This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by vcftools configure 0.1.14, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --prefix=/tmp/install/vcftools-0.1.14 ## --------- ## ## Platform. ## ## --------- ## hostname = build-tools-1 uname -m = x86_64 uname -r = 4.4.0-157-generic uname -s = Linux uname -v = #185-Ubuntu SMP Tue Jul 23 09:17:01 UTC 2019 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /snap/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2455: checking for a BSD-compatible install configure:2523: result: /usr/bin/install -c configure:2534: checking whether build environment is sane configure:2589: result: yes configure:2740: checking for a thread-safe mkdir -p configure:2779: result: /bin/mkdir -p configure:2786: checking for gawk configure:2802: found /usr/bin/gawk configure:2813: result: gawk configure:2824: checking whether make sets $(MAKE) configure:2846: result: yes configure:2875: checking whether make supports nested variables configure:2892: result: yes configure:3077: checking for g++ configure:3093: found /usr/bin/g++ configure:3104: result: g++ configure:3131: checking for C++ compiler version configure:3140: g++ --version >&5 g++ (Ubuntu 5.4.0-6ubuntu1~16.04.11) 5.4.0 20160609 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3151: $? = 0 configure:3140: g++ -v >&5 Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.11' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.11) configure:3151: $? = 0 configure:3140: g++ -V >&5 g++: error: unrecognized command line option '-V' g++: fatal error: no input files compilation terminated. configure:3151: $? = 1 configure:3140: g++ -qversion >&5 g++: error: unrecognized command line option '-qversion' g++: fatal error: no input files compilation terminated. configure:3151: $? = 1 configure:3171: checking whether the C++ compiler works configure:3193: g++ conftest.cpp >&5 configure:3197: $? = 0 configure:3245: result: yes configure:3248: checking for C++ compiler default output file name configure:3250: result: a.out configure:3256: checking for suffix of executables configure:3263: g++ -o conftest conftest.cpp >&5 configure:3267: $? = 0 configure:3289: result: configure:3311: checking whether we are cross compiling configure:3319: g++ -o conftest conftest.cpp >&5 configure:3323: $? = 0 configure:3330: ./conftest configure:3334: $? = 0 configure:3349: result: no configure:3354: checking for suffix of object files configure:3376: g++ -c conftest.cpp >&5 configure:3380: $? = 0 configure:3401: result: o configure:3405: checking whether we are using the GNU C++ compiler configure:3424: g++ -c conftest.cpp >&5 configure:3424: $? = 0 configure:3433: result: yes configure:3442: checking whether g++ accepts -g configure:3462: g++ -c -g conftest.cpp >&5 configure:3462: $? = 0 configure:3503: result: yes configure:3537: checking for style of include used by make configure:3565: result: GNU configure:3591: checking dependency style of g++ configure:3702: result: gcc3 configure:3765: checking for gcc configure:3781: found /usr/bin/gcc configure:3792: result: gcc configure:4021: checking for C compiler version configure:4030: gcc --version >&5 gcc (Ubuntu 5.4.0-6ubuntu1~16.04.11) 5.4.0 20160609 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4041: $? = 0 configure:4030: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.11' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.11) configure:4041: $? = 0 configure:4030: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:4041: $? = 1 configure:4030: gcc -qversion >&5 gcc: error: unrecognized command line option '-qversion' gcc: fatal error: no input files compilation terminated. configure:4041: $? = 1 configure:4045: checking whether we are using the GNU C compiler configure:4064: gcc -c conftest.c >&5 configure:4064: $? = 0 configure:4073: result: yes configure:4082: checking whether gcc accepts -g configure:4102: gcc -c -g conftest.c >&5 configure:4102: $? = 0 configure:4143: result: yes configure:4160: checking for gcc option to accept ISO C89 configure:4223: gcc -c -g -O2 conftest.c >&5 configure:4223: $? = 0 configure:4236: result: none needed configure:4261: checking whether gcc understands -c and -o together configure:4283: gcc -c conftest.c -o conftest2.o configure:4286: $? = 0 configure:4283: gcc -c conftest.c -o conftest2.o configure:4286: $? = 0 configure:4298: result: yes configure:4317: checking dependency style of gcc configure:4428: result: gcc3 configure:4448: checking how to run the C preprocessor configure:4479: gcc -E conftest.c configure:4479: $? = 0 configure:4493: gcc -E conftest.c conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:4493: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "vcftools" | #define PACKAGE_TARNAME "vcftools" | #define PACKAGE_VERSION "0.1.14" | #define PACKAGE_STRING "vcftools 0.1.14" | #define PACKAGE_BUGREPORT "https://github.com/vcftools/vcftools/issues" | #define PACKAGE_URL "" | #define PACKAGE "vcftools" | #define VERSION "0.1.14" | /* end confdefs.h. */ | #include configure:4518: result: gcc -E configure:4538: gcc -E conftest.c configure:4538: $? = 0 configure:4552: gcc -E conftest.c conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:4552: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "vcftools" | #define PACKAGE_TARNAME "vcftools" | #define PACKAGE_VERSION "0.1.14" | #define PACKAGE_STRING "vcftools 0.1.14" | #define PACKAGE_BUGREPORT "https://github.com/vcftools/vcftools/issues" | #define PACKAGE_URL "" | #define PACKAGE "vcftools" | #define VERSION "0.1.14" | /* end confdefs.h. */ | #include configure:4586: checking for perl configure:4604: found /usr/bin/perl configure:4616: result: /usr/bin/perl configure:4704: checking for pkg-config configure:4722: found /usr/bin/pkg-config configure:4734: result: /usr/bin/pkg-config configure:4759: checking pkg-config is at least version 0.9.0 configure:4762: result: yes configure:4772: checking for ZLIB configure:4779: $PKG_CONFIG --exists --print-errors "zlib" configure:4782: $? = 0 configure:4796: $PKG_CONFIG --exists --print-errors "zlib" configure:4799: $? = 0 configure:4857: result: yes configure:4865: checking for grep that handles long lines and -e configure:4923: result: /bin/grep configure:4928: checking for egrep configure:4990: result: /bin/grep -E configure:4995: checking for ANSI C header files configure:5015: gcc -c -g -O2 conftest.c >&5 configure:5015: $? = 0 configure:5088: gcc -o conftest -g -O2 conftest.c >&5 configure:5088: $? = 0 configure:5088: ./conftest configure:5088: $? = 0 configure:5099: result: yes configure:5112: checking for sys/types.h configure:5112: gcc -c -g -O2 conftest.c >&5 configure:5112: $? = 0 configure:5112: result: yes configure:5112: checking for sys/stat.h configure:5112: gcc -c -g -O2 conftest.c >&5 configure:5112: $? = 0 configure:5112: result: yes configure:5112: checking for stdlib.h configure:5112: gcc -c -g -O2 conftest.c >&5 configure:5112: $? = 0 configure:5112: result: yes configure:5112: checking for string.h configure:5112: gcc -c -g -O2 conftest.c >&5 configure:5112: $? = 0 configure:5112: result: yes configure:5112: checking for memory.h configure:5112: gcc -c -g -O2 conftest.c >&5 configure:5112: $? = 0 configure:5112: result: yes configure:5112: checking for strings.h configure:5112: gcc -c -g -O2 conftest.c >&5 configure:5112: $? = 0 configure:5112: result: yes configure:5112: checking for inttypes.h configure:5112: gcc -c -g -O2 conftest.c >&5 configure:5112: $? = 0 configure:5112: result: yes configure:5112: checking for stdint.h configure:5112: gcc -c -g -O2 conftest.c >&5 configure:5112: $? = 0 configure:5112: result: yes configure:5112: checking for unistd.h configure:5112: gcc -c -g -O2 conftest.c >&5 configure:5112: $? = 0 configure:5112: result: yes configure:5127: checking arpa/inet.h usability configure:5127: gcc -c -g -O2 conftest.c >&5 configure:5127: $? = 0 