#!/bin/sh
# Run scripts with Python (and modpy.sh if needed) if possible, rather
# than the modXXX script (which only works correctly if Python 2.3 is installed)
modpy="../../bin/modpy.sh"
# If modpy.sh doesn't exist, assume we have Python set up correctly already
# (e.g. Mac or RPM install, or PYTHONPATH and LD_LIBRARY_PATH set):
if test "${PYTHON}x" != "x"; then
  pyint="${PYTHON}"
else
  pyint="python"
fi
if test ! -f ${modpy}; then
  modpy="${pyint}"
else
  modpy="${modpy} ${pyint}"
fi
# Only use Modeller through Python if 1) an import succeeds, 2) the 'modeller'
# module imported is really Modeller (not a spurious modeller.py in the path
# somewhere) and 3) the version matches that these examples were built with
run_version=`${modpy} - 2>/dev/null <<END
import sys
from modeller import *
v = info.version_info
if isinstance(v, tuple):
    v = ".".join([str(i) for i in v])
sys.stdout.write(v + '\n')
END
`
build_version="9.17"

run_script() {
  pyscript="$1.py"
  if test "${run_version}" = "${build_version}"; then
    log="$1.log"
    cmd="${modpy} ${pyscript} > ${log}"
  else
    cmd="mod9.17 ${pyscript}"
  fi
  echo "$cmd"
  eval "$cmd"
}

run_script add_restraint
run_script align2d
run_script align3d
run_script align_consensus
run_script align
run_script all_hydrogen
run_script build_model
run_script build_profile
run_script color_aln_model
run_script compare_alignments
run_script define_symmetry
run_script describe
run_script edit_alignment
run_script expand_alignment
run_script id_table
run_script iupac_model
run_script make_chains
run_script make_region
run_script make_restraints
run_script make_schedule
run_script make_topology_model
run_script malign3d
run_script malign
run_script mutate_selection
run_script orient_model
run_script patch_disulfides
run_script patch
run_script pick_atoms
run_script pick_hot_atoms
run_script pick_restraints
run_script randomize_xyz
run_script read_alignment
run_script group_restraints
run_script read_model
run_script read_sequence_db
run_script reindex_restraints
run_script convert_sequence_db
run_script rename_segments
run_script reorder_atoms
run_script rotate_dihedrals
run_script rotate_model
run_script secondary_structure
run_script segment_matching
run_script seqfilter
run_script join_chains
run_script superpose
run_script swap_atoms_in_res
run_script transfer_res_numb
run_script transfer_xyz
run_script write_data
run_script write_pdb_xref
run_script em_grid_search
run_script aln_to_prof
run_script read_profile
run_script ppscan
run_script make_pssmdb
run_script build_sequence
run_script aln_append_model
run_script alignment_read_one