#!/bin/sh
#
# Simple script for subnitting ccp4i jobs to Condor batch system
# This is a hack to replicate what happens for SGE and PBS. It
# requires that this file be somewhere in the users PATH.
#
# Ronan Keegan 05/03/2009 
#

# Takes the ccp4i job com file as input
infile=$1

# Get the def file location, name and the job number
#def_file=`grep \.def $infile | gawk '{print $3}'`
def_file_line=`grep \.def $infile`
def_file=${def_file_line##*-r}
def_file_name=${def_file##*/}
job_number_name=${def_file_name%.*}

# Get the project name from the def file
project_line=`grep CCP4I $def_file | grep PROJECT `
project=${project_line##* }

# Create the condor submission script
cat << eof > ${CCP4_SCR}/${job_number_name}_${project}_condor.sub
Universe       = vanilla

Executable     = ${CCP4I_TOP}/bin/ccp4ish 
arguments = -r ${def_file}
getenv  = true
output  = ${CCP4_SCR}/${job_number_name}_${project}_condor.out
error   = ${CCP4_SCR}/${job_number_name}_${project}_condor.error

Queue
eof

# Submit the job to the Condor queue
condor_submit ${CCP4_SCR}/${job_number_name}_${project}_condor.sub