#! /bin/sh
# This is the LHEA perl script: /cvmfs/extras-fp7.egi.eu/extras/heasoft/ftools/x86_64-unknown-linux-gnu-libc2.19-0/bin/acisxspec
# The purpose of this special block is to make this script work with
# the user's local perl, regardless of where that perl is installed.
# The variable LHEAPERL is set by the initialization script to
# point to the local perl installation.
#-------------------------------------------------------------------------------
eval '
if [ "x$LHEAPERL" = x ]; then
  echo "Please run standard LHEA initialization before attempting to run /cvmfs/extras-fp7.egi.eu/extras/heasoft/ftools/x86_64-unknown-linux-gnu-libc2.19-0/bin/acisxspec."
  exit 3
elif [ "$LHEAPERL" = noperl ]; then
  echo "During LHEA initialization, no acceptable version of Perl was found."
  echo "Cannot execute script /cvmfs/extras-fp7.egi.eu/extras/heasoft/ftools/x86_64-unknown-linux-gnu-libc2.19-0/bin/acisxspec."
  exit 3
elif [ `$LHEAPERL -v < /dev/null 2> /dev/null | grep -ic "perl"` -eq 0 ]; then
  echo "LHEAPERL variable does not point to a usable perl."
  exit 3
else
  # Force Perl into 32-bit mode (to match the binaries) if necessary:
  if [ "x$HD_BUILD_ARCH_32_BIT" = xyes ]; then
    if [ `$LHEAPERL -V 2> /dev/null | grep -ic "USE_64_BIT"` -ne 0 ]; then
      VERSIONER_PERL_PREFER_32_BIT=yes
      export VERSIONER_PERL_PREFER_32_BIT
    fi
  fi
  exec $LHEAPERL -x $0 ${1+"$@"}
fi
'
if(0);
# Do not delete anything above this comment from an installed LHEA script!
#-------------------------------------------------------------------------------
#!/usr1/local/bin/perl
use Getopt::Std;
use Astro::FITS::CFITSIO qw( :shortnames :constants );
use HEACORE::HEAINIT;
use HEACORE::HEAUTILS;
use HEACORE::PIL;



getopt();
if (defined $opt_h) { print<<EOHELP;
acisxspec 

EOHELP
exit 0;
}
 $infile =0;
 $ra =0;
 $dec =0;
 $radius =0;
 $bin =0;
 $tbin =0;
 $tmpimgfile =0;
 $srcregfile =0;
 $backregfile =0;
 $timerngfile =0;
 $xcol=0;
 $ycol=0;
 $eventsfile=0;
 $srcphafile =0;
 $backphafile =0;
 $srcarffile =0;
 $srcrmffile =0;
 $device =0;
 $timeout=0;
 $lcrvfile ="lcrv.fits";
 $fptr =0;
 

exit headas_main(\&acisxspec);

sub acisxspec {
 my $tname ="acisxspec";
 my $tvers ="1.0";

 &acisxspec_getpar();

 $status = &acisxspec_work();

}


sub acisxspec_work {
  my $return_value;

  $| =1;




  $eventsfile = $infile;
  $gtifile =$eventsfile;
  $status=0;
  print "Create light curve for  '$infile' \n";
if ( $eventsfile =~ /\[\w+\]/i ) {
  $gtifile =~ s/\[\w+\]//i;
  if (ffopen($fptr,$infile,READONLY,$status)) {
          print "open $infile error\n";
          exit $status;
  } 
} else {
  if (ffopen($fptr,$infile,READONLY,$status)) {
          print "open $infile error\n";
          exit $status;
  } else {
     if ( ffthdu($fptr,$hdunum,$status)) {
          print "get hdunum error\n";
          exit $status;
     }
     $found = 0;
     for ($i=2; $i <=$hdunum && !$found; $i++ ) {
         if(ffmahd($fptr,$i,$hdutype,$status)) {
             print "move to extension $i error\n";
             exit $status;
         }
         if ( ffgkey($fptr,"EXTNAME",$extname,$comment,$status)) {
             print "read keyword EXTNAME of the  extension $i error\n";
             exit $status;
         }
         if ( $extname =~ /event/i || $extname =~ /stdevt/i ) {
             $found =$i;
             break;
         } elsif ( ffgkey($fptr,"HDUCLAS1",$hduclas1,$comment,$status)) {
             $status =0;
         } elsif ( $hduclas1 =~ /event/i) {
             $found =$i;
             break;
         }
     }
     if ( !$found ) {
         print "Could not find events extension please specify it.\n";
         exit(1);
     }
     $extname =~ s/\ //g;
     $extname =~ s/'//g;

