###################################################################### # # # YOU MAY REDISTRIBUTE THE CBFLIB PACKAGE UNDER THE TERMS OF THE GPL # # # # ALTERNATIVELY YOU MAY REDISTRIBUTE THE CBFLIB API UNDER THE TERMS # # OF THE LGPL # # # ###################################################################### ########################### GPL NOTICES ############################## # # # This program is free software; you can redistribute it and/or # # modify it under the terms of the GNU General Public License as # # published by the Free Software Foundation; either version 2 of # # (the License, or (at your option) any later version. # # # # This program is distributed in the hope that it will be useful, # # but WITHOUT ANY WARRANTY; without even the implied warranty of # # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # # GNU General Public License for more details. # # # # You should have received a copy of the GNU General Public License # # along with this program; if not, write to the Free Software # # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA # # 02111-1307 USA # # # ###################################################################### ######################### LGPL NOTICES ############################### # # # This library is free software; you can redistribute it and/or # # modify it under the terms of the GNU Lesser General Public # # License as published by the Free Software Foundation; either # # version 2.1 of the License, or (at your option) any later version. # # # # This library is distributed in the hope that it will be useful, # # but WITHOUT ANY WARRANTY; without even the implied warranty of # # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # # Lesser General Public License for more details. # # # # You should have received a copy of the GNU Lesser General Public # # License along with this library; if not, write to the Free # # Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, # # MA 02110-1301 USA # # # ###################################################################### ###################################################################### # # # Stanford University Notices # # for the CBFlib software package that incorporates SLAC software # # on which copyright is disclaimed # # # # This software # # ------------- # # The term "this software", as used in these Notices, refers to # # those portions of the software package CBFlib that were created by # # employees of the Stanford Linear Accelerator Center, Stanford # # University. # # # # Stanford disclaimer of copyright # # -------------------------------- # # Stanford University, owner of the copyright, hereby disclaims its # # copyright and all other rights in this software. Hence, anyone # # may freely use it for any purpose without restriction. # # # # Acknowledgement of sponsorship # # ------------------------------ # # This software was produced by the Stanford Linear Accelerator # # Center, Stanford University, under Contract DE-AC03-76SFO0515 with # # the Department of Energy. # # # # Government disclaimer of liability # # ---------------------------------- # # Neither the United States nor the United States Department of # # Energy, nor any of their employees, makes any warranty, express or # # implied, or assumes any legal liability or responsibility for the # # accuracy, completeness, or usefulness of any data, apparatus, # # product, or process disclosed, or represents that its use would # # not infringe privately owned rights. # # # # Stanford disclaimer of liability # # -------------------------------- # # Stanford University makes no representations or warranties, # # express or implied, nor assumes any liability for the use of this # # software. # # # # Maintenance of notices # # ---------------------- # # In the interest of clarity regarding the origin and status of this # # software, this and all the preceding Stanford University notices # # are to remain affixed to any copy or derivative of this software # # made or distributed by the recipient and are to be affixed to any # # copy of software made or distributed by the recipient that # # contains a copy or derivative of this software. # # # # Based on SLAC Software Notices, Set 4 # # OTT.002a, 2004 FEB 03 # ###################################################################### ###################################################################### # NOTICE # # Creative endeavors depend on the lively exchange of ideas. There # # are laws and customs which establish rights and responsibilities # # for authors and the users of what authors create. This notice # # is not intended to prevent you from using the software and # # documents in this package, but to ensure that there are no # # misunderstandings about terms and conditions of such use. # # # # Please read the following notice carefully. If you do not # # understand any portion of this notice, please seek appropriate # # professional legal advice before making use of the software and # # documents included in this software package. In addition to # # whatever other steps you may be obliged to take to respect the # # intellectual property rights of the various parties involved, if # # you do make use of the software and documents in this package, # # please give credit where credit is due by citing this package, # # its authors and the URL or other source from which you obtained # # it, or equivalent primary references in the literature with the # # same authors. # # # # Some of the software and documents included within this software # # package are the intellectual property of various parties, and # # placement in this package does not in any way imply that any # # such rights have in any way been waived or diminished. # # # # With respect to any software or documents for which a copyright # # exists, ALL RIGHTS ARE RESERVED TO THE OWNERS OF SUCH COPYRIGHT. # # # # Even though the authors of the various documents and software # # found here have made a good faith effort to ensure that the # # documents are correct and