# Purpose : calculate model(s) from the sequence and related structure(s)
#
# Input 1 : SEGFILE, ALNFILE, KNOWNS, SEQUENCE, DATABASE_DIRECTORY,
#           DEVIATION, TOPLIB, PARLIB, GENERATE_METHOD, RAND_METHOD, 
#           MD_LEVEL
#
# Output : alignment in file ALNFILE, stereochemical and homology restraints 
#          in file CSRFILE,
#          schedule in file SCHFILE, final model in file FINAL_MODEL,
#          debugging output in .D
#          MODEL, CSRFILE, SCHFILE, FINAL_MODEL, REFINED_MODEL
#


SUBROUTINE ROUTINE = 'full_homol'

  # get some filenames from SEQUENCE:
  CALL ROUTINE = 'getnames'
  STRING_OPERATE STRING_ARGUMENTS = SEGFILE '.ali',  RESULT = ALNFILE

  # derive the alignment first:
  CALL ROUTINE = 'align_strs_seq'

  # getting model(s):
  CALL ROUTINE = 'model'

RETURN
END_SUBROUTINE