     $eventsfile = sprintf("%s[%s]",$infile,$extname);
  } 
}


  if ( ffgnrw($fptr,$numrows,$status)) {
          print "read rownum error\n";
          exit $status;
  }

  if ( $tbin =~/def/i) {
       $tbin = int($numrows/1000);
       if ( $tbin == 0) {
            $tbin =1;
       } 
  }


 system("rm -rf tmpgti");
 system("ftcopy $gtifile\[gti\] tmpgti copyall=no");

  system("fcurve infile=$eventsfile gtifile=tmpgti outfile=\"!$lcrvfile\" timecol=TIME columns=$xcol binsz=$tbin lowval=INDEF highval=INDEF binmode=Event_rate");

 system("rm -rf tmpgti");
 
  $infile = sprintf "%s[1]",$lcrvfile;
  if ( -e $timerngfile ) {
      system("rm -f $timerngfile");
      system("touch $timerngfile");
  }
  # system("selectxrange '$infile' '$timerngfile' TIME $xcol y $timeout Time Events/s"); 
  system("selectxrange infile='$infile' rangefile='$timerngfile' x=TIME y=$xcol sort=y timeout=$timeout xname=Time yname=Events/s");
  print "Selectxrange done \n";

  $infile = sprintf "%s[bin $xcol=%d, $ycol=%d]",$eventsfile,$bin,$bin;
  print "Bin '$infile' \n";
  $return_value =`fcopy '$infile' '$tmpimgfile'`;

  if ( $return_value ) {
      exit $return_value;
  }
  

  if ( $tmpimgfile =~/^!/ ) {
      $tmpimgfile1 =substr($tmpimgfile,1);
  } else {
      $tmpimgfile1 =$tmpimgfile;
  }

  if ( !(-e $tmpimgfile1) ) {
       exit 1;
  }



  print "Select the source and background regions......\n";

  if ( -e $srcregfile ) {
     system ("rm -rf $srcregfile");
  }
  if ( -e $srcphafile ) {
     system ("rm -rf $srcphafile");
  }
  if ( -e $backregfile ) {
       system("rm -f $backregfile");
  }
  if ( -e $backphafile ) {
       system("rm -f $backphafile");
  }
  

  $return_value= `make2region '$tmpimgfile1' '$srcregfile'  '$backregfile' ra=$ra dec=$dec radius=$radius timeout=$timeout`;



      $xpa_user =$ENV{XPA_USER};
      $helpdir =$ENV{LHEA_HELP};
      

      if ( !(defined $xpa_user) || $xpa_user eq "") {
          $pow = "pow";
          $heraXPA = "heraXPA";
      } else {
          $pow ="pow_$xpa_user";
          $heraXPA = "heraXPA_$xpa_user";
      }
      $result = `xpaget xpans 2>/dev/null`;
      if ($result !~ /heraXPA/) {
          $heraXPA = $pow;
      }


  if ( !(-e $srcregfile) ) {
      print "Error:source region file has not been saved!\n";
      exit 1;
  }


  print "Select region done\n";
  
  @list =  split(/\//,$eventsfile);

  $eventsfile = $list[$#list];
  
#  print "filter region $srcregfile \n";
#  system("cat $srcregfile");
#  print "filter region $backregfile \n";
#  system("cat $backregfile");


  $srcarffile= $srcphafile;
  $srcrmffile= $srcphafile;
  $srcarffile =~ s/.\w+$/.arf/;
  $srcrmffile =~ s/.\w+$/.rmf/;
  system("rm -f $srcarffile");
  system("rm -f $srcrmffile");
  open FD,">comfile.xco";
  print FD "\n";
  print FD "set datadir ./\n";
#  print FD "read events $eventsfile reset_miss=yes\n";
  print FD "read events $eventsfile \n\n";
  if ( -e $timerngfile ) {
    print FD "filter time file \"$timerngfile\" \n"
  }
  print FD "filter region $srcregfile \n";
  print FD "extract spectrum \n";
#  print FD "save spectrum $srcphafile group_spectrum=yes\n\n";
  print FD "save spectrum resp=yes $srcphafile\n\n";
  print FD "\n\n";
  print FD "clear region\n\n";
  if ( -e $backregfile ) {
  print FD "filter region $backregfile \n";
  print FD "extract spectrum \n";
  print FD "save spectrum $backphafile group_spectrum=yes\n\n";
  }
  print FD "quit \n\n\n";
  close FD;


  $helpfile = "$helpdir/longrunningtime_warning.html";
  #system("cat $helpfile |xpaset $heraXPA helpPage 2>/dev/null");
  system("echo $helpfile |xpaset $heraXPA helpPage 2>/dev/null");

  print "Run  xselect \@comfile ";
  system("echo \"\n\n\n\n\" | xselect \@comfile");

  system ("rm -rf comfile.xco");