configure:5127: result: yes configure:5127: checking arpa/inet.h presence configure:5127: gcc -E conftest.c configure:5127: $? = 0 configure:5127: result: yes configure:5127: checking for arpa/inet.h configure:5127: result: yes configure:5127: checking fcntl.h usability configure:5127: gcc -c -g -O2 conftest.c >&5 configure:5127: $? = 0 configure:5127: result: yes configure:5127: checking fcntl.h presence configure:5127: gcc -E conftest.c configure:5127: $? = 0 configure:5127: result: yes configure:5127: checking for fcntl.h configure:5127: result: yes configure:5127: checking limits.h usability configure:5127: gcc -c -g -O2 conftest.c >&5 configure:5127: $? = 0 configure:5127: result: yes configure:5127: checking limits.h presence configure:5127: gcc -E conftest.c configure:5127: $? = 0 configure:5127: result: yes configure:5127: checking for limits.h configure:5127: result: yes configure:5127: checking netdb.h usability configure:5127: gcc -c -g -O2 conftest.c >&5 configure:5127: $? = 0 configure:5127: result: yes configure:5127: checking netdb.h presence configure:5127: gcc -E conftest.c configure:5127: $? = 0 configure:5127: result: yes configure:5127: checking for netdb.h configure:5127: result: yes configure:5127: checking for stdint.h configure:5127: result: yes configure:5127: checking for stdlib.h configure:5127: result: yes configure:5127: checking for string.h configure:5127: result: yes configure:5127: checking sys/socket.h usability configure:5127: gcc -c -g -O2 conftest.c >&5 configure:5127: $? = 0 configure:5127: result: yes configure:5127: checking sys/socket.h presence configure:5127: gcc -E conftest.c configure:5127: $? = 0 configure:5127: result: yes configure:5127: checking for sys/socket.h configure:5127: result: yes configure:5127: checking for unistd.h configure:5127: result: yes configure:5139: checking for stdbool.h that conforms to C99 configure:5206: gcc -c -g -O2 conftest.c >&5 configure:5206: $? = 0 configure:5213: result: yes configure:5215: checking for _Bool configure:5215: gcc -c -g -O2 conftest.c >&5 configure:5215: $? = 0 configure:5215: gcc -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:66:20: error: expected expression before ')' token if (sizeof ((_Bool))) ^ configure:5215: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "vcftools" | #define PACKAGE_TARNAME "vcftools" | #define PACKAGE_VERSION "0.1.14" | #define PACKAGE_STRING "vcftools 0.1.14" | #define PACKAGE_BUGREPORT "https://github.com/vcftools/vcftools/issues" | #define PACKAGE_URL "" | #define PACKAGE "vcftools" | #define VERSION "0.1.14" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((_Bool))) | return 0; | ; | return 0; | } configure:5215: result: yes configure:5232: checking for inline configure:5248: gcc -c -g -O2 conftest.c >&5 configure:5248: $? = 0 configure:5256: result: inline configure:5274: checking for int16_t configure:5274: gcc -c -g -O2 conftest.c >&5 configure:5274: $? = 0 configure:5274: gcc -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:69:12: error: size of array 'test_array' is negative static int test_array [1 - 2 * !((int16_t) (((((int16_t) 1 << N) << N) - 1) * 2 + 1) ^ configure:5274: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "vcftools" | #define PACKAGE_TARNAME "vcftools" | #define PACKAGE_VERSION "0.1.14" | #define PACKAGE_STRING "vcftools 0.1.14" | #define PACKAGE_BUGREPORT "https://github.com/vcftools/vcftools/issues" | #define PACKAGE_URL "" | #define PACKAGE "vcftools" | #define VERSION "0.1.14" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | enum { N = 16 / 2 - 1 }; | int | main () | { | static int test_array [1 - 2 * !((int16_t) (((((int16_t) 1 << N) << N) - 1) * 2 + 1) | < (int16_t) (((((int16_t) 1 << N) << N) - 1) * 2 + 2))]; | test_array [0] = 0; | return test_array [0]; | | ; | return 0; | } configure:5274: result: yes configure:5285: checking for int32_t configure:5285: gcc -c -g -O2 conftest.c >&5 configure:5285: $? = 0 configure:5285: gcc -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:70:53: warning: integer overflow in expression [-Woverflow] < (int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 2))]; ^ conftest.c:69:12: error: storage size of 'test_array' isn't constant static int test_array [1 - 2 * !