# Purpose: generate default patches
# Input  : MODEL (after GENERATE_MODEL)
# Output : patched MODEL

# Derive the presence of disulfides from template structures
# (you can still define the additional disulfide in the
#  special_patches TOP routine)

SUBROUTINE ROUTINE = 'default_patches'
  READ_ALIGNMENT FILE = ALNFILE, ALIGN_CODES = KNOWNS SEQUENCE
  PATCH_SS_TEMPLATES
  RETURN
END_SUBROUTINE