# This file was automatically generated by SWIG (http://www.swig.org). # Version 1.3.40 # # Do not make changes to this file unless you know what you are doing--modify # the SWIG interface file instead. # This file is compatible with both classic and new-style classes. from sys import version_info if version_info >= (2,6,0): def swig_import_helper(): from os.path import dirname import imp fp = None try: fp, pathname, description = imp.find_module('_coot', [dirname(__file__)]) except ImportError: import _coot return _coot if fp is not None: try: _mod = imp.load_module('_coot', fp, pathname, description) finally: fp.close() return _mod _coot = swig_import_helper() del swig_import_helper else: import _coot del version_info try: _swig_property = property except NameError: pass # Python < 2.2 doesn't have 'property'. def _swig_setattr_nondynamic(self,class_type,name,value,static=1): if (name == "thisown"): return self.this.own(value) if (name == "this"): if type(value).__name__ == 'SwigPyObject': self.__dict__[name] = value return method = class_type.__swig_setmethods__.get(name,None) if method: return method(self,value) if (not static) or hasattr(self,name): self.__dict__[name] = value else: raise AttributeError("You cannot add attributes to %s" % self) def _swig_setattr(self,class_type,name,value): return _swig_setattr_nondynamic(self,class_type,name,value,0) def _swig_getattr(self,class_type,name): if (name == "thisown"): return self.this.own() method = class_type.__swig_getmethods__.get(name,None) if method: return method(self) raise AttributeError(name) def _swig_repr(self): try: strthis = "proxy of " + self.this.__repr__() except: strthis = "" return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,) try: _object = object _newclass = 1 except AttributeError: class _object : pass _newclass = 0 class SwigPyIterator(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, SwigPyIterator, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, SwigPyIterator, name) def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined - class is abstract") __repr__ = _swig_repr __swig_destroy__ = _coot.delete_SwigPyIterator __del__ = lambda self : None; def value(self): return _coot.SwigPyIterator_value(self) def incr(self, n = 1): return _coot.SwigPyIterator_incr(self, n) def decr(self, n = 1): return _coot.SwigPyIterator_decr(self, n) def distance(self, *args): return _coot.SwigPyIterator_distance(self, *args) def equal(self, *args): return _coot.SwigPyIterator_equal(self, *args) def copy(self): return _coot.SwigPyIterator_copy(self) def next(self): return _coot.SwigPyIterator_next(self) def __next__(self): return _coot.SwigPyIterator___next__(self) def previous(self): return _coot.SwigPyIterator_previous(self) def advance(self, *args): return _coot.SwigPyIterator_advance(self, *args) def __eq__(self, *args): return _coot.SwigPyIterator___eq__(self, *args) def __ne__(self, *args): return _coot.SwigPyIterator___ne__(self, *args) def __iadd__(self, *args): return _coot.SwigPyIterator___iadd__(self, *args) def __isub__(self, *args): return _coot.SwigPyIterator___isub__(self, *args) def __add__(self, *args): return _coot.SwigPyIterator___add__(self, *args) def __sub__(self, *args): return _coot.SwigPyIterator___sub__(self, *args) def __iter__(self): return self SwigPyIterator_swigregister = _coot.SwigPyIterator_swigregister SwigPyIterator_swigregister(SwigPyIterator) class vector_string(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, vector_string, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, vector_string, name) __repr__ = _swig_repr def iterator(self): return _coot.vector_string_iterator(self) def __iter__(self): return self.iterator() def __nonzero__(self): return _coot.vector_string___nonzero__(self) def __bool__(self): return _coot.vector_string___bool__(self) def __len__(self): return _coot.vector_string___len__(self) def pop(self): return _coot.vector_string_pop(self) def __getslice__(self, *args): return _coot.vector_string___getslice__(self, *args) def __setslice__(self, *args): return _coot.vector_string___setslice__(self, *args) def __delslice__(self, *args): return _coot.vector_string___delslice__(self, *args) def __delitem__(self, *args): return _coot.vector_string___delitem__(self, *args) def __getitem__(self, *args): return _coot.vector_string___getitem__(self, *args) def __setitem__(self, *args): return _coot.vector_string___setitem__(self, *args) def append(self, *args): return _coot.vector_string_append(self, *args) def empty(self): return _coot.vector_string_empty(self) def size(self): return _coot.vector_string_size(self) def clear(self): return _coot.vector_string_clear(self) def swap(self, *args): return _coot.vector_string_swap(self, *args) def get_allocator(self): return _coot.vector_string_get_allocator(self) def begin(self): return _coot.vector_string_begin(self) def end(self): return _coot.vector_string_end(self) def rbegin(self): return _coot.vector_string_rbegin(self) def rend(self): return _coot.vector_string_rend(self) def pop_back(self): return _coot.vector_string_pop_back(self) def erase(self, *args): return _coot.vector_string_erase(self, *args) def __init__(self, *args): this = _coot.new_vector_string(*args) try: self.this.append(this) except: self.this = this def push_back(self, *args): return _coot.vector_string_push_back(self, *args) def front(self): return _coot.vector_string_front(self) def back(self): return _coot.vector_string_back(self) def assign(self, *args): return _coot.vector_string_assign(self, *args) def resize(self, *args): return _coot.vector_string_resize(self, *args) def insert(self, *args): return _coot.vector_string_insert(self, *args) def reserve(self, *args): return _coot.vector_string_reserve(self, *args) def capacity(self): return _coot.vector_string_capacity(self) __swig_destroy__ = _coot.delete_vector_string __del__ = lambda self : None; vector_string_swigregister = _coot.vector_string_swigregister vector_string_swigregister(vector_string) class pairbf(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, pairbf, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, pairbf, name) __repr__ = _swig_repr def __init__(self, *args): this = _coot.new_pairbf(*args) try: self.this.append(this) except: self.this = this __swig_setmethods__["first"] = _coot.pairbf_first_set __swig_getmethods__["first"] = _coot.pairbf_first_get if _newclass:first = _swig_property(_coot.pairbf_first_get, _coot.pairbf_first_set) __swig_setmethods__["second"] = _coot.pairbf_second_set __swig_getmethods__["second"] = _coot.pairbf_second_get if _newclass:second = _swig_property(_coot.pairbf_second_get, _coot.pairbf_second_set) def __len__(self): return 2 def __repr__(self): return str((self.first, self.second)) def __getitem__(self, index): if not (index % 2): return self.first else: return self.second def __setitem__(self, index, val): if not (index % 2): self.first = val else: self.second = val __swig_destroy__ = _coot.delete_pairbf __del__ = lambda self : None; pairbf_swigregister = _coot.pairbf_swigregister pairbf_swigregister(pairbf) class IntVector(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, IntVector, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, IntVector, name) __repr__ = _swig_repr def iterator(self): return _coot.IntVector_iterator(self) def __iter__(self): return self.iterator() def __nonzero__(self): return _coot.IntVector___nonzero__(self) def __bool__(self): return _coot.IntVector___bool__(self) def __len__(self): return _coot.IntVector___len__(self) def pop(self): return _coot.IntVector_pop(self) def __getslice__(self, *args): return _coot.IntVector___getslice__(self, *args) def __setslice__(self, *args): return _coot.IntVector___setslice__(self, *args) def __delslice__(self, *args): return _coot.IntVector___delslice__(self, *args) def __delitem__(self, *args): return _coot.IntVector___delitem__(self, *args) def __getitem__(self, *args): return _coot.IntVector___getitem__(self, *args) def __setitem__(self, *args): return _coot.IntVector___setitem__(self, *args) def append(self, *args): return _coot.IntVector_append(self, *args) def empty(self): return _coot.IntVector_empty(self) def size(self): return _coot.IntVector_size(self) def clear(self): return _coot.IntVector_clear(self) def swap(self, *args): return _coot.IntVector_swap(self, *args) def get_allocator(self): return _coot.IntVector_get_allocator(self) def begin(self): return _coot.IntVector_begin(self) def end(self): return _coot.IntVector_end(self) def rbegin(self): return _coot.IntVector_rbegin(self) def rend(self): return _coot.IntVector_rend(self) def pop_back(self): return _coot.IntVector_pop_back(self) def erase(self, *args): return _coot.IntVector_erase(self, *args) def __init__(self, *args): this = _coot.new_IntVector(*args) try: self.this.append(this) except: self.this = this def push_back(self, *args): return _coot.IntVector_push_back(self, *args) def front(self): return _coot.IntVector_front(self) def back(self): return _coot.IntVector_back(self) def assign(self, *args): return _coot.IntVector_assign(self, *args) def resize(self, *args): return _coot.IntVector_resize(self, *args) def insert(self, *args): return _coot.IntVector_insert(self, *args) def reserve(self, *args): return _coot.IntVector_reserve(self, *args) def capacity(self): return _coot.IntVector_capacity(self) __swig_destroy__ = _coot.delete_IntVector __del__ = lambda self : None; IntVector_swigregister = _coot.IntVector_swigregister IntVector_swigregister(IntVector) class vector_atom_spec(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, vector_atom_spec, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, vector_atom_spec, name) __repr__ = _swig_repr def iterator(self): return _coot.vector_atom_spec_iterator(self) def __iter__(self): return self.iterator() def __nonzero__(self): return _coot.vector_atom_spec___nonzero__(self) def __bool__(self): return _coot.vector_atom_spec___bool__(self) def __len__(self): return _coot.vector_atom_spec___len__(self) def pop(self): return _coot.vector_atom_spec_pop(self) def __getslice__(self, *args): return _coot.vector_atom_spec___getslice__(self, *args) def __setslice__(self, *args): return _coot.vector_atom_spec___setslice__(self, *args) def __delslice__(self, *args): return _coot.vector_atom_spec___delslice__(self, *args) def __delitem__(self, *args): return _coot.vector_atom_spec___delitem__(self, *args) def __getitem__(self, *args): return _coot.vector_atom_spec___getitem__(self, *args) def __setitem__(self, *args): return _coot.vector_atom_spec___setitem__(self, *args) def append(self, *args): return _coot.vector_atom_spec_append(self, *args) def empty(self): return _coot.vector_atom_spec_empty(self) def size(self): return _coot.vector_atom_spec_size(self) def clear(self): return _coot.vector_atom_spec_clear(self) def swap(self, *args): return _coot.vector_atom_spec_swap(self, *args) def get_allocator(self): return _coot.vector_atom_spec_get_allocator(self) def begin(self): return _coot.vector_atom_spec_begin(self) def end(self): return _coot.vector_atom_spec_end(self) def rbegin(self): return _coot.vector_atom_spec_rbegin(self) def rend(self): return _coot.vector_atom_spec_rend(self) def pop_back(self): return _coot.vector_atom_spec_pop_back(self) def erase(self, *args): return _coot.vector_atom_spec_erase(self, *args) def __init__(self, *args): this = _coot.new_vector_atom_spec(*args) try: self.this.append(this) except: self.this = this def push_back(self, *args): return _coot.vector_atom_spec_push_back(self, *args) def front(self): return _coot.vector_atom_spec_front(self) def back(self): return _coot.vector_atom_spec_back(self) def assign(self, *args): return _coot.vector_atom_spec_assign(self, *args) def resize(self, *args): return _coot.vector_atom_spec_resize(self, *args) def insert(self, *args): return _coot.vector_atom_spec_insert(self, *args) def reserve(self, *args): return _coot.vector_atom_spec_reserve(self, *args) def capacity(self): return _coot.vector_atom_spec_capacity(self) __swig_destroy__ = _coot.delete_vector_atom_spec __del__ = lambda self : None; vector_atom_spec_swigregister = _coot.vector_atom_spec_swigregister vector_atom_spec_swigregister(vector_atom_spec) class vector_mtz_type_label(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, vector_mtz_type_label, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, vector_mtz_type_label, name) __repr__ = _swig_repr def iterator(self): return _coot.vector_mtz_type_label_iterator(self) def __iter__(self): return self.iterator() def __nonzero__(self): return _coot.vector_mtz_type_label___nonzero__(self) def __bool__(self): return _coot.vector_mtz_type_label___bool__(self) def __len__(self): return _coot.vector_mtz_type_label___len__(self) def pop(self): return _coot.vector_mtz_type_label_pop(self) def __getslice__(self, *args): return _coot.vector_mtz_type_label___getslice__(self, *args) def __setslice__(self, *args): return _coot.vector_mtz_type_label___setslice__(self, *args) def __delslice__(self, *args): return _coot.vector_mtz_type_label___delslice__(self, *args) def __delitem__(self, *args): return _coot.vector_mtz_type_label___delitem__(self, *args) def __getitem__(self, *args): return _coot.vector_mtz_type_label___getitem__(self, *args) def __setitem__(self, *args): return _coot.vector_mtz_type_label___setitem__(self, *args) def append(self, *args): return _coot.vector_mtz_type_label_append(self, *args) def empty(self): return _coot.vector_mtz_type_label_empty(self) def size(self): return _coot.vector_mtz_type_label_size(self) def clear(self): return _coot.vector_mtz_type_label_clear(self) def swap(self, *args): return _coot.vector_mtz_type_label_swap(self, *args) def get_allocator(self): return _coot.vector_mtz_type_label_get_allocator(self) def begin(self): return _coot.vector_mtz_type_label_begin(self) def end(self): return _coot.vector_mtz_type_label_end(self) def rbegin(self): return _coot.vector_mtz_type_label_rbegin(self) def rend(self): return _coot.vector_mtz_type_label_rend(self) def pop_back(self): return _coot.vector_mtz_type_label_pop_back(self) def erase(self, *args): return _coot.vector_mtz_type_label_erase(self, *args) def __init__(self, *args): this = _coot.new_vector_mtz_type_label(*args) try: self.this.append(this) except: self.this = this def push_back(self, *args): return _coot.vector_mtz_type_label_push_back(self, *args) def front(self): return _coot.vector_mtz_type_label_front(self) def back(self): return _coot.vector_mtz_type_label_back(self) def assign(self, *args): return _coot.vector_mtz_type_label_assign(self, *args) def resize(self, *args): return _coot.vector_mtz_type_label_resize(self, *args) def insert(self, *args): return _coot.vector_mtz_type_label_insert(self, *args) def reserve(self, *args): return _coot.vector_mtz_type_label_reserve(self, *args) def capacity(self): return _coot.vector_mtz_type_label_capacity(self) __swig_destroy__ = _coot.delete_vector_mtz_type_label __del__ = lambda self : None; vector_mtz_type_label_swigregister = _coot.vector_mtz_type_label_swigregister vector_mtz_type_label_swigregister(vector_mtz_type_label) COOT_SCHEME_DIR = _coot.COOT_SCHEME_DIR COOT_PYTHON_DIR = _coot.COOT_PYTHON_DIR def try_load_python_extras_dir(): return _coot.try_load_python_extras_dir() try_load_python_extras_dir = _coot.try_load_python_extras_dir def set_prefer_python(): return _coot.set_prefer_python() set_prefer_python = _coot.set_prefer_python def prefer_python(): return _coot.prefer_python() prefer_python = _coot.prefer_python def make_directory_maybe(*args): return _coot.make_directory_maybe(*args) make_directory_maybe = _coot.make_directory_maybe def set_show_paths_in_display_manager(*args): return _coot.set_show_paths_in_display_manager(*args) set_show_paths_in_display_manager = _coot.set_show_paths_in_display_manager def show_paths_in_display_manager_state(): return _coot.show_paths_in_display_manager_state() show_paths_in_display_manager_state = _coot.show_paths_in_display_manager_state def add_coordinates_glob_extension(*args): return _coot.add_coordinates_glob_extension(*args) add_coordinates_glob_extension = _coot.add_coordinates_glob_extension def add_data_glob_extension(*args): return _coot.add_data_glob_extension(*args) add_data_glob_extension = _coot.add_data_glob_extension def add_dictionary_glob_extension(*args): return _coot.add_dictionary_glob_extension(*args) add_dictionary_glob_extension = _coot.add_dictionary_glob_extension def add_map_glob_extension(*args): return _coot.add_map_glob_extension(*args) add_map_glob_extension = _coot.add_map_glob_extension def remove_coordinates_glob_extension(*args): return _coot.remove_coordinates_glob_extension(*args) remove_coordinates_glob_extension = _coot.remove_coordinates_glob_extension def remove_data_glob_extension(*args): return _coot.remove_data_glob_extension(*args) remove_data_glob_extension = _coot.remove_data_glob_extension def remove_dictionary_glob_extension(*args): return _coot.remove_dictionary_glob_extension(*args) remove_dictionary_glob_extension = _coot.remove_dictionary_glob_extension def remove_map_glob_extension(*args): return _coot.remove_map_glob_extension(*args) remove_map_glob_extension = _coot.remove_map_glob_extension def set_sticky_sort_by_date(): return _coot.set_sticky_sort_by_date() set_sticky_sort_by_date = _coot.set_sticky_sort_by_date def unset_sticky_sort_by_date(): return _coot.unset_sticky_sort_by_date() unset_sticky_sort_by_date = _coot.unset_sticky_sort_by_date def set_filter_fileselection_filenames(*args): return _coot.set_filter_fileselection_filenames(*args) set_filter_fileselection_filenames = _coot.set_filter_fileselection_filenames def filter_fileselection_filenames_state(): return _coot.filter_fileselection_filenames_state() filter_fileselection_filenames_state = _coot.filter_fileselection_filenames_state def file_type_coords(*args): return _coot.file_type_coords(*args) file_type_coords = _coot.file_type_coords def open_coords_dialog(): return _coot.open_coords_dialog() open_coords_dialog = _coot.open_coords_dialog def set_file_chooser_selector(*args): return _coot.set_file_chooser_selector(*args) set_file_chooser_selector = _coot.set_file_chooser_selector def file_chooser_selector_state(): return _coot.file_chooser_selector_state() file_chooser_selector_state = _coot.file_chooser_selector_state def set_file_chooser_overwrite(*args): return _coot.set_file_chooser_overwrite(*args) set_file_chooser_overwrite = _coot.set_file_chooser_overwrite def file_chooser_overwrite_state(): return _coot.file_chooser_overwrite_state() file_chooser_overwrite_state = _coot.file_chooser_overwrite_state def export_map_gui(*args): return _coot.export_map_gui(*args) export_map_gui = _coot.export_map_gui def set_main_window_title(*args): return _coot.set_main_window_title(*args) set_main_window_title = _coot.set_main_window_title def manage_column_selector(*args): return _coot.manage_column_selector(*args) manage_column_selector = _coot.manage_column_selector def chain_n_residues(*args): return _coot.chain_n_residues(*args) chain_n_residues = _coot.chain_n_residues def molecule_centre_internal(*args): return _coot.molecule_centre_internal(*args) molecule_centre_internal = _coot.molecule_centre_internal def seqnum_from_serial_number(*args): return _coot.seqnum_from_serial_number(*args) seqnum_from_serial_number = _coot.seqnum_from_serial_number def insertion_code_from_serial_number(*args): return _coot.insertion_code_from_serial_number(*args) insertion_code_from_serial_number = _coot.insertion_code_from_serial_number def python_representation_kk(*args): return _coot.python_representation_kk(*args) python_representation_kk = _coot.python_representation_kk def chain_id_py(*args): return _coot.chain_id_py(*args) chain_id_py = _coot.chain_id_py def n_models(*args): return _coot.n_models(*args) n_models = _coot.n_models def n_chains(*args): return _coot.n_chains(*args) n_chains = _coot.n_chains def is_solvent_chain_p(*args): return _coot.is_solvent_chain_p(*args) is_solvent_chain_p = _coot.is_solvent_chain_p def is_protein_chain_p(*args): return _coot.is_protein_chain_p(*args) is_protein_chain_p = _coot.is_protein_chain_p def is_nucleotide_chain_p(*args): return _coot.is_nucleotide_chain_p(*args) is_nucleotide_chain_p = _coot.is_nucleotide_chain_p def n_residues(*args): return _coot.n_residues(*args) n_residues = _coot.n_residues def remarks_py(*args): return _coot.remarks_py(*args) remarks_py = _coot.remarks_py def residue_centre_py(*args): return _coot.residue_centre_py(*args) residue_centre_py = _coot.residue_centre_py def sort_chains(*args): return _coot.sort_chains(*args) sort_chains = _coot.sort_chains def sort_residues(*args): return _coot.sort_residues(*args) sort_residues = _coot.sort_residues def remarks_dialog(*args): return _coot.remarks_dialog(*args) remarks_dialog = _coot.remarks_dialog def print_header_secondary_structure_info(*args): return _coot.print_header_secondary_structure_info(*args) print_header_secondary_structure_info = _coot.print_header_secondary_structure_info def write_header_secondary_structure_info(*args): return _coot.write_header_secondary_structure_info(*args) write_header_secondary_structure_info = _coot.write_header_secondary_structure_info def copy_molecule(*args): return _coot.copy_molecule(*args) copy_molecule = _coot.copy_molecule def add_ligand_delete_residue_copy_molecule(*args): return _coot.add_ligand_delete_residue_copy_molecule(*args) add_ligand_delete_residue_copy_molecule = _coot.add_ligand_delete_residue_copy_molecule def exchange_chain_ids_for_seg_ids(*args): return _coot.exchange_chain_ids_for_seg_ids(*args) exchange_chain_ids_for_seg_ids = _coot.exchange_chain_ids_for_seg_ids def show_remarks_browswer(): return _coot.show_remarks_browswer() show_remarks_browswer = _coot.show_remarks_browswer def coot_sys_build_type_py(): return _coot.coot_sys_build_type_py() coot_sys_build_type_py = _coot.coot_sys_build_type_py def git_revision_count(): return _coot.git_revision_count() git_revision_count = _coot.git_revision_count def svn_revision(): return _coot.svn_revision() svn_revision = _coot.svn_revision def molecule_name(*args): return _coot.molecule_name(*args) molecule_name = _coot.molecule_name def molecule_name_stub_py(*args): return _coot.molecule_name_stub_py(*args) molecule_name_stub_py = _coot.molecule_name_stub_py def set_molecule_name(*args): return _coot.set_molecule_name(*args) set_molecule_name = _coot.set_molecule_name def coot_checked_exit(*args): return _coot.coot_checked_exit(*args) coot_checked_exit = _coot.coot_checked_exit def coot_real_exit(*args): return _coot.coot_real_exit(*args) coot_real_exit = _coot.coot_real_exit def coot_no_state_real_exit(*args): return _coot.coot_no_state_real_exit(*args) coot_no_state_real_exit = _coot.coot_no_state_real_exit def coot_clear_backup_or_real_exit(*args): return _coot.coot_clear_backup_or_real_exit(*args) coot_clear_backup_or_real_exit = _coot.coot_clear_backup_or_real_exit def coot_save_state_and_exit(*args): return _coot.coot_save_state_and_exit(*args) coot_save_state_and_exit = _coot.coot_save_state_and_exit def run_clear_backups_py(*args): return _coot.run_clear_backups_py(*args) run_clear_backups_py = _coot.run_clear_backups_py def first_coords_imol(): return _coot.first_coords_imol() first_coords_imol = _coot.first_coords_imol def first_small_coords_imol(): return _coot.first_small_coords_imol() first_small_coords_imol = _coot.first_small_coords_imol def first_unsaved_coords_imol(): return _coot.first_unsaved_coords_imol() first_unsaved_coords_imol = _coot.first_unsaved_coords_imol def mmcif_sfs_to_mtz(*args): return _coot.mmcif_sfs_to_mtz(*args) mmcif_sfs_to_mtz = _coot.mmcif_sfs_to_mtz