that the software performs according # # to its documentation, and we would greatly appreciate hearing of # # any problems you may encounter, the programs and documents any # # files created by the programs are provided **AS IS** without any * # warranty as to correctness, merchantability or fitness for any # # particular or general use. # # # # THE RESPONSIBILITY FOR ANY ADVERSE CONSEQUENCES FROM THE USE OF # # PROGRAMS OR DOCUMENTS OR ANY FILE OR FILES CREATED BY USE OF THE # # PROGRAMS OR DOCUMENTS LIES SOLELY WITH THE USERS OF THE PROGRAMS # # OR DOCUMENTS OR FILE OR FILES AND NOT WITH AUTHORS OF THE # # PROGRAMS OR DOCUMENTS. # ###################################################################### ###################################################################### # # # The IUCr Policy # # for the Protection and the Promotion of the STAR File and # # CIF Standards for Exchanging and Archiving Electronic Data # # # # Overview # # # # The Crystallographic Information File (CIF)[1] is a standard for # # information interchange promulgated by the International Union of # # Crystallography (IUCr). CIF (Hall, Allen & Brown, 1991) is the # # recommended method for submitting publications to Acta # # Crystallographica Section C and reports of crystal structure # # determinations to other sections of Acta Crystallographica # # and many other journals. The syntax of a CIF is a subset of the # # more general STAR File[2] format. The CIF and STAR File approaches # # are used increasingly in the structural sciences for data exchange # # and archiving, and are having a significant influence on these # # activities in other fields. # # # # Statement of intent # # # # The IUCr's interest in the STAR File is as a general data # # interchange standard for science, and its interest in the CIF, # # a conformant derivative of the STAR File, is as a concise data # # exchange and archival standard for crystallography and structural # # science. # # # # Protection of the standards # # # # To protect the STAR File and the CIF as standards for # # interchanging and archiving electronic data, the IUCr, on behalf # # of the scientific community, # # # # # holds the copyrights on the standards themselves, * # # # # owns the associated trademarks and service marks, and * # # # # holds a patent on the STAR File. * # # # These intellectual property rights relate solely to the # # interchange formats, not to the data contained therein, nor to # # the software used in the generation, access or manipulation of # # the data. # # # # Promotion of the standards # # # # The sole requirement that the IUCr, in its protective role, # # imposes on software purporting to process STAR File or CIF data # # is that the following conditions be met prior to sale or # # distribution. # # # # # Software claiming to read files written to either the STAR * # File or the CIF standard must be able to extract the pertinent # # data from a file conformant to the STAR File syntax, or the CIF # # syntax, respectively. # # # # # Software claiming to write files in either the STAR File, or * # the CIF, standard must produce files that are conformant to the # # STAR File syntax, or the CIF syntax, respectively. # # # # # Software claiming to read definitions from a specific data * # dictionary approved by the IUCr must be able to extract any # # pertinent definition which is conformant to the dictionary # # definition language (DDL)[3] associated with that dictionary. # # # # The IUCr, through its Committee on CIF Standards, will assist # # any developer to verify that software meets these conformance # # conditions. # # # # Glossary of terms # # # # [1] CIF: is a data file conformant to the file syntax defined # # at http://www.iucr.org/iucr-top/cif/spec/index.html # # # # [2] STAR File: is a data file conformant to the file syntax # # defined at http://www.iucr.org/iucr-top/cif/spec/star/index.html # # # # [3] DDL: is a language used in a data dictionary to define data # # items in terms of "attributes". Dictionaries currently approved # # by the IUCr, and the DDL versions used to construct these # # dictionaries, are listed at # # http://www.iucr.org/iucr-top/cif/spec/ddl/index.html # # # # Last modified: 30 September 2000 # # # # IUCr Policy Copyright (C) 2000 International Union of # # Crystallography # ###################################################################### # diff -au <(./h5dump i19-1.h5 | tail -n +1) <(./h5dump i19-2.h5 | tail -n +1) # The data being compared has been read by 'cbf2nexus', a strong test ensures that # all data that is read can be retained indefinately. message(STATUS "Dumping HDF 1 output...") execute_process( COMMAND ${HDF5_BINARY_DIR}/h5dump ${CBF__DATA}/${test_output_prefix}-1.h5 OUTPUT_FILE ${CBF__DATA}/${test_output_prefix}-1.full.dump RESULT_VARIABLE result ) if (result) message(FATAL_ERROR "failed") endif () message(STATUS "Stripping off file name...") execute_process( COMMAND ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/cbf_tail -n 1 INPUT_FILE ${CBF__DATA}/${test_output_prefix}-1.full.dump OUTPUT_FILE ${CBF__DATA}/${test_output_prefix}-1.dump RESULT_VARIABLE result ) if (result) message(FATAL_ERROR "failed") endif () message(STATUS "Dumping HDF 2 output...") execute_process( COMMAND ${HDF5_BINARY_DIR}/h5dump ${CBF__DATA}/${test_output_prefix}-2.h5 OUTPUT_FILE ${CBF__DATA}/${test_output_prefix}-2.full.dump RESULT_VARIABLE result ) if (result) message(FATAL_ERROR "failed") endif () message(STATUS "Stripping off file name...") execute_process( COMMAND ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/cbf_tail -n 1 INPUT_FILE ${CBF__DATA}/${test_output_prefix}-2.full.dump OUTPUT_FILE ${CBF__DATA}/${test_output_prefix}-2.dump RESULT_VARIABLE result ) if (result) message(FATAL_ERROR "failed") endif () message(STATUS "Comparing...") execute_process( COMMAND ${CMAKE_COMMAND} -E compare_files ${CBF__DATA}/${test_output_prefix}-1.dump ${CBF__DATA}/${test_output_prefix}-2.dump RESULT_VARIABLE result ) if (result) message(FATAL_ERROR "failed") endif ()