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CCP4i: Graphical User Interface |
| Additional Programs |
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The following packages are part of the CCP4 package but may not be installed on your system by default. As a result the associated task interfaces may be disabled (with the task button greyed out) when you run CCP4i:
CCP4i has interfaces to some non-CCP4 programs, and some non-CCP4 packages have their own CCP4i interfaces. The following packages have to obtained separately but then can be used from within CCP4i once they have been installed on your system:
For information on how to install these packages, see Installing New Task Interfaces.
In the "Data Reduction" module
Integration of diffraction images using the MOSFLM program in batch mode. MOSFLM is included as a standard part of the CCP4 package; if building the suite from source code then the --with-x option of configure must be specified in order to build the program. Otherwise MOSFLM is included in the precompiled CCP4 distributions.
make Pirate reference
Run Pirate
Clipper crystallographic software and utilities. These should be present on your system by default unless a) you built from source code and specified the --disable-clipper option of configure; b) you downloaded precompiled CCP4 for a system which doesn't support Clipper (e.g. OSF1 V4.0).
In the "Molecular Replacement" module
Crystallographic software for phasing macromolecular crystal structures with maximum likelihood techniques. This can be obtained as source code for most systems from the CCP4 website as an optional component of the CCP4 suite, and should be included as a standard part of the precompiled CCP4.
In the "Model Building" module
Automated Refinement Package for model building available from http://www.arp-warp.org/.
In the "Coordinate utilities" module
Multiple Sequence Alignments program. ClustalW can be downloaded from http://www.ebi.ac.uk/clustalw/.
In the "Molecular Replacement" module
Building homology models and automatic editing of protein structure after molecular replacement (the Edit Protein Structure task in Molecular Replacement module). This can be obtained from http://salilab.org/modeller/modeller.html.
In the "Experimental Phasing" module
Programs for direct methods and Patterson search obtainable from http://shelx.uni-ac.gwdg.de/SHELX/. In addition to the SHELX C/D/E and SHELXS tasks the SHELX programs can also be used in the CRANK interface.
In the "Validation and Deposition" module
The protein verification tools from the WHAT IF program. WHAT_CHECK is available from http://www.cmbi.kun.nl/gv/whatcheck/.
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