/*
Copyright (c) 1996,1997,1998,1999,2000,2001,2004,2006
Whitehead Institute for Biomedical Research, Steve Rozen
(http://jura.wi.mit.edu/rozen), and Helen Skaletsky
All rights reserved.

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:

   * Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
   * Redistributions in binary form must reproduce the above
copyright notice, this list of conditions and the following disclaimer
in the documentation and/or other materials provided with the
distribution.
   * Neither the names of the copyright holders nor contributors may
be used to endorse or promote products derived from this software
without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
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OWNERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
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OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*/

/* 

Test main for function long_seq_tm() in oligotm.c

Usage is e.g 

long_seq_tm_test AAAAGGGCCCCCCCCTTTTTTTTTTT 3 20

In this example 3 is the 0-based start of the
substring to use and 30 is the length of the
substring to use, so Tm is calculated on
GGGCCCCCCCCTTTTTTTTT (= 52.452902).

For testing compare to independent implementation
in ../test/long_seq_tm_test.pl.

*/

#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <math.h>

#include "oligotm.h"
  /* double long_seq_tm(const char* s, int start, int len, double salt_conc, double divalent_conc, double dntp_conc); */

int
main(argc, argv)
  int argc;
  const char**argv;
{
  const char *s;
  double salt_conc = 50;
  double divalent_conc = 0;
  double dntp_conc = 0;
  double tm;
  int start, len;
  char *endptr;

  s = argv[1]; 
  if (0 == s) {
    fprintf(stderr, "\n%s: incorrect arguments.\n", argv[0]);
    fprintf(stderr, "See file long_seq_tm_test_main.c for usage.\n\n");
    exit(-1);
  }
  start = strtol(argv[2], &endptr, 10); 
  len = strtol(argv[3], &endptr, 10);
  printf("s=%s, start=%d, length=%d\n", s, start, len);
  
  tm = long_seq_tm(s, start, len, salt_conc, divalent_conc, dntp_conc);
  printf("tm = %f\n", tm);
  return 0;
}