#===========================================================================
#
# phaser_ATOM.script
#
#===========================================================================
 
  set OUTPUT_FILE_ROOT "[SetOutputFileRoot]"

  CreateComScript phaser_ATOM phaser_ATOM_script -ampersand

  set cmd "[BinPath phaser]"

  set status [Execute $cmd $phaser_ATOM_script program_status report]

  set SUM_FILE "[SetOutputFileRoot].sum"
  if { [file exists $SUM_FILE] } { AddOutputFile $SUM_FILE PROJECT }

  set SOL_FILE "[SetOutputFileRoot].sol"
  if { [file exists $SOL_FILE] } { AddOutputFile $SOL_FILE PROJECT }

# Check if any pdb or mtz files have been generated,
#   to add them to the output file list
# Value of 100 for MAXFILES is more than Phaser default will ever be.
# Default is 1 (probably)
   if [IfSet $XYZOUT_NPDB] {
     set MAXFILES $XYZOUT_NPDB
   } else {
     set MAXFILES 100 
   }
   for { set n 1 } { $n <= $MAXFILES } { incr n } {
     set PDB_FILE($n) "[SetOutputFileRoot].$n.pdb"
     if { [file exists $PDB_FILE($n)] } { AddOutputFile $PDB_FILE($n) PROJECT }
     set MTZ_FILE($n) "[SetOutputFileRoot].$n.mtz"
     if { [file exists $MTZ_FILE($n)] } { AddOutputFile $MTZ_FILE($n) PROJECT }
   }