                            
          
#  system("echo \"$help\" |xpaset $pow helpPage");
#  print "Run pcarf $srcphafile CALDB $srcarffile CALDB\n";
##  system("pcarf $srcphafile CALDB '!$srcarffile' CALDB"); 
#  system("fkeypar $srcarffile\[1\] RESPFILE\n"); 
#  system("fkeypar $srcarffile+1 RESPFILE\n"); 
#  $tmprmffile = `pquery fkeypar value`;
#  $tmprmffile =~ s/\'//g;
#  chop ($tmprmffile);
#  print "cp $tmprmffile $srcrmffile\n";
#  system("cp $tmprmffile $srcrmffile");

#  system("fparkey $srcrmffile $srcphafile\[1\] RESPFILE add=yes");
#  system("fparkey $srcarffile $srcphafile\[1\] ANCRFILE add=yes");
#  system("fparkey $backphafile $srcphafile\[1\] BACKFILE add=yes");


  open FD,">comfile.xcm";
  print FD  "data $srcphafile\n";
#  if ( -e $backphafile ) {
#  print FD  "backgrnd $backphafile\n";
#  }
#  print FD  "response $srcrmffile\n";
#  print FD  "arf $srcarffile\n";
  print FD  "show\n";
  print FD  "cpd $device \n\n";
  print FD  "ignore bad \n\n";
  print FD  "setplot energy \n\n";
  print FD  "plot data \n\n";
  close FD;

  $helpfile = "$helpdir/acisxspec_1.html";
  #system("cat $helpfile |xpaset $heraXPA helpPage 2>/dev/null");
  system("echo $helpfile |xpaset $heraXPA helpPage 2>/dev/null");
  

  print "Run xspec - comfile.xcm\n";
  system("xspec - comfile.xcm"); 

#  system ("rm -rf comfile.xcm $srcphafile $backphafile  $srcarffile $tmpimgfile ");
#  system ("rm -rf comfile.xcm $srcphafile $backphafile  $srcarffile $tmpimgfile ");
  system ("rm -rf comfile.xcm $tmpimgfile ");

  return 0;


}


sub acisxspec_getpar {

 if (PILGetString("infile",$infile)) {
    print "Error to get parameter \"infile\"\n";
    exit(-1);
 }

 if (PILGetString("xcol",$xcol)) {
    print "Error to get parameter \"xcol\"\n";
    exit(-1);
 }

 if (PILGetString("ycol",$ycol)) {
    print "Error to get parameter \"ycol\"\n";
    exit(-1);
 }

 if (PILGetString("ra",$ra)){
    print "Error to get parameter \"ra\"\n";
    exit(-1);
 }

 if (PILGetString("dec",$dec)){
    print "Error to get parameter \"dec\"\n";
    exit(-1);
 }

 if (PILGetString("radius",$radius)){
    print "Error to get parameter \"radius\"\n";
    exit(-1);
 }

 if (PILGetInt("bin",$bin)){
    print "Error to get parameter \"bin\"\n";
    exit(-1);
 }

 if (PILGetInt("tbin",$tbin)){
    print "Error to get parameter \"tbin\"\n";
    exit(-1);
 }

 if (PILGetString("srcregfile",$srcregfile)){
    print "Error to get parameter \"srcregfile\"\n";
    exit(-1);
 }

 if (PILGetString("backregfile",$backregfile)){
    print "Error to get parameter \"backregfile\"\n";
    exit(-1);
 }
 if (PILGetString("timerngfile",$timerngfile)){
    print "Error to get parameter \"backregfile\"\n";
    exit(-1);
 }

 if (PILGetString("srcphafile",$srcphafile)){
    print "Error to get parameter \"srcphafile\"\n";
    exit(-1);
 }

 if (PILGetString("backphafile",$backphafile)){
    print "Error to get parameter \"backphafile\"\n";
    exit(-1);
 }
# if (PILGetString("srcarffile",$srcarffile)){
#    print "Error to get parameter \"srcarffile\"\n";
#    exit(-1);
# }
# if (PILGetString("srcrmffile",$srcrmffile)){
#    print "Error to get parameter \"srcarffile\"\n";
#    exit(-1);
# }
 if (PILGetString("tmpimgfile",$tmpimgfile)){
    print "Error to get parameter \"tmpimgfile\"\n";
    exit(-1);
 }
 if (PILGetString("device",$device)){
    print "Error to get parameter \"device\"\n";
    exit(-1);
 }
 if (PILGetReal("timeout",$timeout)){
    print "Error to get parameter \"timeout\"\n";
    exit(-1);
 }

}