MView

MView reformats the results of a sequence database search (BLAST, FASTA, etc) or a multiple alignment (CLUSTAL, MSF, MAF, etc) adding optional HTML markup to control colouring and web page layout. It can also be used as a filter to extract and convert searches or alignments to common formats.

                      1 [        .         .         .         .         :         .         .         ] 80
1 EGFR          100.0%  FKKIKVLGSGAFGTVYKGLWIPEGEK---------VKIPVAIKELREATSPK-ANKEILDEAYVMASVDNPHVCRLLGIC
2 DMDPR2         35.7%  ISVNKQLGTGEFGIVQQGVWSNGNE-----------RIQVAIKCLCRERMQS-NPMEFLKEAAIMHSIEHENIVRLYGVV
3 ITK_HUMAN      32.9%  LTFVQEIGSGQFGLVHLGYWLN--------------KDKVAIKTIREGAMS---EEDFIEEAEVMMKLSHPKLVQLYGVC
4 GCTK2ID        21.2%  IREVKQIGVGQFGAVVLAEMTGLS-XLPKGSMNADGVALVAVKKLKPDVSD-EVLQSFDKEIKFMSQLQHDSIVQLLAIC
5 CEC55C3        31.5%  VELTKKLGEGAFGEVWKGKLLKILDA-------NHQPVLVAVKTAKLESMTKEQIKEIMREARLMRNLDHINVVKFFGVA
  consensus/90%         .......G.G.FG.V........................VA.K.................E...M...............
  consensus/80%         ....K..G.G.FG.V..G.....................VA.K.................EA..M....H...V.L.G..

MView is implemented in Perl as a self-contained command line program that should run cross-platform.

Documentation

Main topics:

• Manual
• Input formats
• Output formats
• FAQ

The full documentation tree is here:

• Contents

Download

The latest version of the software can be downloaded from the SourceForge MView project as a UNIX/Linux gzipped or bzipped tar archive.

Found a bug?

Please send an email to biomview _at_ gmail.com. If MView isn’t able to parse your input file or produces a warning message, it would be very helpful if you can include/attach the data file in your email so that I can (1) quickly reproduce the error, and (2) add the example to the test suite.

Copyright and licence

MView and associated libraries are Open Source Software with copyright protected under the GNU General Public License, version 2.