// $Id: Salts.txt 198 2006-12-15 18:06:48Z landrgr1 $ // Created by Greg Landrum, December 2006 // Definitions from Thomas Zoller // // Version history: // 15 Dec, 2006: created (GL) // Notes: // 1) don't include charges // 2) The search for salts is a substructure search where the substructure // must match the entire fragment, so we don't need to be choosy about bond // types // 3) The matching is done in order, so if you put the more complex stuff at the // bottom the "don't remove the last fragment" algorithm has a chance of // of returning something sensible // start with simple inorganics: [Cl,Br,I] [Li,Na,K,Ca,Mg] [O,N] // "complex" inorganics [N](=O)(O)O [P](=O)(O)(O)O [P](F)(F)(F)(F)(F)F [S](=O)(=O)(O)O [CH3][S](=O)(=O)(O) c1cc([CH3])ccc1[S](=O)(=O)(O) p-Toluene sulfonate // organics [CH3]C(=O)O Acetic acid FC(F)(F)C(=O)O TFA OC(=O)C=CC(=O)O Fumarate/Maleate OC(=O)C(=O)O Oxalate OC(=O)C(O)C(O)C(=O)O Tartrate C1CCCCC1[NH]C1CCCCC1 Dicylcohexylammonium // Copyright (c) 2010, Novartis Institutes for BioMedical Research Inc. // All rights reserved. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions are // met: // // * Redistributions of source code must retain the above copyright // notice, this list of conditions and the following disclaimer. // * Redistributions in binary form must reproduce the above // copyright notice, this list of conditions and the following // disclaimer in the documentation and/or other materials provided // with the distribution. // * Neither the name of Novartis Institutes for BioMedical Research Inc. // nor the names of its contributors may be used to endorse or promote // products derived from this software without specific prior written permission. // // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS // "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT // LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR // A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT // OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, // SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT // LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, // DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY // THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT // (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE // OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. //