#CCP4I VERSION CCP4Interface 1.3.8
#CCP4I SCRIPT DEF sculptor
#CCP4I DATE 26/11/02
#CCP4I USER ameb

TITLE                           _title_text                   ""
PDBIN                           _pdb_file                     ""
DIR_PDBIN                       _default_dirs                 ""
NALIGNMENTS                     _positiveint                  0
ALNIN,0                         _any_file                     ""
DIR_ALNIN,0                     _default_dirs                 ""

INPUT_FILES                     _list_of_text                 ""
OUTPUT_FILES                    _list_of_text                 ""

SCULPTOR_MODE                   _sculptor_mode                "PREDEFINED"

RENUMBER_MODE                   _renumber_mode                "target"
RENAME_MODE                     _logical                      1
NHETEROS                        _positiveint                  0
HETERO,0                        _res_id                       ""

USE_ALL_PROTOCOLS               _protocol_mode                1
NPROTOCOLS                      _positiveint                  1
PROTOCOL,0                      _sculptor_protocol            "protocol1"

USE_DELETION_GAP                _logical                      1
USE_DELETION_COMP               _logical                      0
DELETION_COMP_COMPLETENESS      _real                         0.0
DELETION_COMP_CALC_MATRIX       _scoring_matrix               "blosum62"
DELETION_COMP_CALC_WINDOW       _positiveint                  5
DELETION_COMP_CALC_WEIGHTING    _weighting_scheme             "triangular"
USE_DELETION_THR                _logical                      0
DELETION_THR_THRESHOLD          _real                         -0.2
DELETION_THR_CALC_MATRIX        _scoring_matrix               "blosum62"
DELETION_THR_CALC_WINDOW        _positiveint                  5
DELETION_THR_CALC_WEIGHTING     _weighting_scheme             "triangular"

USE_POLISHING_RS                _logical                      0
POLISHING_RS_MIN                _positiveint                  3
USE_POLISHING_KR                _logical                      0
POLISHING_KR_MAX                _positiveint                  1

USE_PRUNING_SCH                 _logical                      1
PRUNING_SCH_LEVEL               _positiveint                  2
USE_PRUNING_SIM                 _logical                      0
PRUNING_SIM_LEVEL               _positiveint                  2
PRUNING_SIM_UPPER               _real                         0.2
PRUNING_SIM_LOWER               _real                         -0.2
PRUNING_SIM_CALC_MATRIX         _scoring_matrix               "blosum62"
PRUNING_SIM_CALC_WINDOW         _positiveint                  5
PRUNING_SIM_CALC_WEIGHTING      _weighting_scheme             "triangular"

USE_CBETA                       _logical                      0

BFACTOR_MINIMUM                 _real                         10.0
USE_BFACTOR_ORIGINAL            _logical                      0
BFACTOR_ORIGINAL_FACTOR         _real                         1.0
USE_BFACTOR_SIM                 _logical                      0
BFACTOR_SIM_FACTOR              _real                         -100.0
BFACTOR_SIM_CALC_MATRIX         _scoring_matrix               "blosum62"
BFACTOR_SIM_CALC_WINDOW         _positiveint                  5
BFACTOR_SIM_CALC_WEIGHTING      _weighting_scheme             "triangular"
USE_BFACTOR_ASA                 _logical                      0
BFACTOR_ASA_FACTOR              _real                         8
BFACTOR_ASA_CALC_PRECISION      _positiveint                  960
BFACTOR_ASA_CALC_RADIUS         _positivereal                 1.4