((int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 1) ^ configure:5285: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "vcftools" | #define PACKAGE_TARNAME "vcftools" | #define PACKAGE_VERSION "0.1.14" | #define PACKAGE_STRING "vcftools 0.1.14" | #define PACKAGE_BUGREPORT "https://github.com/vcftools/vcftools/issues" | #define PACKAGE_URL "" | #define PACKAGE "vcftools" | #define VERSION "0.1.14" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | enum { N = 32 / 2 - 1 }; | int | main () | { | static int test_array [1 - 2 * !((int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 1) | < (int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 2))]; | test_array [0] = 0; | return test_array [0]; | | ; | return 0; | } configure:5285: result: yes configure:5296: checking for int64_t configure:5296: gcc -c -g -O2 conftest.c >&5 configure:5296: $? = 0 configure:5296: gcc -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:70:53: warning: integer overflow in expression [-Woverflow] < (int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 2))]; ^ conftest.c:69:12: error: storage size of 'test_array' isn't constant static int test_array [1 - 2 * !((int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 1) ^ configure:5296: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "vcftools" | #define PACKAGE_TARNAME "vcftools" | #define PACKAGE_VERSION "0.1.14" | #define PACKAGE_STRING "vcftools 0.1.14" | #define PACKAGE_BUGREPORT "https://github.com/vcftools/vcftools/issues" | #define PACKAGE_URL "" | #define PACKAGE "vcftools" | #define VERSION "0.1.14" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | enum { N = 64 / 2 - 1 }; | int | main () | { | static int test_array [1 - 2 * !((int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 1) | < (int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 2))]; | test_array [0] = 0; | return test_array [0]; | | ; | return 0; | } configure:5296: result: yes configure:5307: checking for int8_t configure:5307: gcc -c -g -O2 conftest.c >&5 configure:5307: $? = 0 configure:5307: gcc -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:69:12: error: size of array 'test_array' is negative static int test_array [1 - 2 * !((int8_t) (((((int8_t) 1 << N) << N) - 1) * 2 + 1) ^ configure:5307: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "vcftools" | #define PACKAGE_TARNAME "vcftools" | #define PACKAGE_VERSION "0.1.14" | #define PACKAGE_STRING "vcftools 0.1.14" | #define PACKAGE_BUGREPORT "https://github.com/vcftools/vcftools/issues" | #define PACKAGE_URL "" | #define PACKAGE "vcftools" | #define VERSION "0.1.14" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | enum { N = 8 / 2 - 1 }; | int | main () | { | static int test_array [1 - 2 * !((int8_t) (((((int8_t) 1 << N) << N) - 1) * 2 + 1) | < (int8_t) (((((int8_t) 1 << N) << N) - 1) * 2 + 2))]; | test_array [0] = 0; | return test_array [0]; | | ; | return 0; | } configure:5307: result: yes configure:5318: checking for off_t configure:5318: gcc -c -g -O2 conftest.c >&5 configure:5318: $? = 0 configure:5318: gcc -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:68:20: error: expected expression before ')' token if (sizeof ((off_t))) ^ configure:5318: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "vcftools" | #define PACKAGE_TARNAME "vcftools" | #define PACKAGE_VERSION "0.1.14" | #define PACKAGE_STRING "vcftools 0.1.14" | #define PACKAGE_BUGREPORT "https://github.com/vcftools/vcftools/issues" | #define PACKAGE_URL "" | #define PACKAGE "vcftools" | #define VERSION "0.1.14" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((off_t))) | return 0; | ; | return 0; | } configure:5318: result: yes configure:5329: checking for size_t configure:5329: gcc -c -g -O2 conftest.c >&5 configure:5329: $? = 0 configure:5329: gcc -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:68:21: error: expected expression before ')' token if (sizeof ((size_t))) ^ configure:5329: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "vcftools" | #define PACKAGE_TARNAME "vcftools" | #define PACKAGE_VERSION "0.1.14" | #define PACKAGE_STRING "vcftools 0.1.14" | #define PACKAGE_BUGREPORT "https://github.com/vcftools/vcftools/issues" | #define PACKAGE_URL "" | #define PACKAGE "vcftools" | #define VERSION "0.1.14" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:5329: result: yes configure:5340: checking for ssize_t configure:5340: gcc -c -g -O2 conftest.c >&5 configure:5340: $? = 0 configure:5340: gcc -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:68:22: error: expected expression before ')' token if (sizeof ((ssize_t))) ^ configure:5340: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "vcftools" | #define PACKAGE_TARNAME "vcftools" | #define PACKAGE_VERSION "0.1.14" | #define PACKAGE_STRING "vcftools 0.1.14" | #define PACKAGE_BUGREPORT "https://github.com/vcftools/vcftools/issues" | #define PACKAGE_URL "" | #define PACKAGE "vcftools" | #define VERSION "0.1.14" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((ssize_t))) | return 0; | ; | return 0; | } configure:5340: result: yes configure:5351: checking for uint16_t configure:5351: gcc -c -g -O2 conftest.c >&5 configure:5351: $? = 0 configure:5351: result: yes configure:5363: checking for uint32_t configure:5363: gcc -c -g -O2 conftest.c >&5 configure:5363: $? = 0 configure:5363: result: yes configure:5377: checking for uint8_t configure:5377: gcc -c -g -O2 conftest.c >&5 configure:5377: $? = 0 configure:5377: result: yes configure:5400: checking for special C compiler options needed for large files configure:5445: result: no configure:5451: checking for _FILE_OFFSET_BITS value needed for large files configure:5476: gcc -c -g -O2 conftest.c >&5 configure:5476: $? = 0 configure:5508: result: no configure:5595: checking for error_at_line configure:5611: gcc -o conftest -g -O2 conftest.c >&5 configure:5611: $? = 0 configure:5619: result: yes configure:5632: checking for stdlib.h configure:5632: result: yes configure:5642: checking for GNU libc compatible malloc configure:5666: gcc -o conftest -g -O2 conftest.c >&5 configure:5666: $? = 0 configure:5666: ./conftest configure:5666: $? = 0 configure:5676: result: yes configure:5699: checking for stdlib.h configure:5699: result: yes configure:5709: checking for GNU libc compatible realloc configure:5733: gcc -o conftest -g -O2 conftest.c >&5 configure:5733: $? = 0 configure:5733: ./conftest configure:5733: $? = 0 configure:5743: result: yes configure:5767: checking for gethostbyaddr configure:5767: gcc -o conftest -g -O2 conftest.c >&5 configure:5767: $? = 0 configure:5767: result: yes configure:5767: checking for gethostbyname configure:5767: gcc -o conftest -g -O2 conftest.c >&5 configure:5767: $? = 0 configure:5767: result: yes configure:5767: checking for memset configure:5767: gcc -o conftest -g -O2 conftest.c >&5 conftest.c:61:6: warning: conflicting types for built-in function 'memset' char memset (); ^ configure:5767: $? = 0 configure:5767: result: yes configure:5767: checking for pow configure:5767: gcc -o conftest -g -O2 conftest.c >&5 conftest.c:62:6: warning: conflicting types for built-in function 'pow' char pow (); ^ /tmp/ccTZt7pF.o: In function `main': /tmp/install/vcftools-0.1.14/conftest.c:73: undefined reference to `pow' collect2: error: ld returned 1 exit status configure:5767: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "vcftools" | #define PACKAGE_TARNAME "vcftools" | #define PACKAGE_VERSION "0.1.14" | #define PACKAGE_STRING "vcftools 0.1.14" | #define PACKAGE_BUGREPORT "https://github.com/vcftools/vcftools/issues" | #define PACKAGE_URL "" | #define PACKAGE "vcftools" | #define VERSION "0.1.14" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_GETHOSTBYADDR 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | /* end confdefs.h. */ | /* Define pow to an innocuous variant, in case declares pow. | For example, HP-UX 11i declares gettimeofday. */ | #define pow innocuous_pow | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char pow (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef pow | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pow (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_pow || defined __stub___pow | choke me | #endif | | int | main () | { | return pow (); | ; | return 0; | } configure:5767: result: no configure:5767: checking for select configure:5767: gcc -o conftest -g -O2 conftest.c >&5 configure:5767: $? = 0 configure:5767: result: yes configure:5767: checking for socket configure:5767: gcc -o conftest -g -O2 conftest.c >&5 configure:5767: $? = 0 configure:5767: result: yes configure:5767: checking for sqrt configure:5767: gcc -o conftest -g -O2 conftest.c >&5 conftest.c:64:6: warning: conflicting types for built-in function 'sqrt' char sqrt (); ^ /tmp/ccmBIvcK.o: In function `main': /tmp/install/vcftools-0.1.14/conftest.c:75: undefined reference to `sqrt' collect2: error: ld returned 1 exit status configure:5767: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "vcftools" | #define PACKAGE_TARNAME "vcftools" | #define PACKAGE_VERSION "0.1.14" | #define PACKAGE_STRING "vcftools 0.1.14" | #define PACKAGE_BUGREPORT "https://github.com/vcftools/vcftools/issues" | #define PACKAGE_URL "" | #define PACKAGE "vcftools" | #define VERSION "0.1.14" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_GETHOSTBYADDR 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | /* end confdefs.h. */ | /* Define sqrt to an innocuous variant, in case declares sqrt. | For example, HP-UX 11i declares gettimeofday. */ | #define sqrt innocuous_sqrt | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char sqrt (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef sqrt | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char sqrt (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_sqrt || defined __stub___sqrt | choke me | #endif | | int | main () | { | return sqrt (); | ; | return 0; | } configure:5767: result: no configure:5767: checking for strchr configure:5767: gcc -o conftest -g -O2 conftest.c >&5 conftest.c:64:6: warning: conflicting types for built-in function 'strchr' char strchr (); ^ configure:5767: $? = 0 configure:5767: result: yes configure:5767: checking for strdup configure:5767: gcc -o conftest -g -O2 conftest.c >&5 conftest.c:65:6: warning: conflicting types for built-in function 'strdup' char strdup (); ^ configure:5767: $? = 0 configure:5767: result: yes configure:5767: checking for strerror configure:5767: gcc -o conftest -g -O2 conftest.c >&5 configure:5767: $? = 0 configure:5767: result: yes configure:5767: checking for strstr configure:5767: gcc -o conftest -g -O2 conftest.c >&5 conftest.c:67:6: warning: conflicting types for built-in function 'strstr' char strstr (); ^ configure:5767: $? = 0 configure:5767: result: yes configure:5767: checking for strtol configure:5767: gcc -o conftest -g -O2 conftest.c >&5 configure:5767: $? = 0 configure:5767: result: yes configure:5946: checking that generated files are newer than configure configure:5952: result: done configure:5979: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by vcftools config.status 0.1.14, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on build-tools-1 config.status:893: creating Makefile config.status:893: creating src/Makefile config.status:893: creating src/cpp/Makefile config.status:893: creating src/perl/Makefile config.status:893: creating config.h config.status:1122: executing depfiles commands ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_c_compiler_gnu=yes ac_cv_c_inline=inline ac_cv_c_int16_t=yes ac_cv_c_int32_t=yes