL XRefAsurl ! XRefAsurl" field: "XRPI XRefProteingi ! XRefProteingi" field: "XRNI XRefNucleotidegi ! XRefNucleotidegi" field: "XRTY XRefTaxonomy ! XRefTaxonomy" field: "XRAD XRefAid ! XRefAid" field: "XRMM XRefOmim ! XRefOmim" field: "SIDA SubstanceIDActive ! SubstanceIDActive" field: "SIDT SubstanceIDTested ! SubstanceIDTested" field: "CIDA CompoundIDActive ! CompoundIDActive" field: "CIDT CompoundIDTested ! CompoundIDTested" field: "MHDA MeSHDescriptionActive ! MeSHDescriptionActive" field: "MHDT MeSHDescriptionTested ! MeSHDescriptionTested" field: "MHTA MeSHTermActive ! MeSHTermActive" field: "MHTT MeSHTermTested ! MeSHTermTested" field: "PTN ProteinTargetName ! ProteinTargetName" field: "GSYM GeneSymbol ! GeneSymbol" field: "PTC ProteinTargetComment ! ProteinTargetComment" field: "PTD ProteinTargetDescription ! ProteinTargetDescription" field: "BST BioSystemsTitle ! The name of the BioSystems, via Protein target" field: "CCT CategorizedCommentTitle ! The name of the categorized comment" field: "PTGI ProteinTargetGI ! ProteinTargetGI" field: "BSID BioSystemsID ! ID of the BioSystems, via Protein Target" field: "PIGI PigGI ! PigGI" field: "RTGI RNATargetGI ! RNATargetGI" field: "SYNA SynonymActive ! SynonymActive" field: "SYNT SynonymTested ! SynonymTested" field: "PHAA PharmActionActive ! PharmActionActive" field: "PHAT PharmActionTested ! PharmActionTested" field: "SRCC SourceCategory ! SourceCategory" field: "TXNM TaxonomyName ! TaxonomyName" field: "TC TestedConcentration ! TestedConcentration" field: "GRN GrantNumber ! GrantNumber" field: "NSAM NumberofSidsWithActivityConcmicromolar ! NumberofSidsWithActivityConcmicromolar" field: "NCAM NumberofCidsWithActivityConcmicromolar ! NumberofCidsWithActivityConcmicromolar" field: "NSAN NumberofSidsWithActivityConcnanomolar ! NumberofSidsWithActivityConcnanomolar" field: "NCAN NumberofCidsWithActivityConcnanomolar ! NumberofCidsWithActivityConcnanomolar" ] DB pccompound [ type: "" format: "" comment: "PubChem Compound Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID CompoundID ! Compound ID" field: "FILT Filter ! Limits the records" field: "SRC SourceName ! SourceName" field: "SRID SourceID ! SourceID" field: "SRCC SourceCategory ! SourceCategory" field: "CDAT CreateDate ! CreateDate" field: "BAID BioAssayID ! BioAssayID" field: "AA ActiveAid ! ActiveAid" field: "IA InactiveAid ! InactiveAid" field: "INCH InChI ! InChI" field: "IKEY InChIKey ! InChIKey" field: "CSYN CompleteSynonym ! CompleteSynonym" field: "SYNO Synonym ! Synonym" field: "MSHT MeSHTerm ! MeSHTerm" field: "CMST CompleteMeSHTerm ! CompleteMeSHTerm" field: "MSHN MeSHTreeNode ! MeSHTreeNode" field: "PHMA PharmAction ! PharmAction" field: "MHD MeSHDescription ! MeSHDescription" field: "ELMT Element ! Element" field: "MW MolecularWeight ! MolecularWeight" field: "TFC TotalFormalCharge ! TotalFormalCharge" field: "UPAC IUPACName ! IUPACName" field: "XLGP XLogP ! XLogP" field: "CPLX Complexity ! Complexity" field: "RBC RotatableBondCount ! RotatableBondCount" field: "HBDC HydrogenBondDonorCount ! HydrogenBondDonorCount" field: "HBAC HydrogenBondAcceptorCount ! HydrogenBondAcceptorCount" field: "HAC HeavyAtomCount ! HeavyAtomCount" field: "ACC AtomChiralCount ! AtomChiralCount" field: "ACDC AtomChiralDefCount ! AtomChiralDefCount" field: "ACUC AtomChiralUndefCount ! AtomChiralUndefCount" field: "BCC BondChiralCount ! BondChiralCount" field: "BCDC BondChiralDefCount ! BondChiralDefCount" field: "BCUC BondChiralUndefCount ! BondChiralUndefCount" field: "IAC IsotopeAtomCount ! IsotopeAtomCount" field: "CUC CovalentUnitCount ! CovalentUnitCount" field: "TC TautomerCount ! TautomerCount" field: "AC ActiveAidCount ! ActiveAidCount" field: "IC InactiveAidCount ! InactiveAidCount" field: "TAC TotalAidCount ! TotalAidCount" field: "AAR ActiveAidRatio ! ActiveAidRatio" field: "SID SubstanceID ! SubstanceID" field: "TPSA TPSA ! TPSA" field: "ASRC AssaySourceName ! AssaySourceName" field: "EMAS ExactMass ! ExactMass" field: "MMAS MonoisotopicMass ! MonoisotopicMass" field: "ACON ActiveConcentration ! ActiveConcentration" field: "TCON TestedConcentration ! TestedConcentration" field: "VL3D Volume3D ! VOL3D" field: "X3D XStericQuadrupole3D ! X3D" field: "Y3D YStericQuadrupole3D ! Y3D" field: "Z3D ZStericQuadrupole3D ! Z3D" field: "PAID PharmActionID ! PharmActionID" field: "STID StructureID ! StructureID" field: "FC3D FeatureCount3D ! FeatureCount3D" field: "FAC3 FeatureAcceptorCount3D ! FeatureAcceptorCount3D" field: "FDC3 FeatureDonorCount3D ! FeatureDonorCount3D" field: "FNC3 FeatureAnionCount3D ! FeatureAnionCount3D" field: "FTC3 FeatureCationCount3D ! FeatureCationCount3D" field: "FRC3 FeatureRingCount3D ! FeatureRingCount3D" field: "FHC3 FeatureHydrophobeCount3D ! FeatureHydrophobeCount3D" field: "CMR3 ConformerModelRmsd3D ! ConformerModelRmsd3D" field: "ERC3 EffectiveRotorCount3D ! EffectiveRotorCount3D" field: "DCSY DepositorCompleteSynonym ! DepositorCompleteSynonym" field: "DSYN DepositorSynonym ! DepositorSynonym" field: "CCNT ConformerCount3D ! ConformerCount3D" ] DB pcsubstance [ type: "" format: "" comment: "PubChem Substance Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID SubstanceID ! Substance ID" field: "FILT Filter ! Limits the records" field: "SRC SourceName ! SourceName" field: "CSN CurrentSourceName ! CurrentSourceName" field: "SRID SourceID ! SourceID" field: "SRCC SourceCategory ! SourceCategory" field: "SRD SourceReleaseDate ! SourceReleaseDate" field: "DDAT DepositDate ! DepositDate" field: "MDAT ModifyDate ! ModifyDate" field: "BAID BioAssayID ! BioAssayID" field: "AA ActiveAid ! ActiveAid" field: "IA InactiveAid ! InactiveAid" field: "INCH InChI ! InChI" field: "IKEY InChIKey ! InChIKey" field: "CSYN CompleteSynonym ! CompleteSynonym" field: "SYNO Synonym ! Synonym" field: "MSHT MeSHTerm ! MeSHTerm" field: "CMST CompleteMeSHTerm ! CompleteMeSHTerm" field: "MSHN MeSHTreeNode ! MeSHTreeNode" field: "PHMA PharmAction ! PharmAction" field: "CMT Comment ! Comment" field: "MHD MeSHDescription ! MeSHDescription" field: "ELMT Element ! Element" field: "MW MolecularWeight ! MolecularWeight" field: "TFC TotalFormalCharge ! TotalFormalCharge" field: "UPAC IUPACName ! IUPACName" field: "XLGP XLogP ! XLogP" field: "CPLX Complexity ! Complexity" field: "RBC RotatableBondCount ! RotatableBondCount" field: "HBDC HydrogenBondDonorCount ! HydrogenBondDonorCount" field: "HBAC HydrogenBondAcceptorCount ! HydrogenBondAcceptorCount" field: "HAC HeavyAtomCount ! HeavyAtomCount" field: "ACC AtomChiralCount ! AtomChiralCount" field: "ACDC AtomChiralDefCount ! AtomChiralDefCount" field: "ACUC AtomChiralUndefCount ! AtomChiralUndefCount" field: "BCC BondChiralCount ! BondChiralCount" field: "BCDC BondChiralDefCount ! BondChiralDefCount" field: "BCUC BondChiralUndefCount ! BondChiralUndefCount" field: "IAC IsotopeAtomCount ! IsotopeAtomCount" field: "CUC CovalentUnitCount ! CovalentUnitCount" field: "TC TautomerCount ! TautomerCount" field: "AC ActiveAidCount ! ActiveAidCount" field: "IC InactiveAidCount ! InactiveAidCount" field: "TAC TotalAidCount ! TotalAidCount" field: "AAR ActiveAidRatio ! ActiveAidRatio" field: "SCID StandardizedCID ! StandardizedCID" field: "CCID ComponentCID ! ComponentCID" field: "NCID NeutralizedCID ! NeutralizedCID" field: "CID CompoundID ! CompoundID" field: "TPSA TPSA ! TPSA" field: "ASRC AssaySourceName ! AssaySourceName" field: "EMAS ExactMass ! ExactMass" field: "MMAS MonoisotopicMass ! MonoisotopicMass" field: "ACON ActiveConcentration ! ActiveConcentration" field: "TCON TestedConcentration ! TestedConcentration" field: "PAID PharmActionID ! PharmActionID" field: "STID StructureID ! StructureID" field: "HUD HoldUntilDate ! HoldUntilDate" ] DB seqannot [ type: "text" format: "" comment: "SeqAnnot Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "ACCN Accession ! Accession number of sequence" field: "TITL Title ! Words in definition line" field: "PROP Properties ! Classification by source qualifiers and molecule type" field: "WORD Text_Word ! Free text associated with record" field: "ORGN Organism ! Scientific and common names of organism, and all higher levels of taxonomy" field: "AUTH Author ! Author(s) of publication" field: "PDAT Publication_Date ! Date sequence added to GenBank" field: "MDAT Modification_Date ! Date of last update" field: "ASSM Target_Assembly ! Target Assembly" field: "ANNT Annotation_Type ! Attribute" field: "VCTX Viewer_Context ! Viewer Context" ] DB snp [ type: "text" format: "chr,flt,rsr,brief,docset" comment: "Single Nucleotide Polymorphisms" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "RS Reference_SNP_ID ! Clustered SNP ID (rs)" field: "CHR Chromosome ! chromosomes" field: "GENE Gene_Name ! locus link symbol" field: "HAN Submitter_Handle ! Submitter Handle" field: "ACCN Accession ! nucleotide accessions" field: "LLID LocusLink_ID ! locus link UID" field: "ORGN Organism ! Organism" field: "FXN Function_Class ! Function class" field: "GTYP Genotype ! Genotype info" field: "NREF Not_reference_assembly ! SNP not mapped to reference assembly" field: "HETZ Heterozygosity ! Heterozygosity" field: "MPWT Map_Weight ! Map weight" field: "VALI Validation_Status ! Validation status" field: "SRAT Success_Rate ! Success rate" field: "CBID Create_Build_ID ! Original Build ID" field: "UBID Update_Build_ID ! Update Build ID" field: "PDAT Publication_Date ! SNP Publication date" field: "MDAT Modification_Date ! SNP modification date" field: "PCLS Population_Class ! Population classification based on geographic location" field: "MCLS Method_Class ! Assay Method" field: "SS Submitter_SNP_ID ! Submitter ID" field: "SID Local_SNP_ID ! Local SNP ID" field: "VARI Allele ! Allele" field: "SCLS SNP_Class ! SNP class" field: "GDSC Gene_Description ! description of gene" field: "CPOS Base_Position ! Chromosome base position" field: "GPOS Contig_Position ! Contig base position" field: "WORD Text_Word ! Free text associated with record" field: "WTAA Reference_Amino_Acid ! Reference Amino Acid" field: "MTAA Variant_Amino_Acid ! Variant or Mutant Amino Acid" field: "RSNP Reference_SNP ! Reference SNP" field: "SIDX SNP_Index ! SNP Index" field: "ALOR SNP_Allele_Origin ! Allele originated from somatic or germline" field: "SUSP Suspected_false_variation ! Variation suspected to be false based on evidence" field: "CLIN Clinical_Significance ! Variations with clinical effects or significances" field: "GMAF Global_Minor_Allele_Frequency ! Minor Allele Frequency derived from global population (ie. 1000G)" ] DB sra [ type: "text" format: "ftplist,asperalist" comment: "SRA Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "ACCN Accession ! Accession number of sequence" field: "TITL Title ! Words in definition line" field: "PROP Properties ! Classification by source qualifiers and molecule type" field: "WORD Text_Word ! Free text associated with record" field: "ORGN Organism ! Scientific and common names of organism, and all higher levels of taxonomy" field: "AUTH Author ! Author(s) of publication" field: "PDAT Publication_Date ! Date sequence added to GenBank" field: "MDAT Modification_Date ! Date of last update" ] DB taxonomy [ type: "" format: "" comment: "TAXONOMY records" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID Taxonomy_ID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "SCIN Scientific_Name ! Scientific name of organism" field: "COMN Common_Name ! Common name of organism" field: "TXSY Synonym ! Synonym of organism name" field: "ALLN All_Names ! All aliases for organism" field: "NXLV Next_Level ! Immediate parent in taxonomic hierarchy" field: "SBTR Subtree ! Any parent node in taxonomic hierarchy" field: "LNGE Lineage ! Lineage in taxonomic hierarchy" field: "GC GC ! Nuclear genetic code" field: "MGC MGC ! Mitochondrial genetic code" field: "TXDV Division ! GenBank division" field: "RANK Rank ! Hierarchical position (e.g., order, genus)" field: "EDAT Entrez_Date ! Date record first accessible through Entrez" field: "PROP Properties ! Property defined on particular node (e.g., terminal node)" field: "WORD Text_Word ! Free text associated with record" ] DB toolkit [ type: "" format: "" comment: "ToolKit database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "DID Dox_ID ! This is the doxygen id for this entity" field: "DEF Definition ! Definition" field: "DEFT Definition_Type ! Type of Definition" field: "SD Short_Description ! Short Description" field: "LD Long_Description ! Long Description" field: "FILE File_Name ! File Name" field: "MODS Modifiers ! Modifiers" field: "ATTR Attributes ! Attributes" field: "LINE Lines ! Lines" field: "LNK Link ! Link" field: "NAM Name ! Name of item (be it class, method, etc.)" field: "DEFB Defined_by ! The entity that defines this entity" ] DB toolkitall [ type: "" format: "" comment: "ToolKitAll database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "DID Dox_ID ! This is the doxygen id for this entity" field: "DEF Definition ! Definition" field: "DEFT Definition_Type ! Type of Definition" field: "SD Short_Description ! Short Description" field: "LD Long_Description ! Long Description" field: "FILE File_Name ! File Name" field: "MODS Modifiers ! Modifiers" field: "ATTR Attributes ! Attributes" field: "LINE Lines ! Lines" field: "LNK Link ! Link" field: "NAM Name ! Name of item (be it class, method, etc.)" field: "DEFB Defined_by ! The entity that defines this entity" ] DB unigene [ type: "" format: "" comment: "UniGene database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "ORGN Organism ! scientific and common names of organism" field: "TITL Title ! title of cluster" field: "LIBR Library ! dbEST library names" field: "TISS Tissue ! tissue sources of libraries" field: "CLON Clone_ID ! clone ids, with and without IMAGE" field: "NCAC Nucleotide_Accession ! nucleotide accessions of seqeunces" field: "NUID Nucleotide_UID ! nucleotide uids of sequences" field: "PRAC Protein_Accession ! protein accessions" field: "PUID Protein_UID ! protein uids" field: "PROP Properties ! various flags" field: "WORD Text_Word ! titles of sequences, vectors" field: "CHR Chromosome ! chromosomes" field: "GENE Gene_Name ! locus link symbol" field: "GDSC Gene_Description ! description of gene" field: "LLID Gene_ID ! gene id" field: "TXID Taxonomy_ID ! taxonomy id" field: "ESTC Est_Count ! number of ests per cluster" field: "MRNA mRNA_Count ! number of mrna per cluster" field: "SEQC Sequence_Count ! total number of sequences per cluster" field: "CID Cluster_ID ! Cluster ID" field: "EXPR Expression ! library description of all member sequences" field: "REXP Restricted_Expression ! library description of the majority of member sequences" field: "PRNK Page_Rank ! Page Rank" field: "RTYP Record_Type ! record type" ] DB unists [ type: "" format: "" comment: "Unique Sequence Tagged Sites database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "USID