# --- UCSF Chimera Copyright --- # Copyright (c) 2000 Regents of the University of California. # All rights reserved. This software provided pursuant to a # license agreement containing restrictions on its disclosure, # duplication and use. This notice must be embedded in or # attached to all copies, including partial copies, of the # software or any revisions or derivations thereof. # --- UCSF Chimera Copyright --- self.schemas = ["Hydrophobic", "Positive", "Negative", "Polar", "Charged", "Small", "Tiny", "Aromatic", "Aliphatic"] self.residues = ["ALA", "ARG", "ASN", "ASP", "CYS", "GLU", "GLN", "GLY", "HIS", "ILE", "LEU", "LYS", "MET", "PHE", "PRO", "SER", "THR", "TRP", "TYR", "VAL"] self.selections = { "Hydrophobic": [1, 0, 0, 0, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 1, 1, 1], "Positive": [0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0], "Negative": [0, 0, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], "Polar": [0, 1, 1, 1, 0, 1, 1, 0, 1, 0, 0, 1, 0, 0, 0, 1, 1, 1, 1, 0], "Charged": [0, 1, 0, 1, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0], "Small": [1, 0, 1, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 1], "Tiny": [1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0], "Aromatic": [0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 0], "Aliphatic": [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1] } self.colorSchemes = {} for schema in self.schemas: self.colorSchemes[schema] = { _strSelSide: 'green', _strUnselSide: 'yellow', _strSelMain: 'white', _strUnselMain: 'white', _strOther: None }