ac_cv_c_int64_t=yes ac_cv_c_int8_t=yes ac_cv_c_uint16_t=yes ac_cv_c_uint32_t=yes ac_cv_c_uint8_t=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_PKG_CONFIG_LIBDIR_set= ac_cv_env_PKG_CONFIG_LIBDIR_value= ac_cv_env_PKG_CONFIG_PATH_set= ac_cv_env_PKG_CONFIG_PATH_value= ac_cv_env_PKG_CONFIG_set= ac_cv_env_PKG_CONFIG_value= ac_cv_env_ZLIB_CFLAGS_set= ac_cv_env_ZLIB_CFLAGS_value= ac_cv_env_ZLIB_LIBS_set= ac_cv_env_ZLIB_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_gethostbyaddr=yes ac_cv_func_gethostbyname=yes ac_cv_func_malloc_0_nonnull=yes ac_cv_func_memset=yes ac_cv_func_pow=no ac_cv_func_realloc_0_nonnull=yes ac_cv_func_select=yes ac_cv_func_socket=yes ac_cv_func_sqrt=no ac_cv_func_strchr=yes ac_cv_func_strdup=yes ac_cv_func_strerror=yes ac_cv_func_strstr=yes ac_cv_func_strtol=yes ac_cv_header_arpa_inet_h=yes ac_cv_header_fcntl_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_limits_h=yes ac_cv_header_memory_h=yes ac_cv_header_netdb_h=yes ac_cv_header_stdbool_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_socket_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_lib_error_at_line=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GREP=/bin/grep ac_cv_path_PERL=/usr/bin/perl ac_cv_path_ac_pt_PKG_CONFIG=/usr/bin/pkg-config ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no ac_cv_type__Bool=yes ac_cv_type_off_t=yes ac_cv_type_size_t=yes ac_cv_type_ssize_t=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes pkg_cv_ZLIB_CFLAGS= pkg_cv_ZLIB_LIBS=-lz ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /tmp/install/vcftools-0.1.14/missing aclocal-1.14' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AUTOCONF='${SHELL} /tmp/install/vcftools-0.1.14/missing autoconf' AUTOHEADER='${SHELL} /tmp/install/vcftools-0.1.14/missing autoheader' AUTOMAKE='${SHELL} /tmp/install/vcftools-0.1.14/missing automake-1.14' AWK='gawk' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2' CPP='gcc -E' CPPFLAGS='' CXX='g++' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' GREP='/bin/grep' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LDFLAGS='' LIBOBJS='' LIBS='' LTLIBOBJS='' MAKEINFO='${SHELL} /tmp/install/vcftools-0.1.14/missing makeinfo' MKDIR_P='/bin/mkdir -p' OBJEXT='o' PACKAGE='vcftools' PACKAGE_BUGREPORT='https://github.com/vcftools/vcftools/issues' PACKAGE_NAME='vcftools' PACKAGE_STRING='vcftools 0.1.14' PACKAGE_TARNAME='vcftools' PACKAGE_URL='' PACKAGE_VERSION='0.1.14' PATH_SEPARATOR=':' PERL='/usr/bin/perl' PKG_CONFIG='/usr/bin/pkg-config' PKG_CONFIG_LIBDIR='' PKG_CONFIG_PATH='' PMDIR='${prefix}/share/perl/5.22.1' SET_MAKE='' SHELL='/bin/bash' STRIP='' VERSION='0.1.14' ZLIB_CFLAGS='' ZLIB_LIBS='-lz' ac_ct_CC='gcc' ac_ct_CXX='g++' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build_alias='' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host_alias='' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /tmp/install/vcftools-0.1.14/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/tmp/install/vcftools-0.1.14' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "vcftools" #define PACKAGE_TARNAME "vcftools" #define PACKAGE_VERSION "0.1.14" #define PACKAGE_STRING "vcftools 0.1.14" #define PACKAGE_BUGREPORT "https://github.com/vcftools/vcftools/issues" #define PACKAGE_URL "" #define PACKAGE "vcftools" #define VERSION "0.1.14" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_ARPA_INET_H 1 #define HAVE_FCNTL_H 1 #define HAVE_LIMITS_H 1 #define HAVE_NETDB_H 1 #define HAVE_STDINT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_SYS_SOCKET_H 1 #define HAVE_UNISTD_H 1 #define HAVE__BOOL 1 #define HAVE_STDBOOL_H 1 #define HAVE_STDLIB_H 1 #define HAVE_MALLOC 1 #define HAVE_STDLIB_H 1 #define HAVE_REALLOC 1 #define HAVE_GETHOSTBYADDR 1 #define HAVE_GETHOSTBYNAME 1 #define HAVE_MEMSET 1 #define HAVE_SELECT 1 #define HAVE_SOCKET 1 #define HAVE_STRCHR 1 #define HAVE_STRDUP 1 #define HAVE_STRERROR 1 #define HAVE_STRSTR 1 #define HAVE_STRTOL 1 configure: exit 0