/* File getftab.c * January 10, 2007 * By Jessica Mink Harvard-Smithsonian Center for Astrophysics) * Send bug reports to jmink@cfa.harvard.edu Copyright (C) 1999-2007 Smithsonian Astrophysical Observatory, Cambridge, MA USA This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA */ #include #include #include #include #include #include #include #include "libwcs/wcs.h" #include "libwcs/wcscat.h" #define MAXCOL 200 #define MAXCOND 10 #define MAXFILES 1000 #define MAXLINES 1000 static void usage(); static void PrintValues(); static int maxncond = 100; static char *RevMsg = "GETFTAB WCSTools 3.9.4, 2 August 2016, Jessica Mink (jmink@cfa.harvard.edu)"; static int verbose = 0; /* verbose/debugging flag */ static int nfile = 0; static int ndec = -9; static int maxlfn = 0; static int listall = 0; static int listpath = 0; static int tabout = 0; static int printhead = 0; static int assign = 0; static int version = 0; /* If 1, print only program name and version */ static int nlines = 0; static int nkeep = 0; static int *keeplines; /* List of lines to keep if nkeep > 0 */ static int ncond=0; /* Number of keyword conditions to check */ static int condand=1; /* If 1, AND comparisons, else OR */ static char **cond; /* Conditions to check */ static char **ccond; /* Comparison characters */ static char *tcond; /* Condition character */ struct TabTable *tabtable; main (ac, av) int ac; char **av; { char *str; char *kwd[MAXCOL]; char *alias[MAXCOL]; int ifile; int nkwd = 0; char *fn[MAXFILES]; int readlist = 0; int lfn; char *lastchar; char filename[128]; char *name; char ctemp; FILE *flist; char *listfile; int ikwd, lkwd, i; int lfield; char *kw1; char *cstr, *nstr; char string[80]; int icond; char *vali, *calias, *valeq, *valgt, *vallt; char *ranges = NULL; char *temp; int nldef = 1; int lstr; double dnum; struct Range *range; /* Range of sequence numbers to list */ /* Check for help or version command first */ str = *(av+1); if (!str || !strcmp (str, "help") || !strcmp (str, "-help")) usage(); if (!strcmp (str, "version") || !strcmp (str, "-version")) { version = 1; usage(); } cond = (char **)calloc (maxncond, sizeof(char *)); ccond = (char **)calloc (maxncond, sizeof(char *)); tcond = (char *)calloc (maxncond, sizeof(char)); nkwd = 0; ncond = 0; nfile = 0; /* crack arguments */ for (av++; --ac > 0; av++) { if (*(str = *av)=='-') { char c; while (c = *++str) switch (c) { case 'a': /* list file even if no keywords are found */ listall++; break; case 'e': /* output assignments */ assign++; break; case 'v': /* more verbosity */ verbose++; break; case 'h': /* output column headings */ printhead++; break; case 'n': /* number of decimal places in output */ if (ac < 2) usage(); ndec = (int) (atof (*++av)); ac--; break; case 'o': /* OR conditions insted of ANDing them */ condand = 0; break; case 'p': /* output column headings */ listpath++; break; case 't': /* output tab table */ tabout++; break; default: usage(); break; } continue; } /* Set range and make a list of line numbers from it */ else if (isrange (*av)) { if (ranges) { temp = ranges; ranges = (char *) calloc (strlen(ranges) + strlen(*av) + 2, 1); strcpy (ranges, temp); strcat (ranges, ","); strcat (ranges, *av); free (temp); } else { ranges = (char *) calloc (strlen(*av) + 1, 1); strcpy (ranges, *av); } continue; } /* If numeric argument, set line to be read */ else if (isnum (str)) { if (ranges) { temp = ranges; ranges = (char *)calloc (strlen(ranges)+strlen(*av)+2, 1); strcpy (ranges, temp); strcat (ranges, ","); strcat (ranges, *av); free (temp); } else { ranges = (char *) calloc (strlen(*av) + 1, 1); strcpy (ranges, *av); } continue; } else if (*av[0] == '@') { readlist++; listfile = *av + 1; nfile = 2; continue; } else if (!strcmp (*av, "stdin")) { fn[nfile] = *av; name = fn[nfile]; lfn = strlen (name); if (lfn > maxlfn) maxlfn = lfn; nfile++; continue; } /* Record condition else if (strchr (*av, '=') || strchr (*av, '<') || strchr (*av, '>')) { cond[ncond] = *av; if (ncond < MAXCOND) ncond++; continue; } */ /* Record column name with output alias */ else if (strchr (*av, '@')) { kwd[nkwd] = *av; calias = strchr (*av, '@'); alias[nkwd] = calias + 1; *calias = (char) 0; if (nkwd < MAXCOL) nkwd++; continue; } /* Record tab table file name */ else if (istab (*av)) { fn[nfile] = *av; if (listpath || (name = strrchr (fn[nfile],'/')) == NULL) name = fn[nfile]; else name = name + 1; lfn = strlen (name); if (lfn > maxlfn) maxlfn = lfn; if (nfile < MAXFILES) nfile++; continue; } /* Condition */ else if (strchr (*av, '=') != NULL || strchr (*av, '#') != NULL || strchr (*av, '>') != NULL || strchr (*av, '<') != NULL ) { if (ncond >= maxncond) { maxncond = maxncond * 2; cond = (char **)realloc((void *)cond,maxncond*sizeof(void *)); ccond = (char **)realloc((void *)ccond,maxncond*sizeof(void *)); tcond = (char *)realloc((void *)tcond,maxncond*sizeof(char)); } cond[ncond] = *av; cstr = strchr (*av, '='); if (cstr != NULL) tcond[ncond] = '='; else { cstr = strchr (*av, '#'); if (cstr != NULL) tcond[ncond] = '#'; else { cstr = strchr (*av, '>'); if (cstr != NULL) tcond[ncond] = '>'; else { cstr = strchr (*av, '<'); if (cstr != NULL) tcond[ncond] = '<'; else tcond[ncond] = (char) 0; } } } if (tcond[ncond]) { cstr[0] = (char) 0; cstr++; strfix (cstr, 0, 1); if (strchr (cstr, ':')) { dnum = str2dec (cstr); nstr = (char *) calloc (32, sizeof(char)); num2str (nstr, dnum, 0, 7); ccond[ncond] = nstr; } else { lstr = strlen (cstr); ccond[ncond] = (char *) calloc (lstr+2, sizeof(char)); strcpy (ccond[ncond], cstr); } ncond++; } } /* Record column name */ else { kwd[nkwd] = *av; alias[nkwd] = NULL; if (nkwd < MAXCOL) nkwd++; continue; } } /* Read from standard input if no file is specified */ if (nfile == 0 && (nkwd > 0 || ncond > 0)) { name = malloc (8); strcpy (name, "stdin"); fn[nfile] = name; lfn = strlen (name); if (lfn > maxlfn) maxlfn = lfn; nfile++; } /* Decode ranges */ if (ranges != NULL) { range = RangeInit (ranges, nldef); nkeep = rgetn (range); keeplines = (int *) calloc (1, nkeep); for (i = 0; i < nkeep; i++) keeplines[i] = rgeti4 (range); } if (nkwd > 0) { /* Print column headings if tab table or headings requested */ if (printhead || tabout) { /* Open the input tab table */ if ((tabtable = tabopen (fn[0], 0)) == NULL) { fprintf (stderr,"%s\n", gettaberr()); return (1); } /* Print the name of the table, if it has one */ if (tabtable->tabname != NULL) printf ("%s\n", tabtable->tabname); /* For tab table output, keep input header information */ if (tabout) { if (tabtable->tabheader != tabtable->tabhead) { ctemp = *(tabtable->tabhead-1); *(tabtable->tabhead-1) = (char) 0; printf ("%s\n", tabtable->tabheader); *(tabtable->tabhead-1) = ctemp; } } /* Print conditions in header */ for (icond = 0; icond < ncond; icond++) { if (verbose) { if (condand || icond == 0) printf ("%s\n",cond[icond]); else printf (" or %s\n",cond[icond]); } else if (tabout) { if (condand || icond == 0) printf ("condition %s %c %s\n", cond[icond], tcond[icond], ccond[icond]); else printf ("condition or %s %c %s\n", cond[icond], tcond[icond], ccond[icond]); } } /* If multiple files, add filename at start of output line */ if (nfile > 1) { printf ("filename"); if (maxlfn > 8) { for (i = 8; i < maxlfn; i++) printf (" "); } if (tabout) printf (" "); else printf (" "); } /* Print column names */ for (ikwd = 0; ikwd < nkwd; ikwd++) { if (alias[ikwd]) { kw1 = alias[ikwd]; lkwd = strlen (alias[ikwd]); } else { kw1 = kwd[ikwd]; lkwd = strlen (kwd[ikwd]); } printf ("%s",kw1); if ((i = tabcol (tabtable, kwd[ikwd])) > 0) { lfield = tabtable->lcfld[i-1]; if (lfield > 32) lfield = 32; } if (tabout && lfield > lkwd) { for (i = lkwd; i < lfield; i++) printf (" "); } if (verbose || ikwd == nkwd - 1) printf ("\n"); else if (tabout) printf (" "); else printf (" "); } /* Print field-defining hyphens if tab table output requested */ if (tabout) { for (ikwd = 0; ikwd < nkwd; ikwd++) { if ((i = tabcol (tabtable, kwd[ikwd])) > 0) { lfield = tabtable->lcfld[i-1]; for (i = 0; i < lfield; i++) printf ("-"); if (ikwd == nkwd - 1) printf ("\n"); else printf (" "); } } } } /* Get table values one at a time */ /* Read through tables in listfile */ if (readlist) { if ((flist = fopen (listfile, "r")) == NULL) { fprintf (stderr,"GETTAB: List file %s cannot be read\n", listfile); usage (); } while (fgets (filename, 128, flist) != NULL) { lastchar = filename + strlen (filename) - 1; if (*lastchar < 32) *lastchar = 0; PrintValues (filename,nkwd,kwd,alias); if (verbose) printf ("\n"); } fclose (flist); } /* Read tables from command line list */ else { for (ifile = 0; ifile < nfile; ifile++) PrintValues (fn[ifile],nkwd,kwd,alias); } } else { if (printhead || tabout) { /* Open the input tab table */ if (strcasecmp (name, "stdin")) { if ((tabtable = tabopen (fn[0], 0)) == NULL) { fprintf (stderr,"%s\n", gettaberr()); return (1); } } /* Print the name of the table, if it has one */ if (tabtable->tabname != NULL) printf ("%s\n", tabtable->tabname); /* For tab table output, keep input header information */ if (tabout) { if (tabtable->tabheader != tabtable->tabhead) { ctemp = *(tabtable->tabhead-1); *(tabtable->tabhead-1) = (char) 0; printf ("%s\n", tabtable->tabheader); *(tabtable->tabhead-1) = ctemp; } } /* Print conditions in header */ for (icond = 0; icond < ncond; icond++) { if (verbose) { if (condand || icond == 0) printf ("%s\n",cond[icond]); else printf (" or %s\n",cond[icond]); } else if (tabout) { if (condand || icond == 0) printf ("condition %s %c %s\n", cond[icond], tcond[icond], ccond[icond]); else printf ("condition or %s %c %s\n", cond[icond], tcond[icond], ccond[icond]); } } /* If multiple files, add filename at start of output line */ if (nfile > 1) { printf ("filename"); if (maxlfn > 8) { for (i = 8; i < maxlfn; i++) printf (" "); } if (tabout) printf (" "); else printf (" "); } /* Print column headers */ ctemp = *(tabtable->tabdata-1); *(tabtable->tabdata-1) = (char) 0; printf ("%s\n", tabtable->tabhead); *(tabtable->tabdata-1) = ctemp; } for (ifile = 0; ifile < nfile; ifile++) PrintValues (fn[ifile],nkwd,kwd,alias); } if (ccond != NULL) { for (i = 0; i < ncond; i++) free (ccond[i]); free (ccond); } if (cond != NULL) free (cond); if (tcond != NULL) free (tcond); return (0); } static void usage () { fprintf (stderr,"%s\n",RevMsg); if (version) exit (-1); fprintf (stderr,"Print FITS or IRAF header keyword values\n"); fprintf(stderr,"usage: gettab [-ahoptv][-n num] file1.tab ... filen.tab kw1 kw2 ... kwn\n"); fprintf(stderr," gettab [-ahoptv][-n num] @filelist kw1 kw2 ... kwn\n"); fprintf(stderr," gettab [-ahoptv][-n num] 0) { nextkeep = keeplines; lastkeep = keeplines[nkeep - 1]; } /* Figure out conditions first, separating out keywords to check */ /* Read tab table and set up data structure */ if (tabtable == NULL) { if ((tabtable = tabopen (name, 0)) == NULL) return; } if (verbose) { fprintf (stderr,"%s\n",RevMsg); fprintf (stderr,"Print table Values from tab table file %s\n", name); } /* Find file name */ if (listpath || (filename = strrchr (name,'/')) == NULL) filename = name; else filename = filename + 1; if (nfile > 1) { if (tabout) sprintf (fnform, "%%-%ds ", maxlfn); else sprintf (fnform, "%%-%ds ", maxlfn); sprintf (outline, fnform, filename); } nfound = 0; line = tabtable->tabdata; last = line + strlen (tabtable->tabdata); /* Find column numbers for column names to speed up comparisons */ if (ncond > 0) { ccol = (int *) calloc (ncond, sizeof (int)); ccol[0] = 0; for (icond = 0; icond < ncond; icond++) ccol[icond] = tabcol (tabtable, cond[icond]); } /* Find column numbers for column names to speed up extraction */ col = (int *) calloc (nkwd, sizeof (int)); col[0] = 0; for (ikwd = 0; ikwd < nkwd; ikwd++) col[ikwd] = tabcol (tabtable, kwd[ikwd]); iline = 0; while (line != NULL && line < last) { if (*line == (char)12) break; if (*line != newline) { outline[0] = (char) 