CCP4: Model Building roadmap

	CCP4 Roadmaps
	MODEL BUILDING

Model Building roadmap

diagram created with dot, from the graphviz package

ARP/wARP: Automated Refinement Procedure for refining protein structures
ASTEXVIEWER: Java program for display molecular structures and electron density maps
BONES2PDB: Make a PDB pseudo-coordinate file from a bones file
FFFEAR: Fast Fourier feature recognition for density fitting
FFJOIN: Joining model fragments from FFFear
MAMA2CCP4: Convert between 'mama' and Cambridge/CCP4 map formats
MAP2FS: Convert CCP4 map to XtalView fsfour format
MAPDUMP: Print a dump of sections of a map file
MAPMASK: Map/mask extend program
MAPTONA4: Convert binary map file to and from na4 ASCII format
OMIT: Calculate omit-maps according to Bhat procedure
PEAKMAX: Search for peaks in electron density map
ROTAMER: List amino acids whose side chain torsion angles deviate from the Penultimate Rotamer Library
STEREO: Extract coordinates from stereo diagrams
XDLMAPMAN: Manipulation, analysis and reformatting of electron density maps

ARP/wARP Home Page: Improvement and objective interpretation of maps, and automatic construction and refinement of macromolecular models
MODELLER: Homology protein structure modelling by satisfaction of spatial restraints; also part of CCP4i
HIC-Up: Server for heterocompounds