README.rst setup.py conkit/__init__.py conkit/_version.py conkit/constants.py conkit.egg-info/PKG-INFO conkit.egg-info/SOURCES.txt conkit.egg-info/dependency_links.txt conkit.egg-info/not-zip-safe conkit.egg-info/requires.txt conkit.egg-info/top_level.txt conkit/applications/Bbcontacts.py conkit/applications/CCMpred.py conkit/applications/Cdhit.py conkit/applications/HHblits.py conkit/applications/HHfilter.py conkit/applications/Jackhmmer.py conkit/applications/Psicov.py conkit/applications/__init__.py conkit/core/Contact.py conkit/core/ContactFile.py conkit/core/ContactMap.py conkit/core/Entity.py conkit/core/Sequence.py conkit/core/SequenceFile.py conkit/core/__init__.py conkit/io/A3mIO.py conkit/io/BCLContactIO.py conkit/io/BbcontactsIO.py conkit/io/CCMpredIO.py conkit/io/CaspIO.py conkit/io/ComsatIO.py conkit/io/EPCMapIO.py conkit/io/EVfoldIO.py conkit/io/FastaIO.py conkit/io/FreeContactIO.py conkit/io/GremlinIO.py conkit/io/JonesIO.py conkit/io/MemBrainIO.py conkit/io/PconsIO.py conkit/io/PdbIO.py conkit/io/PlmDCAIO.py conkit/io/PsicovIO.py conkit/io/StockholmIO.py conkit/io/_ParserIO.py conkit/io/__init__.py conkit/io/_iotools.py scripts/conkit.convert scripts/conkit.msatool scripts/conkit.plot_map scripts/conkit.precision scripts/conkit.predict