UniSTS_ID ! UniSTS ID" field: "MRKN Marker_Name ! marker name" field: "ORGN Organism ! scientific name of organism" field: "TXID Taxonomy_ID ! taxonomy id" field: "CHR Chromosome ! chromosomes" field: "MNAM Map_Name ! map name" field: "ALIA Alias ! UniSTS Alias" field: "KYWD Keyword ! various flags" field: "LLID Gene_ID ! Gene ID" field: "GENE Gene_Name ! locus link symbol" field: "GDSC Gene_Description ! description of gene" field: "UGID UniGene_ID ! unigenegene identifier" field: "UGDS UniGene_Description ! description of unigene" field: "NCAC Nucleotide_Accession ! nucleotide accessions" field: "NUID Nucleotide_UID ! nucleotide uids of sequences" field: "NUDL Nucleotide_Defline ! nucleotide defline" field: "PRIM Primer ! primer" field: "WORD Text_Word ! Free text associated with publication" ] DB gencoll [ type: "" format: "" comment: "GenColl Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "ACCN Accession ! Chromosome accessions" field: "ASAC Assembly_Accession ! Space delimited assembly accessions w/ & w/o versions" field: "CAT Category ! Assembly Set type or "assembly-unit"" field: "TXID Taxonomy_Id ! Taxonomy Id" field: "ORGN Organism ! Exploded organism names" field: "PROJ Project_Id ! Uid(s) of this Assembly's Projects" field: "NAME Assembly_Name ! Assembly Name" field: "ALLN All_Names ! All Names, space separated" field: "COV Coverage ! Sequencing Coverage" field: "CLAS Assembly_Class ! Type of the Assembly" field: "REL Release_Type ! Release Type" field: "PART Partial_Genome_Representation ! Partial Genome Representation" field: "RELS NCBI_Release_Date ! NCBI Release Date" field: "LEN Total_Sequence_Length ! Total length of chromosome/genome including bases and gaps." field: "REPL Chromosome_count ! Number of chromosomes in assembly" field: "PLAC Placed_Scaffolds_Count ! Number of placed scaffolds" field: "UNLO Unlocalized_Scaffolds_Count ! Number of unordered(unlocalized) scaffolds belonging to chromosomes" field: "UNPL Unplaced_Scaffolds_Count ! Number of unplaced scaffolds which do not belong to any chromosome, ie ChrUn" field: "PROP Properties ! Properties" ] DB gcassembly [ type: "" format: "" comment: "GCAssembly Database" field: "ALL All_Fields ! All terms from all searchable fields" field: "UID UID ! Unique number assigned to publication" field: "FILT Filter ! Limits the records" field: "ACCN Accession ! Chromosome accessions" field: "ASAC Assembly_accession ! Space delimited assembly accessions w/ & w/o versions" field: "STAS Assembly_Status ! How assembled is this assembly. 'contigs only' to 'complete sequence genome'" field: "TXID Taxonomy_ID ! Taxonomy ID" field: "ORGN Organism ! Exploded organism names" field: "PROJ Project_ID ! Uid(s) of this Assembly's Projects" field: "NAME Assembly_name ! Assembly name" field: "ALLN All_Names ! All Names, space separated" field: "COV Coverage ! Sequencing Coverage" field: "CLAS Assembly_Class ! Type of the Assembly" field: "REL Release_Type ! Release Type" field: "PART Partial_Genome_Representation ! Partial Genome Representation" field: "RELS NCBI_Release_Date ! NCBI Release Date" field: "UPDT Last_Update_Date ! Date of last edit" field: "SCDT Last_Seq_Change_Date ! Date of last change to the assembly's sequence" field: "LEN Total_Sequence_Length ! Total length of chromosome/genome including bases and gaps." field: "REPL Chromosome_count ! Number of chromosomes in assembly" field: "PLAC Placed_Scaffolds_Count ! Number of placed scaffolds" field: "UNLO Unlocalized_Scaffolds_Count ! Number of unordered(unlocalized) scaffolds belonging to chromosomes" field: "UNPL Unplaced_Scaffolds_Count ! Number of unplaced scaffolds which do not belong to any chromosome, ie ChrUn" field: "PROP Properties ! Properties" ]