0; /* Check line number if extracting specific lines */ iline++; drop = 0; if (nkeep > 0) { if (iline != *nextkeep) pass = 0; else if (*nextkeep < lastkeep) { pass = 1; nextkeep++; } } else pass = 0; /* Check conditions */ ntok = setoken (&tokens, line, "tab"); if (ncond > 0) { for (icond = 0; icond < ncond; icond++) { if (condand) pass = 0; /* Extract test value from comparison string */ cstr = ccond[icond]; /* Read comparison value from tab table */ if (tabgetc (&tokens, ccol[icond], cvalue, 64)) continue; cval = cvalue; if (strchr (cval, ':')) { dnum = str2dec (cval); num2str (numstr1, dnum, 0, 7); cval = numstr1; } strfix (cval, 0, 1); /* Compare floating point numbers */ if (isnum (cstr) == 2 && isnum (cval)) { dcond = atof (cstr); dval = atof (cval); if (tcond[icond] == '=' && dval == dcond) pass = 1; else if (tcond[icond] == '#' && dval != dcond) pass = 1; else if (tcond[icond] == '>' && dval > dcond) pass = 1; else if (tcond[icond] == '<' && dval < dcond) pass = 1; } /* Compare integers */ else if (isnum (cstr) == 1 && isnum (cval)) { jcond = atoi (cstr); jval = atoi (cval); if (tcond[icond] == '=' && jval == jcond) pass = 1; else if (tcond[icond] == '#' && jval != jcond) pass = 1; else if (tcond[icond] == '>' && jval > jcond) pass = 1; else if (tcond[icond] == '<' && jval < jcond) pass = 1; } /* Compare strings (only equal or not equal */ else { if (tcond[icond] == '=' && !strcmp (cstr, cval)) pass = 1; else if (tcond[icond] == '#' && strcmp (cstr, cval)) pass = 1; } if (condand && !pass) break; } if (!pass) { line = strchr (line+1, newline); if (line == NULL) break; if (strlen (line) < 1) break; if (*++line == (char) 0) break; continue; } } /* Extract desired columns */ if (nkwd == 0) { endline = strchr (line+1, newline); if (endline == NULL) break; else { *endline = 0; printf ("%s\n", line); *endline = newline; } } else { ntok = setoken (&tokens, line, "tab"); for (ikwd = 0; ikwd < nkwd; ikwd++) { if (!tabgetc (&tokens, col[ikwd], string, 80)) { str = strfix (string, 0, 0); if (ndec > -9 && isnum (str) && strchr (str, '.')) num2str (str, atof(str), 0, ndec); if (verbose) { if (alias[ikwd]) printf ("%s/%s = %s",kwd[ikwd],alias[ikwd],str); else printf ("%s = %s", kwd[ikwd], str); } else if (assign) { if (alias[ikwd]) strcat (outline, alias[ikwd]); else strcat (outline, kwd[ikwd]); strcat (outline, "="); strcat (outline, str); } else strcat (outline, str); nfound++; } else if (verbose) printf ("%s not found", kwd[ikwd]); else strcat (outline, "___"); if (verbose) printf ("\n"); else if (ikwd < nkwd-1) { if (tabout) strcat (outline, " "); else strcat (outline, " "); } } if (!verbose && (nfile < 2 || nfound > 0 || listall)) printf ("%s\n", outline); } } line = strchr (line+1, newline); if (line == NULL) break; if (strlen (line) < 1) break; if (*++line == (char) 0) break; if (nkeep > 0 && *nextkeep == lastkeep) break; } tabclose (tabtable); tabtable = NULL; return; } /* Jan 22 1999 New program * Jan 25 1999 Keep header information * Mar 9 1999 Add range of lines; rework command line decoding logic * Oct 22 1999 Drop unused variables after lint * * Jan 3 2000 Use isrange() to check for ranges * Jan 4 2000 If no keywords are specified, print entire line if tests met * Feb 16 2000 Always open tab table if printing headers OR putting out tab * May 26 2000 Handle multiple tables in a single file * May 26 2000 Print full header if all columns asked for * * Jun 11 2001 Add buffer size argument to tabopen() * Jun 18 2001 Use token parsing to speed column extraction * Jun 29 2001 Open stdin only once * Oct 10 2001 Fix bugs in condition handling * * Feb 21 2002 Improve line range implementation * Apr 10 2002 Fix bug dealing with ranges * * Jan 22 2004 Increase maximum number of columns from 100 to 200 * Apr 15 2004 Avoid removing trailing zeroes from exponents * * Jun 29 2006 Rename strclean() strfix() and move to hget.c * * Jan 10 2007 Declare RevMsg static, not const */