Module: Bond Angle View ()

Description:

The Bond Angle View offers an alternative to the MoleculeView. This viewing module, however, does not display atoms and bonds but, as the name suggests, bond angles, i.e., for every three atoms connected by two bonds a triangle, will be shown. The vertex colors are linearly interpolated across the triangle. Apart from coloring the molecule as is done in the Molecule View, the bond angles can be colored according to a specified color field, e.g., the electrostatic potential, and a colormap. Here, in addition to interpolating the colors, texture mapping can be applied which interpolates the texture coordinates.

Connections:

Data [required]
Molecule to be visualized.

ColorField [optional]
Scalar field that can be displayed on the bond angle by pseudo-coloring.

Colormap [optional]
Colormap needed in conjunction with the color field.

Continuous CM [optional]
Colormap that is used to map values of float attributes to colors.

Discrete CM [optional]
Colormap that is used to map values of discrete attributes, like integers and strings, to colors.

Ports:

Colormap

This port becomes visible only if a scalar field has been connected to the color field port.

Draw Style

This port is inherited from the View Base module.

Transparency

If the draw style is set to transparent, this port lets you configure the degree of transparency.

Highlighting

For an explanation of this port, see the description in the general section on display of molecules.

Buffer

For an explanation of this port, see the description in the general section on display of molecules.

Coloring

Color Mode

Allows you to switch between normal coloring mode and coloring according to a scalar field.

Define Color

For an explanation of this port, see the description in the general section on display of molecules.

Color




For an explanation of the four ports above, see the description in the general section on display of molecules.