# -*- perl -*- ########################################################################### # # Copyright (C) 1997-2015 Nigel P. Brown # # (i) License # # This program is free software; you can redistribute it and/or # modify it under the terms of the GNU General Public License # as published by the Free Software Foundation; either version 2 # of the License, or (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. # # (ii) Contacts # # Project Admin: Nigel P. Brown # Email: biomview@gmail.com # Project URL: http://bio-mview.sourceforge.net # # (iii) Citation # # Please acknowledge use of this Program by citing the following reference in # any published work including web-sites: # # Brown, N.P., Leroy C., Sander C. (1998) MView: A Web compatible database # search or multiple alignment viewer. Bioinformatics. 14(4):380-381. # # and provide a link to the MView project URL given above under 'Contacts'. # ########################################################################### # $Id: Slurp.pm,v 1.15 2005/12/12 20:42:48 brown Exp $ ########################################################################### # # Used to give Parse behaviour to any unformatted stream # ########################################################################### package NPB::Parse::Format::Slurp; use vars qw(@ISA); use strict; @ISA = qw(NPB::Parse::Record); #Consume one entry-worth of input on text stream associated with $file and #return a new Slurp instance. sub get_entry { my ($parent) = @_; my ($line, $offset, $bytes) = ('', -1, 0); while (defined ($line = $parent->{'text'}->getline)) { #start of entry if ($offset < 0) { $offset = $parent->{'text'}->startofline; next; } } return 0 if $offset < 0; $bytes = $parent->{'text'}->tell - $offset; new NPB::Parse::Format::Slurp(undef, $parent->{'text'}, $offset, $bytes); } #Parse one entry sub new { my $type = shift; if (@_ < 2) { #at least two args, ($offset, $bytes are optional). NPB::Message::die($type, "new() invalid arguments (@_)"); } my ($parent, $text, $offset, $bytes) = (@_, -1, -1); my ($self, $line, $record); $self = new NPB::Parse::Record($type, $parent, $text, $offset, $bytes); $self;#->examine; } ########################################################################### 1;