#!/bin/sh
set -e
# CVS Id $Id$
#
# Martyn Winn Jul. 1997
#
# make an html list of references
#
# **** Not intended for public release ****
#
referencefile=REFERENCES.html
cat <<\+ >$referencefile # header
CCP4 Program References
CCP4 v6.5.0 Program References
Any publication arising from use of the CCP4 software suite should include
both references to the specific programs used (see below) and the following
reference to the CCP4 suite:
M. D. Winn et al. Acta. Cryst. D67, 235-242 (2011)
"Overview of the CCP4 suite and current developments"
[ doi:10.1107/S0907444910045749 ]
Such citations are vital to the CCP4 project, and individual program authors,
in maintaining funding and thus being able to develop CCP4 further.
The following list is meant as an aid to citation of individual programs, but
is not complete. It has been extracted from the individual program
documentation, so look there for more details. In addition, many relevant
articles can be found in the proceedings of the 2010 Study Weekend, published
as a special issue of Acta Cryst D.
+
# Loop over all html files
for name in refmac5/references.html *.html ; do
# Do not look at files without "startreferencelist" string.
if test `grep startreferencelist $name | wc -l` -lt 1 ; then
continue
elif test $name = "REFERENCE.html" ; then
continue
elif test $name = "REFERENCE_tmp.html" ; then
continue
fi
echo "Examining $name ..."
# Write program name
awk '
/INDEX_INFO/ {
numfields = split($0,array,/::/)
for (count = 1; count <= numfields; count++) {
if (array[count]=="INDEX_INFO") title = tolower(array[count+1])
}
print " " title "
"
exit
} ' $name >>$referencefile
# Write references between
# Takes everything between
# and
cat <<\+ >>$referencefile
+
awk '
/startreferencelist/ {
getline
while (index($0,"endreferencelist") == 0) {
print $0
getline }
} ' $name >>$referencefile
cat <<\+ >>$referencefile
+
done
cat <<\+ >>$referencefile
+
echo " "
echo "Writing to REFERENCES.html"
#