#!/bin/bash cd `dirname "$0"` dir=`pwd` master=`dirname $dir` subdir=`basename $dir` ################### confirm licence ################### if [ -f $HOME/.agree2ccp4v6 ]; then agreed=yes else more conditions.txt echo echo -n "Do you accept the terms of the license? y/n [n] " read ans if [ "$ans" = y -o $ans = Y -o $ans = yes -o $ans = YES ]; then agreed=yes fi fi if [ "$agreed" = "yes" ]; then echo `date` "$subdir" >> $HOME/.agree2ccp4v6 else echo " You have indicated that you do not agree to the conditions"; echo " of use for the CCP4 package. Please delete all CCP4 software"; echo " from your system. If you have any further queries please refer "; echo " to the CCP4 web pages on http://www.ccp4.ac.uk/ or contact" ; echo " ccp4@ccp4.ac.uk"; exit 1 fi ################### final setup ################### echo 'Setting up paths...' sed "s|\(CCP4_MASTER=\).*|\1$master|" include/ccp4.setup-sh.in | \ sed "s|\(CCP4=\$CCP4_MASTER/\).*|\1$subdir|" > bin/ccpem.setup-sh sed "s|\(setenv CCP4_MASTER.\).*|\1$master|" include/ccp4.setup-csh.in | \ sed "s|\(setenv CCP4.*\$CCP4_MASTER/\).*|\1$subdir|" > bin/ccpem.setup-csh #if [ "$(uname)" = "Linux" ]; then ## Since libgfortran and libstdc++ are backward compatible use the system ## versions if available (it may be more efficient). ## Otherwise, the bundled copies are "activated" by creating links. ## In case of libgfortran.so.3, SLES11 has older version that CentOS5 ## and there are concerns about installation on heterogenous Linux network, ## so always use bundled libgfortran. (But not always bundled libstdc++: ## it would not work on RHEL4 due to too old glibc) # rm -f lib/libgfortran.so.3 lib/libstdc++.so.6 lib/libgomp.so.1 # (cd lib && ln -s libgfortran.so.3.?.? libgfortran.so.3) # if ( ldd bin/pisa | grep -q 'libstdc++.so.6 => not found' ); then # (cd lib && ln -s libstdc++.so.6.?.? libstdc++.so.6) # echo "using bundled libstdc++.so.6" # fi # if ( ldd bin/phaser | grep -q 'libgomp.so.1 => not found' ); then # (cd lib && ln -s libgomp.so.1.?.? libgomp.so.1) # echo "using bundled libgomp.so.1" # fi #fi # the --minimal option is for quick testing only [ "$1" = "--minimal" ] && exit echo 'Compiling py-files' (CCP4=$dir $dir/bin/ccpem-python -Wignore -m compileall \ $dir/lib/py2 $dir/lib/python2.7 >/dev/null) ################### checks for common problems ################### if [ -n "$CCP4" ]; then echo 'WARNING: $CCP4 is already set.' if [ "$CCP4" != "$dir" ]; then echo 'WARNING: $CCP4 is set to different directory.' fi fi if [ -n "$TCL_LIBRARY" ]; then echo 'WARNING: You have set $TCL_LIBRARY. Unset it or expect problems.' fi if [ -n "$TK_LIBRARY" ]; then echo 'WARNING: You have set $TK_LIBRARY. Unset it or expect problems.' fi if [ -n "$GFORTRAN_UNBUFFERED_ALL" ]; then echo 'WARNING: You have set $GFORTRAN_UNBUFFERED_ALL.' echo ' It makes some programs running much slower.' fi if ! $dir/bin/refmac5 -i >/dev/null; then echo "Starting an example CCP4 program failed !!!" echo "Make sure you downloaded version for you operating system." fi echo echo " Before running CCPEM programs from command line," echo " source bin/ccpem.setup-sh" echo " (or bin/ccpem.setup-csh if you use csh)." echo