def set_do_anti_aliasing(*args): return _coot.set_do_anti_aliasing(*args) set_do_anti_aliasing = _coot.set_do_anti_aliasing def do_anti_aliasing_state(): return _coot.do_anti_aliasing_state() do_anti_aliasing_state = _coot.do_anti_aliasing_state def set_do_GL_lighting(*args): return _coot.set_do_GL_lighting(*args) set_do_GL_lighting = _coot.set_do_GL_lighting def do_GL_lighting_state(): return _coot.do_GL_lighting_state() do_GL_lighting_state = _coot.do_GL_lighting_state def use_graphics_interface_state(): return _coot.use_graphics_interface_state() use_graphics_interface_state = _coot.use_graphics_interface_state def python_at_prompt_at_startup_state(): return _coot.python_at_prompt_at_startup_state() python_at_prompt_at_startup_state = _coot.python_at_prompt_at_startup_state def start_graphics_interface(): return _coot.start_graphics_interface() start_graphics_interface = _coot.start_graphics_interface def reset_view(): return _coot.reset_view() reset_view = _coot.reset_view def graphics_n_molecules(): return _coot.graphics_n_molecules() graphics_n_molecules = _coot.graphics_n_molecules def molecule_has_hydrogens_raw(*args): return _coot.molecule_has_hydrogens_raw(*args) molecule_has_hydrogens_raw = _coot.molecule_has_hydrogens_raw def own_molecule_number(*args): return _coot.own_molecule_number(*args) own_molecule_number = _coot.own_molecule_number def toggle_idle_spin_function(): return _coot.toggle_idle_spin_function() toggle_idle_spin_function = _coot.toggle_idle_spin_function def toggle_idle_rock_function(): return _coot.toggle_idle_rock_function() toggle_idle_rock_function = _coot.toggle_idle_rock_function def get_idle_function_rock_target_angle(): return _coot.get_idle_function_rock_target_angle() get_idle_function_rock_target_angle = _coot.get_idle_function_rock_target_angle def set_rocking_factors(*args): return _coot.set_rocking_factors(*args) set_rocking_factors = _coot.set_rocking_factors def set_idle_function_rotate_angle(*args): return _coot.set_idle_function_rotate_angle(*args) set_idle_function_rotate_angle = _coot.set_idle_function_rotate_angle def idle_function_rotate_angle(): return _coot.idle_function_rotate_angle() idle_function_rotate_angle = _coot.idle_function_rotate_angle def handle_read_draw_molecule(*args): return _coot.handle_read_draw_molecule(*args) handle_read_draw_molecule = _coot.handle_read_draw_molecule def allow_duplicate_sequence_numbers(): return _coot.allow_duplicate_sequence_numbers() allow_duplicate_sequence_numbers = _coot.allow_duplicate_sequence_numbers def set_convert_to_v2_atom_names(*args): return _coot.set_convert_to_v2_atom_names(*args) set_convert_to_v2_atom_names = _coot.set_convert_to_v2_atom_names def handle_read_draw_molecule_with_recentre(*args): return _coot.handle_read_draw_molecule_with_recentre(*args) handle_read_draw_molecule_with_recentre = _coot.handle_read_draw_molecule_with_recentre def handle_read_draw_molecule_and_move_molecule_here(*args): return _coot.handle_read_draw_molecule_and_move_molecule_here(*args) handle_read_draw_molecule_and_move_molecule_here = _coot.handle_read_draw_molecule_and_move_molecule_here def read_pdb(*args): return _coot.read_pdb(*args) read_pdb = _coot.read_pdb def assign_hetatms(*args): return _coot.assign_hetatms(*args) assign_hetatms = _coot.assign_hetatms def hetify_residue(*args): return _coot.hetify_residue(*args) hetify_residue = _coot.hetify_residue def residue_has_hetatms(*args): return _coot.residue_has_hetatms(*args) residue_has_hetatms = _coot.residue_has_hetatms def het_group_residues_py(*args): return _coot.het_group_residues_py(*args) het_group_residues_py = _coot.het_group_residues_py def het_group_n_atoms(*args): return _coot.het_group_n_atoms(*args) het_group_n_atoms = _coot.het_group_n_atoms def replace_fragment(*args): return _coot.replace_fragment(*args) replace_fragment = _coot.replace_fragment def copy_residue_range(*args): return _coot.copy_residue_range(*args) copy_residue_range = _coot.copy_residue_range def clear_and_update_model_molecule_from_file(*args): return _coot.clear_and_update_model_molecule_from_file(*args) clear_and_update_model_molecule_from_file = _coot.clear_and_update_model_molecule_from_file def screendump_image(*args): return _coot.screendump_image(*args) screendump_image = _coot.screendump_image def check_for_dark_blue_density(): return _coot.check_for_dark_blue_density() check_for_dark_blue_density = _coot.check_for_dark_blue_density def set_draw_solid_density_surface(*args): return _coot.set_draw_solid_density_surface(*args) set_draw_solid_density_surface = _coot.set_draw_solid_density_surface def set_draw_map_standard_lines(*args): return _coot.set_draw_map_standard_lines(*args) set_draw_map_standard_lines = _coot.set_draw_map_standard_lines def solid_surface(*args): return _coot.solid_surface(*args) solid_surface = _coot.solid_surface def set_solid_density_surface_opacity(*args): return _coot.set_solid_density_surface_opacity(*args) set_solid_density_surface_opacity = _coot.set_solid_density_surface_opacity def set_flat_shading_for_solid_density_surface(*args): return _coot.set_flat_shading_for_solid_density_surface(*args) set_flat_shading_for_solid_density_surface = _coot.set_flat_shading_for_solid_density_surface def test_internal_py(): return _coot.test_internal_py() test_internal_py = _coot.test_internal_py def test_internal_single_py(): return _coot.test_internal_single_py() test_internal_single_py = _coot.test_internal_single_py def set_scroll_by_wheel_mouse(*args): return _coot.set_scroll_by_wheel_mouse(*args) set_scroll_by_wheel_mouse = _coot.set_scroll_by_wheel_mouse def scroll_by_wheel_mouse_state(): return _coot.scroll_by_wheel_mouse_state() scroll_by_wheel_mouse_state = _coot.scroll_by_wheel_mouse_state def set_default_initial_contour_level_for_map(*args): return _coot.set_default_initial_contour_level_for_map(*args) set_default_initial_contour_level_for_map = _coot.set_default_initial_contour_level_for_map def set_default_initial_contour_level_for_difference_map(*args): return _coot.set_default_initial_contour_level_for_difference_map(*args) set_default_initial_contour_level_for_difference_map = _coot.set_default_initial_contour_level_for_difference_map def print_view_matrix(): return _coot.print_view_matrix() print_view_matrix = _coot.print_view_matrix def get_view_matrix_element(*args): return _coot.get_view_matrix_element(*args) get_view_matrix_element = _coot.get_view_matrix_element def get_view_quaternion_internal(*args): return _coot.get_view_quaternion_internal(*args) get_view_quaternion_internal = _coot.get_view_quaternion_internal def set_view_quaternion(*args): return _coot.set_view_quaternion(*args) set_view_quaternion = _coot.set_view_quaternion def apply_ncs_to_view_orientation(*args): return _coot.apply_ncs_to_view_orientation(*args) apply_ncs_to_view_orientation = _coot.apply_ncs_to_view_orientation def apply_ncs_to_view_orientation_and_screen_centre(*args): return _coot.apply_ncs_to_view_orientation_and_screen_centre(*args) apply_ncs_to_view_orientation_and_screen_centre = _coot.apply_ncs_to_view_orientation_and_screen_centre def set_fps_flag(*args): return _coot.set_fps_flag(*args) set_fps_flag = _coot.set_fps_flag def get_fps_flag(): return _coot.get_fps_flag() get_fps_flag = _coot.get_fps_flag def set_show_origin_marker(*args): return _coot.set_show_origin_marker(*args) set_show_origin_marker = _coot.set_show_origin_marker def show_origin_marker_state(): return _coot.show_origin_marker_state() show_origin_marker_state = _coot.show_origin_marker_state def hide_modelling_toolbar(): return _coot.hide_modelling_toolbar() hide_modelling_toolbar = _coot.hide_modelling_toolbar def show_modelling_toolbar(): return _coot.show_modelling_toolbar() show_modelling_toolbar = _coot.show_modelling_toolbar def hide_main_toolbar(): return _coot.hide_main_toolbar() hide_main_toolbar = _coot.hide_main_toolbar def show_main_toolbar(): return _coot.show_main_toolbar() show_main_toolbar = _coot.show_main_toolbar def show_model_toolbar_all_icons(): return _coot.show_model_toolbar_all_icons() show_model_toolbar_all_icons = _coot.show_model_toolbar_all_icons def show_model_toolbar_main_icons(): return _coot.show_model_toolbar_main_icons() show_model_toolbar_main_icons = _coot.show_model_toolbar_main_icons def reattach_modelling_toolbar(): return _coot.reattach_modelling_toolbar() reattach_modelling_toolbar = _coot.reattach_modelling_toolbar def set_model_toolbar_docked_position(*args): return _coot.set_model_toolbar_docked_position(*args) set_model_toolbar_docked_position = _coot.set_model_toolbar_docked_position def suck_model_fit_dialog(): return _coot.suck_model_fit_dialog() suck_model_fit_dialog = _coot.suck_model_fit_dialog def suck_model_fit_dialog_bl(): return _coot.suck_model_fit_dialog_bl() suck_model_fit_dialog_bl = _coot.suck_model_fit_dialog_bl def add_status_bar_text(*args): return _coot.add_status_bar_text(*args) add_status_bar_text = _coot.add_status_bar_text def set_model_fit_refine_dialog_stays_on_top(*args): return _coot.set_model_fit_refine_dialog_stays_on_top(*args) set_model_fit_refine_dialog_stays_on_top = _coot.set_model_fit_refine_dialog_stays_on_top def model_fit_refine_dialog_stays_on_top_state(): return _coot.model_fit_refine_dialog_stays_on_top_state() model_fit_refine_dialog_stays_on_top_state = _coot.model_fit_refine_dialog_stays_on_top_state def set_accept_reject_dialog_docked(*args): return _coot.set_accept_reject_dialog_docked(*args) set_accept_reject_dialog_docked = _coot.set_accept_reject_dialog_docked def accept_reject_dialog_docked_state(): return _coot.accept_reject_dialog_docked_state() accept_reject_dialog_docked_state = _coot.accept_reject_dialog_docked_state def set_accept_reject_dialog_docked_show(*args): return _coot.set_accept_reject_dialog_docked_show(*args) set_accept_reject_dialog_docked_show = _coot.set_accept_reject_dialog_docked_show def accept_reject_dialog_docked_show_state(): return _coot.accept_reject_dialog_docked_show_state() accept_reject_dialog_docked_show_state = _coot.accept_reject_dialog_docked_show_state def set_model_toolbar_style(*args): return _coot.set_model_toolbar_style(*args) set_model_toolbar_style = _coot.set_model_toolbar_style def model_toolbar_style_state(): return _coot.model_toolbar_style_state() model_toolbar_style_state = _coot.model_toolbar_style_state def set_main_toolbar_style(*args): return _coot.set_main_toolbar_style(*args) set_main_toolbar_style = _coot.set_main_toolbar_style def main_toolbar_style_state(): return _coot.main_toolbar_style_state() main_toolbar_style_state = _coot.main_toolbar_style_state def quanta_buttons(): return _coot.quanta_buttons() quanta_buttons = _coot.quanta_buttons def quanta_like_zoom(): return _coot.quanta_like_zoom() quanta_like_zoom = _coot.quanta_like_zoom def set_control_key_for_rotate(*args): return _coot.set_control_key_for_rotate(*args) set_control_key_for_rotate = _coot.set_control_key_for_rotate def control_key_for_rotate_state(): return _coot.control_key_for_rotate_state() control_key_for_rotate_state = _coot.control_key_for_rotate_state def blob_under_pointer_to_screen_centre(): return _coot.blob_under_pointer_to_screen_centre() blob_under_pointer_to_screen_centre = _coot.blob_under_pointer_to_screen_centre def normal_cursor(): return _coot.normal_cursor() normal_cursor = _coot.normal_cursor def fleur_cursor(): return _coot.fleur_cursor() fleur_cursor = _coot.fleur_cursor def pick_cursor_maybe(): return _coot.pick_cursor_maybe() pick_cursor_maybe = _coot.pick_cursor_maybe def rotate_cursor(): return _coot.rotate_cursor() rotate_cursor = _coot.rotate_cursor def set_pick_cursor_index(*args): return _coot.set_pick_cursor_index(*args) set_pick_cursor_index = _coot.set_pick_cursor_index def post_model_fit_refine_dialog(): return _coot.post_model_fit_refine_dialog() post_model_fit_refine_dialog = _coot.post_model_fit_refine_dialog def unset_model_fit_refine_dialog(): return _coot.unset_model_fit_refine_dialog() unset_model_fit_refine_dialog = _coot.unset_model_fit_refine_dialog def unset_refine_params_dialog(): return _coot.unset_refine_params_dialog() unset_refine_params_dialog = _coot.unset_refine_params_dialog def show_select_map_dialog(): return _coot.show_select_map_dialog() show_select_map_dialog = _coot.show_select_map_dialog def set_model_fit_refine_rotate_translate_zone_label(*args): return _coot.set_model_fit_refine_rotate_translate_zone_label(*args) set_model_fit_refine_rotate_translate_zone_label = _coot.set_model_fit_refine_rotate_translate_zone_label def set_model_fit_refine_place_atom_at_pointer_label(*args): return _coot.set_model_fit_refine_place_atom_at_pointer_label(*args) set_model_fit_refine_place_atom_at_pointer_label = _coot.set_model_fit_refine_place_atom_at_pointer_label def post_other_modelling_tools_dialog(): return _coot.post_other_modelling_tools_dialog() post_other_modelling_tools_dialog = _coot.post_other_modelling_tools_dialog def set_refinement_move_atoms_with_zero_occupancy(*args): return _coot.set_refinement_move_atoms_with_zero_occupancy(*args) set_refinement_move_atoms_with_zero_occupancy = _coot.set_refinement_move_atoms_with_zero_occupancy def refinement_move_atoms_with_zero_occupancy_state(): return _coot.refinement_move_atoms_with_zero_occupancy_state() refinement_move_atoms_with_zero_occupancy_state = _coot.refinement_move_atoms_with_zero_occupancy_state def make_backup(*args): return _coot.make_backup(*args) make_backup = _coot.make_backup def turn_off_backup(*args): return _coot.turn_off_backup(*args) turn_off_backup = _coot.turn_off_backup def turn_on_backup(*args): return _coot.turn_on_backup(*args) turn_on_backup = _coot.turn_on_backup def backup_state(*args): return _coot.backup_state(*args) backup_state = _coot.backup_state def apply_undo(): return _coot.apply_undo() apply_undo = _coot.apply_undo def apply_redo(): return _coot.apply_redo() apply_redo = _coot.apply_redo def set_have_unsaved_changes(*args): return _coot.set_have_unsaved_changes(*args) set_have_unsaved_changes = _coot.set_have_unsaved_changes def have_unsaved_changes_p(*args): return _coot.have_unsaved_changes_p(*args) have_unsaved_changes_p = _coot.have_unsaved_changes_p def set_undo_molecule(*args): return _coot.set_undo_molecule(*args) set_undo_molecule = _coot.set_undo_molecule def show_set_undo_molecule_chooser(): return _coot.show_set_undo_molecule_chooser() show_set_undo_molecule_chooser = _coot.show_set_undo_molecule_chooser def set_unpathed_backup_file_names(*args): return _coot.set_unpathed_backup_file_names(*args) set_unpathed_backup_file_names = _coot.set_unpathed_backup_file_names def unpathed_backup_file_names_state(): return _coot.unpathed_backup_file_names_state() unpathed_backup_file_names_state = _coot.unpathed_backup_file_names_state def backup_compress_files_state(): return _coot.backup_compress_files_state() backup_compress_files_state = _coot.backup_compress_files_state def set_backup_compress_files(*args): return _coot.set_backup_compress_files(*args) set_backup_compress_files = _coot.set_backup_compress_files def recover_session(): return _coot.recover_session() recover_session = _coot.recover_session def calc_phases_generic(*args): return _coot.calc_phases_generic(*args) calc_phases_generic = _coot.calc_phases_generic def map_from_mtz_by_refmac_calc_phases(*args): return _coot.map_from_mtz_by_refmac_calc_phases(*args) map_from_mtz_by_refmac_calc_phases = _coot.map_from_mtz_by_refmac_calc_phases def map_from_mtz_by_calc_phases(*args): return _coot.map_from_mtz_by_calc_phases(*args) map_from_mtz_by_calc_phases = _coot.map_from_mtz_by_calc_phases def get_map_colour(*args): return _coot.get_map_colour(*args) get_map_colour = _coot.get_map_colour def get_map_colour_py(*args): return _coot.get_map_colour_py(*args) get_map_colour_py = _coot.get_map_colour_py def set_scroll_wheel_map(*args): return _coot.set_scroll_wheel_map(*args) set_scroll_wheel_map = _coot.set_scroll_wheel_map def set_scrollable_map(*args): return _coot.set_scrollable_map(*args) set_scrollable_map = _coot.set_scrollable_map def scroll_wheel_map(): return _coot.scroll_wheel_map() scroll_wheel_map = _coot.scroll_wheel_map def save_previous_map_colour(*args): return _coot.save_previous_map_colour(*args) save_previous_map_colour = _coot.save_previous_map_colour def restore_previous_map_colour(*args): return _coot.restore_previous_map_colour(*args) restore_previous_map_colour = _coot.restore_previous_map_colour def set_active_map_drag_flag(*args): return _coot.set_active_map_drag_flag(*args) set_active_map_drag_flag = _coot.set_active_map_drag_flag def get_active_map_drag_flag(): return _coot.get_active_map_drag_flag() get_active_map_drag_flag = _coot.get_active_map_drag_flag def set_last_map_colour(*args): return _coot.set_last_map_colour(*args) set_last_map_colour = _coot.set_last_map_colour def set_map_colour(*args): return _coot.set_map_colour(*args) set_map_colour = _coot.set_map_colour def set_contour_level_absolute(*args): return _coot.set_contour_level_absolute(*args) set_contour_level_absolute = _coot.set_contour_level_absolute def set_contour_level_in_sigma(*args): return _coot.set_contour_level_in_sigma(*args) set_contour_level_in_sigma = _coot.set_contour_level_in_sigma def get_contour_level_absolute(*args): return _coot.get_contour_level_absolute(*args) get_contour_level_absolute = _coot.get_contour_level_absolute def get_contour_level_in_sigma(*args): return _coot.get_contour_level_in_sigma(*args) get_contour_level_in_sigma = _coot.get_contour_level_in_sigma def set_last_map_sigma_step(*args): return _coot.set_last_map_sigma_step(*args) set_last_map_sigma_step = _coot.set_last_map_sigma_step def set_contour_by_sigma_step_by_mol(*args): return _coot.set_contour_by_sigma_step_by_mol(*args) set_contour_by_sigma_step_by_mol = _coot.set_contour_by_sigma_step_by_mol def data_resolution(*args): return _coot.data_resolution(*args) data_resolution = _coot.data_resolution def model_resolution(*args): return _coot.model_resolution(*args) model_resolution = _coot.model_resolution def export_map(*args): return _coot.export_map(*args) export_map = _coot.export_map def export_map_fragment(*args): return _coot.export_map_fragment(*args) export_map_fragment = _coot.export_map_fragment def export_map_fragment_with_text_radius(*args): return _coot.export_map_fragment_with_text_radius(*args) export_map_fragment_with_text_radius = _coot.export_map_fragment_with_text_radius def export_map_fragment_with_origin_shift(*args): return _coot.export_map_fragment_with_origin_shift(*args) export_map_fragment_with_origin_shift = _coot.export_map_fragment_with_origin_shift def transform_map_raw(*args): return _coot.transform_map_raw(*args) transform_map_raw = _coot.transform_map_raw def difference_map(*args): return _coot.difference_map(*args) difference_map = _coot.difference_map def reinterp_map(*args): return _coot.reinterp_map(*args) reinterp_map = _coot.reinterp_map def smooth_map(*args): return _coot.smooth_map(*args) smooth_map = _coot.smooth_map def average_map_py(*args): return _coot.average_map_py(*args) average_map_py = _coot.average_map_py def get_text_for_iso_level_increment_entry(*args): return _coot.get_text_for_iso_level_increment_entry(*args) get_text_for_iso_level_increment_entry = _coot.get_text_for_iso_level_increment_entry def get_text_for_diff_map_iso_level_increment_entry(*args): return _coot.get_text_for_diff_map_iso_level_increment_entry(*args) get_text_for_diff_map_iso_level_increment_entry = _coot.get_text_for_diff_map_iso_level_increment_entry def set_iso_level_increment(*args): return _coot.set_iso_level_increment(*args) set_iso_level_increment = _coot.set_iso_level_increment def get_iso_level_increment(): return _coot.get_iso_level_increment() get_iso_level_increment = _coot.get_iso_level_increment def set_iso_level_increment_from_text(*args): return _coot.set_iso_level_increment_from_text(*args) set_iso_level_increment_from_text = _coot.set_iso_level_increment_from_text def set_diff_map_iso_level_increment(*args): return _coot.set_diff_map_iso_level_increment(*args) set_diff_map_iso_level_increment = _coot.set_diff_map_iso_level_increment def get_diff_map_iso_level_increment(): return _coot.get_diff_map_iso_level_increment() get_diff_map_iso_level_increment = _coot.get_diff_map_iso_level_increment def set_diff_map_iso_level_increment_from_text(*args): return _coot.set_diff_map_iso_level_increment_from_text(*args) set_diff_map_iso_level_increment_from_text = _coot.set_diff_map_iso_level_increment_from_text def set_map_sampling_rate_text(*args): return _coot.set_map_sampling_rate_text(*args) set_map_sampling_rate_text = _coot.set_map_sampling_rate_text def set_map_sampling_rate(*args): return _coot.set_map_sampling_rate(*args) set_map_sampling_rate = _coot.set_map_sampling_rate def get_text_for_map_sampling_rate_text(): return _coot.get_text_for_map_sampling_rate_text() get_text_for_map_sampling_rate_text = _coot.get_text_for_map_sampling_rate_text def get_map_sampling_rate(): return _coot.get_map_sampling_rate() get_map_sampling_rate = _coot.get_map_sampling_rate def change_contour_level(*args): return _coot.change_contour_level(*args) change_contour_level = _coot.change_contour_level def set_last_map_contour_level(*args): return _coot.set_last_map_contour_level(*args) set_last_map_contour_level = _coot.set_last_map_contour_level def set_last_map_contour_level_by_sigma(*args): return _coot.set_last_map_contour_level_by_sigma(*args) set_last_map_contour_level_by_sigma = _coot.set_last_map_contour_level_by_sigma def set_stop_scroll_diff_map(*args): return _coot.set_stop_scroll_diff_map(*args) set_stop_scroll_diff_map = _coot.set_stop_scroll_diff_map def set_stop_scroll_iso_map(*args): return _coot.set_stop_scroll_iso_map(*args) set_stop_scroll_iso_map = _coot.set_stop_scroll_iso_map def set_stop_scroll_iso_map_level(*args): return _coot.set_stop_scroll_iso_map_level(*args) set_stop_scroll_iso_map_level = _coot.set_stop_scroll_iso_map_level def set_stop_scroll_diff_map_level(*args): return _coot.set_stop_scroll_diff_map_level(*args) set_stop_scroll_diff_map_level = _coot.set_stop_scroll_diff_map_level def set_residue_density_fit_scale_factor(*args): return _coot.set_residue_density_fit_scale_factor(*args) set_residue_density_fit_scale_factor = _coot.set_residue_density_fit_scale_factor def set_map_line_width(*args): return _coot.set_map_line_width(*args) set_map_line_width = _coot.set_map_line_width def map_line_width_state(): return _coot.map_line_width_state() map_line_width_state = _coot.map_line_width_state def make_and_draw_map(*args): return _coot.make_and_draw_map(*args) make_and_draw_map = _coot.make_and_draw_map def make_and_draw_map_with_refmac_params(*args): return _coot.make_and_draw_map_with_refmac_params(*args) make_and_draw_map_with_refmac_params = _coot.make_and_draw_map_with_refmac_params def make_and_draw_map_with_reso_with_refmac_params(*args): return _coot.make_and_draw_map_with_reso_with_refmac_params(*args) make_and_draw_map_with_reso_with_refmac_params = _coot.make_and_draw_map_with_reso_with_refmac_params def refmac_parameters_py(*args): return _coot.refmac_parameters_py(*args) refmac_parameters_py = _coot.refmac_parameters_py def valid_labels(*args): return _coot.valid_labels(*args) valid_labels = _coot.valid_labels def mtz_file_has_phases_p(*args): return _coot.mtz_file_has_phases_p(*args) mtz_file_has_phases_p = _coot.mtz_file_has_phases_p def is_mtz_file_p(*args): return _coot.is_mtz_file_p(*args) is_mtz_file_p = _coot.is_mtz_file_p def cns_file_has_phases_p(*args): return _coot.cns_file_has_phases_p(*args) cns_file_has_phases_p = _coot.cns_file_has_phases_p def wrapped_auto_read_make_and_draw_maps(*args): return _coot.wrapped_auto_read_make_and_draw_maps(*args) wrapped_auto_read_make_and_draw_maps = _coot.wrapped_auto_read_make_and_draw_maps def set_auto_read_do_difference_map_too(*args): return _coot.set_auto_read_do_difference_map_too(*args) set_auto_read_do_difference_map_too = _coot.set_auto_read_do_difference_map_too def auto_read_do_difference_map_too_state(): return _coot.auto_read_do_difference_map_too_state() auto_read_do_difference_map_too_state = _coot.auto_read_do_difference_map_too_state def set_auto_read_column_labels(*args): return _coot.set_auto_read_column_labels(*args) set_auto_read_column_labels = _coot.set_auto_read_column_labels def get_text_for_density_size_widget(): return _coot.get_text_for_density_size_widget() get_text_for_density_size_widget = _coot.get_text_for_density_size_widget def set_density_size_from_widget(*args): return _coot.set_density_size_from_widget(*args) set_density_size_from_widget = _coot.set_density_size_from_widget def set_map_radius(*args): return _coot.set_map_radius(*args) set_map_radius = _coot.set_map_radius def set_density_size(*args): return _coot.set_density_size(*args) set_density_size = _coot.set_density_size def set_map_radius_slider_max(*args): return _coot.set_map_radius_slider_max(*args) set_map_radius_slider_max = _coot.set_map_radius_slider_max def set_display_intro_string(*args): return _coot.set_display_intro_string(*args) set_display_intro_string = _coot.set_display_intro_string def get_map_radius(): return _coot.get_map_radius() get_map_radius = _coot.get_map_radius def set_esoteric_depth_cue(*args): return _coot.set_esoteric_depth_cue(*args) set_esoteric_depth_cue = _coot.set_esoteric_depth_cue def esoteric_depth_cue_state(): return _coot.esoteric_depth_cue_state() esoteric_depth_cue_state = _coot.esoteric_depth_cue_state def set_swap_difference_map_colours(*args): return _coot.set_swap_difference_map_colours(*args) set_swap_difference_map_colours = _coot.set_swap_difference_map_colours def swap_difference_map_colours_state(): return _coot.swap_difference_map_colours_state() swap_difference_map_colours_state = _coot.swap_difference_map_colours_state def set_map_is_difference_map(*args): return _coot.set_map_is_difference_map(*args) set_map_is_difference_map = _coot.set_map_is_difference_map def map_is_difference_map(*args): return _coot.map_is_difference_map(*args) map_is_difference_map = _coot.map_is_difference_map def another_level(): return _coot.another_level() another_level = _coot.another_level def another_level_from_map_molecule_number(*args): return _coot.another_level_from_map_molecule_number(*args) another_level_from_map_molecule_number = _coot.another_level_from_map_molecule_number def residue_density_fit_scale_factor(): return _coot.residue_density_fit_scale_factor() residue_density_fit_scale_factor = _coot.residue_density_fit_scale_factor def density_at_point(*args): return _coot.density_at_point(*args) density_at_point = _coot.density_at_point def mtz_hklin_for_map(*args): return _coot.mtz_hklin_for_map(*args) mtz_hklin_for_map = _coot.mtz_hklin_for_map def mtz_fp_for_map(*args): return _coot.mtz_fp_for_map(*args) mtz_fp_for_map = _coot.mtz_fp_for_map def mtz_phi_for_map(*args): return _coot.mtz_phi_for_map(*args) mtz_phi_for_map = _coot.mtz_phi_for_map def mtz_weight_for_map(*args): return _coot.mtz_weight_for_map(*args) mtz_weight_for_map = _coot.mtz_weight_for_map def mtz_use_weight_for_map(*args): return _coot.mtz_use_weight_for_map(*args) mtz_use_weight_for_map = _coot.mtz_use_weight_for_map def map_parameters_py(*args): return _coot.map_parameters_py(*args) map_parameters_py = _coot.map_parameters_py def cell_py(*args): return _coot.cell_py(*args) cell_py = _coot.cell_py def write_pdb_file(*args): return _coot.write_pdb_file(*args) write_pdb_file = _coot.write_pdb_file def write_residue_range_to_pdb_file(*args): return _coot.write_residue_range_to_pdb_file(*args) write_residue_range_to_pdb_file = _coot.write_residue_range_to_pdb_file def write_chain_to_pdb_file(*args): return _coot.write_chain_to_pdb_file(*args) write_chain_to_pdb_file = _coot.write_chain_to_pdb_file def quick_save(): return _coot.quick_save() quick_save = _coot.quick_save def get_write_conect_record_state(): return _coot.get_write_conect_record_state() get_write_conect_record_state = _coot.get_write_conect_record_state def set_write_conect_record_state(*args): return _coot.set_write_conect_record_state(*args) set_write_conect_record_state = _coot.set_write_conect_record_state def info_dialog(*args): return _coot.info_dialog(*args) info_dialog = _coot.info_dialog def info_dialog_and_text(*args): return _coot.info_dialog_and_text(*args) info_dialog_and_text = _coot.info_dialog_and_text def set_refmac_counter(*args): return _coot.set_refmac_counter(*args) set_refmac_counter = _coot.set_refmac_counter def get_refmac_sad_atom_info_py(): return _coot.get_refmac_sad_atom_info_py() get_refmac_sad_atom_info_py = _coot.get_refmac_sad_atom_info_py def swap_map_colours(*args): return _coot.swap_map_colours(*args) swap_map_colours = _coot.swap_map_colours def set_keep_map_colour_after_refmac(*args): return _coot.set_keep_map_colour_after_refmac(*args) set_keep_map_colour_after_refmac = _coot.set_keep_map_colour_after_refmac def keep_map_colour_after_refmac_state(): return _coot.keep_map_colour_after_refmac_state() keep_map_colour_after_refmac_state = _coot.keep_map_colour_after_refmac_state def refmac_runs_with_nolabels(): return _coot.refmac_runs_with_nolabels() refmac_runs_with_nolabels = _coot.refmac_runs_with_nolabels def get_text_for_symmetry_size_widget(): return _coot.get_text_for_symmetry_size_widget() get_text_for_symmetry_size_widget = _coot.get_text_for_symmetry_size_widget def set_symmetry_size_from_widget(*args): return _coot.set_symmetry_size_from_widget(*args) set_symmetry_size_from_widget = _coot.set_symmetry_size_from_widget def set_symmetry_size(*args): return _coot.set_symmetry_size(*args) set_symmetry_size = _coot.set_symmetry_size def get_symmetry_bonds_colour(*args): return _coot.get_symmetry_bonds_colour(*args) get_symmetry_bonds_colour = _coot.get_symmetry_bonds_colour def get_show_symmetry(): return _coot.get_show_symmetry() get_show_symmetry = _coot.get_show_symmetry def set_show_symmetry_master(*args): return _coot.set_show_symmetry_master(*args) set_show_symmetry_master = _coot.set_show_symmetry_master def set_show_symmetry_molecule(*args): return _coot.set_show_symmetry_molecule(*args) set_show_symmetry_molecule = _coot.set_show_symmetry_molecule def symmetry_as_calphas(*args): return _coot.symmetry_as_calphas(*args) symmetry_as_calphas = _coot.symmetry_as_calphas def get_symmetry_as_calphas_state(*args): return _coot.get_symmetry_as_calphas_state(*args) get_symmetry_as_calphas_state = _coot.get_symmetry_as_calphas_state def set_symmetry_molecule_rotate_colour_map(*args): return _coot.set_symmetry_molecule_rotate_colour_map(*args) set_symmetry_molecule_rotate_colour_map = _coot.set_symmetry_molecule_rotate_colour_map def symmetry_molecule_rotate_colour_map_state(*args): return _coot.symmetry_molecule_rotate_colour_map_state(*args) symmetry_molecule_rotate_colour_map_state = _coot.symmetry_molecule_rotate_colour_map_state def set_symmetry_colour_by_symop(*args): return _coot.set_symmetry_colour_by_symop(*args) set_symmetry_colour_by_symop = _coot.set_symmetry_colour_by_symop def set_symmetry_whole_chain(*args): return _coot.set_symmetry_whole_chain(*args) set_symmetry_whole_chain = _coot.set_symmetry_whole_chain def set_symmetry_atom_labels_expanded(*args): return _coot.set_symmetry_atom_labels_expanded(*args) set_symmetry_atom_labels_expanded = _coot.set_symmetry_atom_labels_expanded def has_unit_cell_state(*args): return _coot.has_unit_cell_state(*args) has_unit_cell_state = _coot.has_unit_cell_state def undo_symmetry_view(): return _coot.undo_symmetry_view() undo_symmetry_view = _coot.undo_symmetry_view def first_molecule_with_symmetry_displayed(): return _coot.first_molecule_with_symmetry_displayed() first_molecule_with_symmetry_displayed = _coot.first_molecule_with_symmetry_displayed def save_symmetry_coords(*args): return _coot.save_symmetry_coords(*args) save_symmetry_coords = _coot.save_symmetry_coords def new_molecule_by_symmetry(*args): return _coot.new_molecule_by_symmetry(*args) new_molecule_by_symmetry = _coot.new_molecule_by_symmetry def new_molecule_by_symmetry_with_atom_selection(*args): return _coot.new_molecule_by_symmetry_with_atom_selection(*args) new_molecule_by_symmetry_with_atom_selection = _coot.new_molecule_by_symmetry_with_atom_selection def new_molecule_by_symop(*args): return _coot.new_molecule_by_symop(*args) new_molecule_by_symop = _coot.new_molecule_by_symop def n_symops(*args): return _coot.n_symops(*args) n_symops = _coot.n_symops def move_reference_chain_to_symm_chain_position(): return _coot.move_reference_chain_to_symm_chain_position() move_reference_chain_to_symm_chain_position = _coot.move_reference_chain_to_symm_chain_position def origin_pre_shift_py(*args): return _coot.origin_pre_shift_py(*args) origin_pre_shift_py = _coot.origin_pre_shift_py def setup_save_symmetry_coords(): return _coot.setup_save_symmetry_coords() setup_save_symmetry_coords = _coot.setup_save_symmetry_coords def set_space_group(*args): return _coot.set_space_group(*args) set_space_group = _coot.set_space_group def set_symmetry_shift_search_size(*args): return _coot.set_symmetry_shift_search_size(*args) set_symmetry_shift_search_size = _coot.set_symmetry_shift_search_size def save_coords_name_suggestion_py(*args): return _coot.save_coords_name_suggestion_py(*args) save_coords_name_suggestion_py = _coot.save_coords_name_suggestion_py def print_all_history_in_scheme(): return _coot.print_all_history_in_scheme() print_all_history_in_scheme = _coot.print_all_history_in_scheme def print_all_history_in_python(): return _coot.print_all_history_in_python() print_all_history_in_python = _coot.print_all_history_in_python def set_console_display_commands_state(*args): return _coot.set_console_display_commands_state(*args) set_console_display_commands_state = _coot.set_console_display_commands_state def set_console_display_commands_hilights(*args): return _coot.set_console_display_commands_hilights(*args) set_console_display_commands_hilights = _coot.set_console_display_commands_hilights def save_state(): return _coot.save_state() save_state = _coot.save_state def save_state_file(*args): return _coot.save_state_file(*args) save_state_file = _coot.save_state_file def save_state_file_py(*args): return _coot.save_state_file_py(*args) save_state_file_py = _coot.save_state_file_py def set_save_state_file_name(*args): return _coot.set_save_state_file_name(*args) set_save_state_file_name = _coot.set_save_state_file_name def save_state_file_name_py(): return _coot.save_state_file_name_py() save_state_file_name_py = _coot.save_state_file_name_py def save_state_file_name_raw(): return _coot.save_state_file_name_raw() save_state_file_name_raw = _coot.save_state_file_name_raw def set_run_state_file_status(*args): return _coot.set_run_state_file_status(*args) set_run_state_file_status = _coot.set_run_state_file_status def run_state_file(): return _coot.run_state_file() run_state_file = _coot.run_state_file def run_state_file_py(): return _coot.run_state_file_py() run_state_file_py = _coot.run_state_file_py def run_state_file_maybe(): return _coot.run_state_file_maybe() run_state_file_maybe = _coot.run_state_file_maybe VT_FLAT = _coot.VT_FLAT VT_SPHERICAL = _coot.VT_SPHERICAL def vt_surface(*args): return _coot.vt_surface(*args) vt_surface = _coot.vt_surface def vt_surface_status(): return _coot.vt_surface_status() vt_surface_status = _coot.vt_surface_status def set_clipping_back(*args): return _coot.set_clipping_back(*args) set_clipping_back = _coot.set_clipping_back def set_clipping_front(*args): return _coot.set_clipping_front(*args) set_clipping_front = _coot.set_clipping_front def get_show_unit_cell(*args): return _coot.get_show_unit_cell(*args) get_show_unit_cell = _coot.get_show_unit_cell def set_show_unit_cells_all(*args): return _coot.set_show_unit_cells_all(*args) set_show_unit_cells_all = _coot.set_show_unit_cells_all def set_show_unit_cell(*args): return _coot.set_show_unit_cell(*args) set_show_unit_cell = _coot.set_show_unit_cell def set_unit_cell_colour(*args): return _coot.set_unit_cell_colour(*args) set_unit_cell_colour = _coot.set_unit_cell_colour def set_symmetry_colour_merge(*args): return _coot.set_symmetry_colour_merge(*args) set_symmetry_colour_merge = _coot.set_symmetry_colour_merge def set_colour_map_rotation_on_read_pdb(*args): return _coot.set_colour_map_rotation_on_read_pdb(*args) set_colour_map_rotation_on_read_pdb = _coot.set_colour_map_rotation_on_read_pdb def set_colour_map_rotation_on_read_pdb_flag(*args): return _coot.set_colour_map_rotation_on_read_pdb_flag(*args) set_colour_map_rotation_on_read_pdb_flag = _coot.set_colour_map_rotation_on_read_pdb_flag def set_colour_map_rotation_on_read_pdb_c_only_flag(*args): return _coot.set_colour_map_rotation_on_read_pdb_c_only_flag(*args) set_colour_map_rotation_on_read_pdb_c_only_flag = _coot.set_colour_map_rotation_on_read_pdb_c_only_flag def set_colour_by_chain(*args): return _coot.set_colour_by_chain(*args) set_colour_by_chain = _coot.set_colour_by_chain def set_colour_by_molecule(*args): return _coot.set_colour_by_molecule(*args) set_colour_by_molecule = _coot.set_colour_by_molecule def get_colour_map_rotation_on_read_pdb_c_only_flag(): return _coot.get_colour_map_rotation_on_read_pdb_c_only_flag() get_colour_map_rotation_on_read_pdb_c_only_flag = _coot.get_colour_map_rotation_on_read_pdb_c_only_flag def set_symmetry_colour(*args): return _coot.set_symmetry_colour(*args) set_symmetry_colour = _coot.set_symmetry_colour def set_colour_map_rotation_for_map(*args): return _coot.set_colour_map_rotation_for_map(*args) set_colour_map_rotation_for_map = _coot.set_colour_map_rotation_for_map def set_molecule_bonds_colour_map_rotation(*args): return _coot.set_molecule_bonds_colour_map_rotation(*args) set_molecule_bonds_colour_map_rotation = _coot.set_molecule_bonds_colour_map_rotation def get_molecule_bonds_colour_map_rotation(*args): return _coot.get_molecule_bonds_colour_map_rotation(*args) get_molecule_bonds_colour_map_rotation = _coot.get_molecule_bonds_colour_map_rotation def get_limit_aniso(): return _coot.get_limit_aniso() get_limit_aniso = _coot.get_limit_aniso def get_show_limit_aniso(): return _coot.get_show_limit_aniso() get_show_limit_aniso = _coot.get_show_limit_aniso def get_show_aniso(): return _coot.get_show_aniso() get_show_aniso = _coot.get_show_aniso def set_limit_aniso(*args): return _coot.set_limit_aniso(*args) set_limit_aniso = _coot.set_limit_aniso def set_aniso_limit_size_from_widget(*args): return _coot.set_aniso_limit_size_from_widget(*args) set_aniso_limit_size_from_widget = _coot.set_aniso_limit_size_from_widget def set_show_aniso(*args): return _coot.set_show_aniso(*args) set_show_aniso = _coot.set_show_aniso def get_text_for_aniso_limit_radius_entry(): return _coot.get_text_for_aniso_limit_radius_entry() get_text_for_aniso_limit_radius_entry = _coot.get_text_for_aniso_limit_radius_entry def set_aniso_probability(*args): return _coot.set_aniso_probability(*args) set_aniso_probability = _coot.set_aniso_probability def get_aniso_probability(): return _coot.get_aniso_probability() get_aniso_probability = _coot.get_aniso_probability def set_graphics_window_size(*args): return _coot.set_graphics_window_size(*args) set_graphics_window_size = _coot.set_graphics_window_size def set_graphics_window_position(*args): return _coot.set_graphics_window_position(*args) set_graphics_window_position = _coot.set_graphics_window_position def store_graphics_window_position(*args): return _coot.store_graphics_window_position(*args) store_graphics_window_position = _coot.store_graphics_window_position def graphics_draw(): return _coot.graphics_draw() graphics_draw = _coot.graphics_draw def zalman_stereo_mode(): return _coot.zalman_stereo_mode() zalman_stereo_mode = _coot.zalman_stereo_mode def hardware_stereo_mode(): return _coot.hardware_stereo_mode() hardware_stereo_mode = _coot.hardware_stereo_mode def stereo_mode_state(): return _coot.stereo_mode_state() stereo_mode_state = _coot.stereo_mode_state def mono_mode(): return _coot.mono_mode() mono_mode = _coot.mono_mode def side_by_side_stereo_mode(*args): return _coot.side_by_side_stereo_mode(*args) side_by_side_stereo_mode = _coot.side_by_side_stereo_mode def set_dti_stereo_mode(*args): return _coot.set_dti_stereo_mode(*args) set_dti_stereo_mode = _coot.set_dti_stereo_mode def set_hardware_stereo_angle_factor(*args): return _coot.set_hardware_stereo_angle_factor(*args) set_hardware_stereo_angle_factor = _coot.set_hardware_stereo_angle_factor def hardware_stereo_angle_factor_state(): return _coot.hardware_stereo_angle_factor_state() hardware_stereo_angle_factor_state = _coot.hardware_stereo_angle_factor_state def set_model_fit_refine_dialog_position(*args): return _coot.set_model_fit_refine_dialog_position(*args) set_model_fit_refine_dialog_position = _coot.set_model_fit_refine_dialog_position def set_display_control_dialog_position(*args): return _coot.set_display_control_dialog_position(*args) set_display_control_dialog_position = _coot.set_display_control_dialog_position def set_go_to_atom_window_position(*args): return _coot.set_go_to_atom_window_position(*args) set_go_to_atom_window_position = _coot.set_go_to_atom_window_position def set_delete_dialog_position(*args): return _coot.set_delete_dialog_position(*args) set_delete_dialog_position = _coot.set_delete_dialog_position def set_rotate_translate_dialog_position(*args): return _coot.set_rotate_translate_dialog_position(*args) set_rotate_translate_dialog_position = _coot.set_rotate_translate_dialog_position def set_accept_reject_dialog_position(*args): return _coot.set_accept_reject_dialog_position(*args) set_accept_reject_dialog_position = _coot.set_accept_reject_dialog_position def set_ramachandran_plot_dialog_position(*args): return _coot.set_ramachandran_plot_dialog_position(*args) set_ramachandran_plot_dialog_position = _coot.set_ramachandran_plot_dialog_position def set_edit_chi_angles_dialog_position(*args): return _coot.set_edit_chi_angles_dialog_position(*args) set_edit_chi_angles_dialog_position = _coot.set_edit_chi_angles_dialog_position def set_rotamer_selection_dialog_position(*args): return _coot.set_rotamer_selection_dialog_position(*args) set_rotamer_selection_dialog_position = _coot.set_rotamer_selection_dialog_position def set_smooth_scroll_flag(*args): return _coot.set_smooth_scroll_flag(*args) set_smooth_scroll_flag = _coot.set_smooth_scroll_flag def get_smooth_scroll(): return _coot.get_smooth_scroll() get_smooth_scroll = _coot.get_smooth_scroll def set_smooth_scroll_steps_str(*args): return _coot.set_smooth_scroll_steps_str(*args) set_smooth_scroll_steps_str = _coot.set_smooth_scroll_steps_str def set_smooth_scroll_steps(*args): return _coot.set_smooth_scroll_steps(*args) set_smooth_scroll_steps = _coot.set_smooth_scroll_steps def get_text_for_smooth_scroll_steps(): return _coot.get_text_for_smooth_scroll_steps() get_text_for_smooth_scroll_steps = _coot.get_text_for_smooth_scroll_steps def set_smooth_scroll_limit_str(*args): return _coot.set_smooth_scroll_limit_str(*args) set_smooth_scroll_limit_str = _coot.set_smooth_scroll_limit_str def set_smooth_scroll_limit(*args): return _coot.set_smooth_scroll_limit(*args) set_smooth_scroll_limit = _coot.set_smooth_scroll_limit def get_text_for_smooth_scroll_limit(): return _coot.get_text_for_smooth_scroll_limit() get_text_for_smooth_scroll_limit = _coot.get_text_for_smooth_scroll_limit def set_font_size(*args): return _coot.set_font_size(*args) set_font_size = _coot.set_font_size def get_font_size(): return _coot.get_font_size() get_font_size = _coot.get_font_size def set_font_colour(*args): return _coot.set_font_colour(*args) set_font_colour = _coot.set_font_colour def set_use_stroke_characters(*args): return _coot.set_use_stroke_characters(*args) set_use_stroke_characters = _coot.set_use_stroke_characters def set_rotation_centre_size_from_widget(*args): return _coot.set_rotation_centre_size_from_widget(*args) set_rotation_centre_size_from_widget = _coot.set_rotation_centre_size_from_widget def set_rotation_centre_size(*args): return _coot.set_rotation_centre_size(*args) set_rotation_centre_size = _coot.set_rotation_centre_size def get_text_for_rotation_centre_cube_size(): return _coot.get_text_for_rotation_centre_cube_size() get_text_for_rotation_centre_cube_size = _coot.get_text_for_rotation_centre_cube_size def recentre_on_read_pdb(): return _coot.recentre_on_read_pdb() recentre_on_read_pdb = _coot.recentre_on_read_pdb def set_recentre_on_read_pdb(*args): return _coot.set_recentre_on_read_pdb(*args) set_recentre_on_read_pdb = _coot.set_recentre_on_read_pdb def set_rotation_centre_internal(*args): return _coot.set_rotation_centre_internal(*args) set_rotation_centre_internal = _coot.set_rotation_centre_internal def rotation_centre_position(*args): return _coot.rotation_centre_position(*args) rotation_centre_position = _coot.rotation_centre_position def go_to_ligand(): return _coot.go_to_ligand() go_to_ligand = _coot.go_to_ligand def set_go_to_ligand_n_atoms_limit(*args): return _coot.set_go_to_ligand_n_atoms_limit(*args) set_go_to_ligand_n_atoms_limit = _coot.set_go_to_ligand_n_atoms_limit def set_draw_axes(*args): return _coot.set_draw_axes(*args) set_draw_axes = _coot.set_draw_axes def atom_index(*args): return _coot.atom_index(*args) atom_index = _coot.atom_index def atom_index_full(*args): return _coot.atom_index_full(*args) atom_index_full = _coot.atom_index_full def atom_index_first_atom_in_residue(*args): return _coot.atom_index_first_atom_in_residue(*args) atom_index_first_atom_in_residue = _coot.atom_index_first_atom_in_residue def atom_index_first_atom_in_residue_with_altconf(*args): return _coot.atom_index_first_atom_in_residue_with_altconf(*args) atom_index_first_atom_in_residue_with_altconf = _coot.atom_index_first_atom_in_residue_with_altconf def median_temperature_factor(*args): return _coot.median_temperature_factor(*args) median_temperature_factor = _coot.median_temperature_factor def average_temperature_factor(*args): return _coot.average_temperature_factor(*args) average_temperature_factor = _coot.average_temperature_factor def standard_deviation_temperature_factor(*args): return _coot.standard_deviation_temperature_factor(*args) standard_deviation_temperature_factor = _coot.standard_deviation_temperature_factor def clear_pending_picks(): return _coot.clear_pending_picks() clear_pending_picks = _coot.clear_pending_picks def centre_of_mass_string(*args): return _coot.centre_of_mass_string(*args) centre_of_mass_string = _coot.centre_of_mass_string def centre_of_mass_string_py(*args): return _coot.centre_of_mass_string_py(*args) centre_of_mass_string_py = _coot.centre_of_mass_string_py def set_default_temperature_factor_for_new_atoms(*args): return _coot.set_default_temperature_factor_for_new_atoms(*args) set_default_temperature_factor_for_new_atoms = _coot.set_default_temperature_factor_for_new_atoms def default_new_atoms_b_factor(): return _coot.default_new_atoms_b_factor() default_new_atoms_b_factor = _coot.default_new_atoms_b_factor def set_reset_b_factor_moved_atoms(*args): return _coot.set_reset_b_factor_moved_atoms(*args) set_reset_b_factor_moved_atoms = _coot.set_reset_b_factor_moved_atoms def get_reset_b_factor_moved_atoms_state(): return _coot.get_reset_b_factor_moved_atoms_state() get_reset_b_factor_moved_atoms_state = _coot.get_reset_b_factor_moved_atoms_state def set_atom_attribute(*args): return _coot.set_atom_attribute(*args) set_atom_attribute = _coot.set_atom_attribute def set_atom_string_attribute(*args): return _coot.set_atom_string_attribute(*args) set_atom_string_attribute = _coot.set_atom_string_attribute def set_atom_attributes_py(*args): return _coot.set_atom_attributes_py(*args) set_atom_attributes_py = _coot.set_atom_attributes_py def set_residue_name(*args): return _coot.set_residue_name(*args) set_residue_name = _coot.set_residue_name def skel_greer_on(): return _coot.skel_greer_on() skel_greer_on = _coot.skel_greer_on def skel_greer_off(): return _coot.skel_greer_off() skel_greer_off = _coot.skel_greer_off def skeletonize_map(*args): return _coot.skeletonize_map(*args) skeletonize_map = _coot.skeletonize_map def unskeletonize_map(*args): return _coot.unskeletonize_map(*args) unskeletonize_map = _coot.unskeletonize_map def set_initial_map_for_skeletonize(): return _coot.set_initial_map_for_skeletonize() set_initial_map_for_skeletonize = _coot.set_initial_map_for_skeletonize def set_max_skeleton_search_depth(*args): return _coot.set_max_skeleton_search_depth(*args) set_max_skeleton_search_depth = _coot.set_max_skeleton_search_depth def get_text_for_skeletonization_level_entry(): return _coot.get_text_for_skeletonization_level_entry() get_text_for_skeletonization_level_entry = _coot.get_text_for_skeletonization_level_entry def set_skeletonization_level_from_widget(*args): return _coot.set_skeletonization_level_from_widget(*args) set_skeletonization_level_from_widget = _coot.set_skeletonization_level_from_widget def get_text_for_skeleton_box_size_entry(): return _coot.get_text_for_skeleton_box_size_entry() get_text_for_skeleton_box_size_entry = _coot.get_text_for_skeleton_box_size_entry def set_skeleton_box_size_from_widget(*args): return _coot.set_skeleton_box_size_from_widget(*args) set_skeleton_box_size_from_widget = _coot.set_skeleton_box_size_from_widget def set_skeleton_box_size(*args): return _coot.set_skeleton_box_size(*args) set_skeleton_box_size = _coot.set_skeleton_box_size def handle_skeleton_colour_change(*args): return _coot.handle_skeleton_colour_change(*args) handle_skeleton_colour_change = _coot.handle_skeleton_colour_change def set_skeleton_colour(*args): return _coot.set_skeleton_colour(*args) set_skeleton_colour = _coot.set_skeleton_colour def get_skeleton_colour(): return _coot.get_skeleton_colour() get_skeleton_colour = _coot.get_skeleton_colour def handle_read_ccp4_map(*args): return _coot.handle_read_ccp4_map(*args) handle_read_ccp4_map = _coot.handle_read_ccp4_map def save_coordinates(*args): return _coot.save_coordinates(*args) save_coordinates = _coot.save_coordinates def set_save_coordinates_in_original_directory(*args): return _coot.set_save_coordinates_in_original_directory(*args) set_save_coordinates_in_original_directory = _coot.set_save_coordinates_in_original_directory def save_molecule_number_from_option_menu(): return _coot.save_molecule_number_from_option_menu() save_molecule_number_from_option_menu = _coot.save_molecule_number_from_option_menu def set_save_molecule_number(*args): return _coot.set_save_molecule_number(*args) set_save_molecule_number = _coot.set_save_molecule_number def read_phs_and_coords_and_make_map(*args): return _coot.read_phs_and_coords_and_make_map(*args) read_phs_and_coords_and_make_map = _coot.read_phs_and_coords_and_make_map def read_phs_and_make_map_using_cell_symm_from_previous_mol(*args): return _coot.read_phs_and_make_map_using_cell_symm_from_previous_mol(*args) read_phs_and_make_map_using_cell_symm_from_previous_mol = _coot.read_phs_and_make_map_using_cell_symm_from_previous_mol def read_phs_and_make_map_using_cell_symm_from_mol(*args): return _coot.read_phs_and_make_map_using_cell_symm_from_mol(*args) read_phs_and_make_map_using_cell_symm_from_mol = _coot.read_phs_and_make_map_using_cell_symm_from_mol def read_phs_and_make_map_using_cell_symm_from_mol_using_implicit_phs_filename(*args): return _coot.read_phs_and_make_map_using_cell_symm_from_mol_using_implicit_phs_filename(*args) read_phs_and_make_map_using_cell_symm_from_mol_using_implicit_phs_filename = _coot.read_phs_and_make_map_using_cell_symm_from_mol_using_implicit_phs_filename def read_phs_and_make_map_using_cell_symm(*args): return _coot.read_phs_and_make_map_using_cell_symm(*args) read_phs_and_make_map_using_cell_symm = _coot.read_phs_and_make_map_using_cell_symm def read_phs_and_make_map_with_reso_limits(*args): return _coot.read_phs_and_make_map_with_reso_limits(*args) read_phs_and_make_map_with_reso_limits = _coot.read_phs_and_make_map_with_reso_limits def graphics_store_phs_filename(*args): return _coot.graphics_store_phs_filename(*args) graphics_store_phs_filename = _coot.graphics_store_phs_filename def graphics_get_phs_filename(): return _coot.graphics_get_phs_filename() graphics_get_phs_filename = _coot.graphics_get_phs_filename def possible_cell_symm_for_phs_file(): return _coot.possible_cell_symm_for_phs_file() possible_cell_symm_for_phs_file = _coot.possible_cell_symm_for_phs_file def get_text_for_phs_cell_chooser(*args): return _coot.get_text_for_phs_cell_chooser(*args) get_text_for_phs_cell_chooser = _coot.get_text_for_phs_cell_chooser def undo_last_move(): return _coot.undo_last_move() undo_last_move = _coot.undo_last_move def translate_molecule_by(*args): return _coot.translate_molecule_by(*args) translate_molecule_by = _coot.translate_molecule_by def transform_molecule_by(*args): return _coot.transform_molecule_by(*args) transform_molecule_by = _coot.transform_molecule_by def transform_zone(*args): return _coot.transform_zone(*args) transform_zone = _coot.transform_zone def post_go_to_atom_window(): return _coot.post_go_to_atom_window() post_go_to_atom_window = _coot.post_go_to_atom_window def go_to_atom_molecule_number(): return _coot.go_to_atom_molecule_number() go_to_atom_molecule_number = _coot.go_to_atom_molecule_number def go_to_atom_chain_id(): return _coot.go_to_atom_chain_id() go_to_atom_chain_id = _coot.go_to_atom_chain_id def go_to_atom_atom_name(): return _coot.go_to_atom_atom_name() go_to_atom_atom_name = _coot.go_to_atom_atom_name def go_to_atom_residue_number(): return _coot.go_to_atom_residue_number() go_to_atom_residue_number = _coot.go_to_atom_residue_number def go_to_atom_ins_code(): return _coot.go_to_atom_ins_code() go_to_atom_ins_code = _coot.go_to_atom_ins_code def go_to_atom_alt_conf(): return _coot.go_to_atom_alt_conf() go_to_atom_alt_conf = _coot.go_to_atom_alt_conf def set_go_to_atom_chain_residue_atom_name(*args): return _coot.set_go_to_atom_chain_residue_atom_name(*args) set_go_to_atom_chain_residue_atom_name = _coot.set_go_to_atom_chain_residue_atom_name def set_go_to_atom_chain_residue_atom_name_full(*args): return _coot.set_go_to_atom_chain_residue_atom_name_full(*args) set_go_to_atom_chain_residue_atom_name_full = _coot.set_go_to_atom_chain_residue_atom_name_full def set_go_to_atom_chain_residue_atom_name_no_redraw(*args): return _coot.set_go_to_atom_chain_residue_atom_name_no_redraw(*args) set_go_to_atom_chain_residue_atom_name_no_redraw = _coot.set_go_to_atom_chain_residue_atom_name_no_redraw def set_go_to_atom_chain_residue_atom_name_strings(*args): return _coot.set_go_to_atom_chain_residue_atom_name_strings(*args) set_go_to_atom_chain_residue_atom_name_strings = _coot.set_go_to_atom_chain_residue_atom_name_strings def update_go_to_atom_from_current_position(): return _coot.update_go_to_atom_from_current_position() update_go_to_atom_from_current_position = _coot.update_go_to_atom_from_current_position def update_go_to_atom_residue_list(*args): return _coot.update_go_to_atom_residue_list(*args) update_go_to_atom_residue_list = _coot.update_go_to_atom_residue_list def atom_spec_to_atom_index(*args): return _coot.atom_spec_to_atom_index(*args) atom_spec_to_atom_index = _coot.atom_spec_to_atom_index def full_atom_spec_to_atom_index(*args): return _coot.full_atom_spec_to_atom_index(*args) full_atom_spec_to_atom_index = _coot.full_atom_spec_to_atom_index def update_go_to_atom_window_on_changed_mol(*args): return _coot.update_go_to_atom_window_on_changed_mol(*args) update_go_to_atom_window_on_changed_mol = _coot.update_go_to_atom_window_on_changed_mol def update_go_to_atom_window_on_new_mol(): return _coot.update_go_to_atom_window_on_new_mol() update_go_to_atom_window_on_new_mol = _coot.update_go_to_atom_window_on_new_mol def update_go_to_atom_window_on_other_molecule_chosen(*args): return _coot.update_go_to_atom_window_on_other_molecule_chosen(*args) update_go_to_atom_window_on_other_molecule_chosen = _coot.update_go_to_atom_window_on_other_molecule_chosen def set_go_to_atom_molecule(*args): return _coot.set_go_to_atom_molecule(*args) set_go_to_atom_molecule = _coot.set_go_to_atom_molecule def unset_go_to_atom_widget(): return _coot.unset_go_to_atom_widget() unset_go_to_atom_widget = _coot.unset_go_to_atom_widget def autobuild_ca_off(): return _coot.autobuild_ca_off() autobuild_ca_off = _coot.autobuild_ca_off def test_fragment(): return _coot.test_fragment() test_fragment = _coot.test_fragment def do_skeleton_prune(): return _coot.do_skeleton_prune() do_skeleton_prune = _coot.do_skeleton_prune def test_function(*args): return _coot.test_function(*args) test_function = _coot.test_function def test_function_py(*args): return _coot.test_function_py(*args) test_function_py = _coot.test_function_py def glyco_tree_test(): return _coot.glyco_tree_test() glyco_tree_test = _coot.glyco_tree_test def post_display_control_window(): return _coot.post_display_control_window() post_display_control_window = _coot.post_display_control_window def add_map_display_control_widgets(): return _coot.add_map_display_control_widgets() add_map_display_control_widgets = _coot.add_map_display_control_widgets def add_mol_display_control_widgets(): return _coot.add_mol_display_control_widgets() add_mol_display_control_widgets = _coot.add_mol_display_control_widgets def add_map_and_mol_display_control_widgets(): return _coot.add_map_and_mol_display_control_widgets() add_map_and_mol_display_control_widgets = _coot.add_map_and_mol_display_control_widgets def reset_graphics_display_control_window(): return _coot.reset_graphics_display_control_window() reset_graphics_display_control_window = _coot.reset_graphics_display_control_window def close_graphics_display_control_window(): return _coot.close_graphics_display_control_window() close_graphics_display_control_window = _coot.close_graphics_display_control_window def set_map_displayed(*args): return _coot.set_map_displayed(*args) set_map_displayed = _coot.set_map_displayed def set_mol_displayed(*args): return _coot.set_mol_displayed(*args) set_mol_displayed = _coot.set_mol_displayed def set_display_only_model_mol(*args): return _coot.set_display_only_model_mol(*args) set_display_only_model_mol = _coot.set_display_only_model_mol def set_mol_active(*args): return _coot.set_mol_active(*args) set_mol_active = _coot.set_mol_active def display_maps_py(*args): return _coot.display_maps_py(*args) display_maps_py = _coot.display_maps_py def mol_is_displayed(*args): return _coot.mol_is_displayed(*args) mol_is_displayed = _coot.mol_is_displayed def mol_is_active(*args): return _coot.mol_is_active(*args) mol_is_active = _coot.mol_is_active def map_is_displayed(*args): return _coot.map_is_displayed(*args) map_is_displayed = _coot.map_is_displayed def set_all_maps_displayed(*args): return _coot.set_all_maps_displayed(*args) set_all_maps_displayed = _coot.set_all_maps_displayed def set_all_models_displayed_and_active(*args): return _coot.set_all_models_displayed_and_active(*args) set_all_models_displayed_and_active = _coot.set_all_models_displayed_and_active def space_group_py(*args): return _coot.space_group_py(*args) space_group_py = _coot.space_group_py def show_spacegroup(*args): return _coot.show_spacegroup(*args) show_spacegroup = _coot.show_spacegroup def symmetry_operators_py(*args): return _coot.symmetry_operators_py(*args) symmetry_operators_py = _coot.symmetry_operators_py def symmetry_operators_to_xHM_py(*args): return _coot.symmetry_operators_to_xHM_py(*args) symmetry_operators_to_xHM_py = _coot.symmetry_operators_to_xHM_py def merge_molecules_py(*args): return _coot.merge_molecules_py(*args) merge_molecules_py = _coot.merge_molecules_py def align_and_mutate(*args): return _coot.align_and_mutate(*args) align_and_mutate = _coot.align_and_mutate def set_alignment_gap_and_space_penalty(*args): return _coot.set_alignment_gap_and_space_penalty(*args) set_alignment_gap_and_space_penalty = _coot.set_alignment_gap_and_space_penalty def alignment_results_py(*args): return _coot.alignment_results_py(*args) alignment_results_py = _coot.alignment_results_py def nearest_residue_by_sequence_py(*args): return _coot.nearest_residue_by_sequence_py(*args) nearest_residue_by_sequence_py = _coot.nearest_residue_by_sequence_py def renumber_residue_range(*args): return _coot.renumber_residue_range(*args) renumber_residue_range = _coot.renumber_residue_range def change_residue_number(*args): return _coot.change_residue_number(*args) change_residue_number = _coot.change_residue_number def change_chain_id(*args): return _coot.change_chain_id(*args) change_chain_id = _coot.change_chain_id def change_chain_id_with_result_py(*args): return _coot.change_chain_id_with_result_py(*args) change_chain_id_with_result_py = _coot.change_chain_id_with_result_py def probe_available_p(): return _coot.probe_available_p() probe_available_p = _coot.probe_available_p def probe_available_p_py(): return _coot.probe_available_p_py() probe_available_p_py = _coot.probe_available_p_py def post_scripting_window(): return _coot.post_scripting_window() post_scripting_window = _coot.post_scripting_window def post_scheme_scripting_window(): return _coot.post_scheme_scripting_window() post_scheme_scripting_window = _coot.post_scheme_scripting_window def post_python_scripting_window(): return _coot.post_python_scripting_window() post_python_scripting_window = _coot.post_python_scripting_window def run_command_line_scripts(): return _coot.run_command_line_scripts() run_command_line_scripts = _coot.run_command_line_scripts def set_guile_gui_loaded_flag(): return _coot.set_guile_gui_loaded_flag() set_guile_gui_loaded_flag = _coot.set_guile_gui_loaded_flag def set_python_gui_loaded_flag(): return _coot.set_python_gui_loaded_flag() set_python_gui_loaded_flag = _coot.set_python_gui_loaded_flag def set_found_coot_gui(): return _coot.set_found_coot_gui() set_found_coot_gui = _coot.set_found_coot_gui def set_found_coot_python_gui(): return _coot.set_found_coot_python_gui() set_found_coot_python_gui = _coot.set_found_coot_python_gui def get_coords_for_accession_code(*args): return _coot.get_coords_for_accession_code(*args) get_coords_for_accession_code = _coot.get_coords_for_accession_code def run_script(*args): return _coot.run_script(*args) run_script = _coot.run_script def run_guile_script(*args): return _coot.run_guile_script(*args) run_guile_script = _coot.run_guile_script def run_python_script(*args): return _coot.run_python_script(*args) run_python_script = _coot.run_python_script def import_python_module(*args): return _coot.import_python_module(*args) import_python_module = _coot.import_python_module def auto_load_dictionary(*args): return _coot.auto_load_dictionary(*args) auto_load_dictionary = _coot.auto_load_dictionary def reload_dictionary(*args): return _coot.reload_dictionary(*args) reload_dictionary = _coot.reload_dictionary def add_non_auto_load_residue_name(*args): return _coot.add_non_auto_load_residue_name(*args) add_non_auto_load_residue_name = _coot.add_non_auto_load_residue_name def remove_non_auto_load_residue_name(*args): return _coot.remove_non_auto_load_residue_name(*args) remove_non_auto_load_residue_name = _coot.remove_non_auto_load_residue_name def matching_compound_names_from_dictionary_py(*args): return _coot.matching_compound_names_from_dictionary_py(*args) matching_compound_names_from_dictionary_py = _coot.matching_compound_names_from_dictionary_py def comp_id_to_name_py(*args): return _coot.comp_id_to_name_py(*args) comp_id_to_name_py = _coot.comp_id_to_name_py def do_regularize(*args): return _coot.do_regularize(*args) do_regularize = _coot.do_regularize def do_refine(*args): return _coot.do_refine(*args) do_refine = _coot.do_refine def do_regularize_kill_delete_dialog(): return _coot.do_regularize_kill_delete_dialog() do_regularize_kill_delete_dialog = _coot.do_regularize_kill_delete_dialog def add_planar_peptide_restraints(): return _coot.add_planar_peptide_restraints() add_planar_peptide_restraints = _coot.add_planar_peptide_restraints def remove_planar_peptide_restraints(): return _coot.remove_planar_peptide_restraints() remove_planar_peptide_restraints = _coot.remove_planar_peptide_restraints def planar_peptide_restraints_state(): return _coot.planar_peptide_restraints_state() planar_peptide_restraints_state = _coot.planar_peptide_restraints_state def set_use_trans_peptide_restraints(*args): return _coot.set_use_trans_peptide_restraints(*args) set_use_trans_peptide_restraints = _coot.set_use_trans_peptide_restraints def add_omega_torsion_restriants(): return _coot.add_omega_torsion_restriants() add_omega_torsion_restriants = _coot.add_omega_torsion_restriants def remove_omega_torsion_restriants(): return _coot.remove_omega_torsion_restriants() remove_omega_torsion_restriants = _coot.remove_omega_torsion_restriants def set_refinement_immediate_replacement(*args): return _coot.set_refinement_immediate_replacement(*args) set_refinement_immediate_replacement = _coot.set_refinement_immediate_replacement def refinement_immediate_replacement_state(): return _coot.refinement_immediate_replacement_state() refinement_immediate_replacement_state = _coot.refinement_immediate_replacement_state def set_residue_selection_flash_frames_number(*args): return _coot.set_residue_selection_flash_frames_number(*args) set_residue_selection_flash_frames_number = _coot.set_residue_selection_flash_frames_number def accept_regularizement(): return _coot.accept_regularizement() accept_regularizement = _coot.accept_regularizement def clear_up_moving_atoms(): return _coot.clear_up_moving_atoms() clear_up_moving_atoms = _coot.clear_up_moving_atoms def clear_moving_atoms_object(): return _coot.clear_moving_atoms_object() clear_moving_atoms_object = _coot.clear_moving_atoms_object def refine_residues_py(*args): return _coot.refine_residues_py(*args) refine_residues_py = _coot.refine_residues_py def refine_residues_with_alt_conf_py(*args): return _coot.refine_residues_with_alt_conf_py(*args) refine_residues_with_alt_conf_py = _coot.refine_residues_with_alt_conf_py def regularize_residues_py(*args): return _coot.regularize_residues_py(*args) regularize_residues_py = _coot.regularize_residues_py def regularize_residues_with_alt_conf_py(*args): return _coot.regularize_residues_with_alt_conf_py(*args) regularize_residues_with_alt_conf_py = _coot.regularize_residues_with_alt_conf_py def set_refine_with_torsion_restraints(*args): return _coot.set_refine_with_torsion_restraints(*args) set_refine_with_torsion_restraints = _coot.set_refine_with_torsion_restraints def refine_with_torsion_restraints_state(): return _coot.refine_with_torsion_restraints_state() refine_with_torsion_restraints_state = _coot.refine_with_torsion_restraints_state def set_matrix(*args): return _coot.set_matrix(*args) set_matrix = _coot.set_matrix def matrix_state(): return _coot.matrix_state() matrix_state = _coot.matrix_state def set_refine_auto_range_step(*args): return _coot.set_refine_auto_range_step(*args) set_refine_auto_range_step = _coot.set_refine_auto_range_step def set_refine_max_residues(*args): return _coot.set_refine_max_residues(*args) set_refine_max_residues = _coot.set_refine_max_residues def refine_zone_atom_index_define(*args): return _coot.refine_zone_atom_index_define(*args) refine_zone_atom_index_define = _coot.refine_zone_atom_index_define def refine_zone(*args): return _coot.refine_zone(*args) refine_zone = _coot.refine_zone def refine_zone_with_score_py(*args): return _coot.refine_zone_with_score_py(*args) refine_zone_with_score_py = _coot.refine_zone_with_score_py def regularize_zone_with_score_py(*args): return _coot.regularize_zone_with_score_py(*args) regularize_zone_with_score_py = _coot.regularize_zone_with_score_py def refine_auto_range(*args): return _coot.refine_auto_range(*args) refine_auto_range = _coot.refine_auto_range def regularize_zone(*args): return _coot.regularize_zone(*args) regularize_zone = _coot.regularize_zone def set_dragged_refinement_steps_per_frame(*args): return _coot.set_dragged_refinement_steps_per_frame(*args) set_dragged_refinement_steps_per_frame = _coot.set_dragged_refinement_steps_per_frame def dragged_refinement_steps_per_frame(): return _coot.dragged_refinement_steps_per_frame() dragged_refinement_steps_per_frame = _coot.dragged_refinement_steps_per_frame def set_refinement_refine_per_frame(*args): return _coot.set_refinement_refine_per_frame(*args) set_refinement_refine_per_frame = _coot.set_refinement_refine_per_frame def refinement_refine_per_frame_state(): return _coot.refinement_refine_per_frame_state() refinement_refine_per_frame_state = _coot.refinement_refine_per_frame_state def set_refinement_drag_elasticity(*args): return _coot.set_refinement_drag_elasticity(*args) set_refinement_drag_elasticity = _coot.set_refinement_drag_elasticity def set_refine_ramachandran_angles(*args): return _coot.set_refine_ramachandran_angles(*args) set_refine_ramachandran_angles = _coot.set_refine_ramachandran_angles def refine_ramachandran_angles_state(): return _coot.refine_ramachandran_angles_state() refine_ramachandran_angles_state = _coot.refine_ramachandran_angles_state def set_numerical_gradients(*args): return _coot.set_numerical_gradients(*args) set_numerical_gradients = _coot.set_numerical_gradients def set_fix_chiral_volumes_before_refinement(*args): return _coot.set_fix_chiral_volumes_before_refinement(*args) set_fix_chiral_volumes_before_refinement = _coot.set_fix_chiral_volumes_before_refinement def check_chiral_volumes(*args): return _coot.check_chiral_volumes(*args) check_chiral_volumes = _coot.check_chiral_volumes def set_show_chiral_volume_errors_dialog(*args): return _coot.set_show_chiral_volume_errors_dialog(*args) set_show_chiral_volume_errors_dialog = _coot.set_show_chiral_volume_errors_dialog def set_secondary_structure_restraints_type(*args): return _coot.set_secondary_structure_restraints_type(*args) set_secondary_structure_restraints_type = _coot.set_secondary_structure_restraints_type def secondary_structure_restraints_type(): return _coot.secondary_structure_restraints_type() secondary_structure_restraints_type = _coot.secondary_structure_restraints_type def imol_refinement_map(): return _coot.imol_refinement_map() imol_refinement_map = _coot.imol_refinement_map def set_imol_refinement_map(*args): return _coot.set_imol_refinement_map(*args) set_imol_refinement_map = _coot.set_imol_refinement_map def does_residue_exist_p(*args): return _coot.does_residue_exist_p(*args) does_residue_exist_p = _coot.does_residue_exist_p def delete_restraints(*args): return _coot.delete_restraints(*args) delete_restraints = _coot.delete_restraints def add_extra_bond_restraint(*args): return _coot.add_extra_bond_restraint(*args) add_extra_bond_restraint = _coot.add_extra_bond_restraint def add_extra_angle_restraint(*args): return _coot.add_extra_angle_restraint(*args) add_extra_angle_restraint = _coot.add_extra_angle_restraint def add_extra_torsion_restraint(*args): return _coot.add_extra_torsion_restraint(*args) add_extra_torsion_restraint = _coot.add_extra_torsion_restraint def add_extra_start_pos_restraint(*args): return _coot.add_extra_start_pos_restraint(*args) add_extra_start_pos_restraint = _coot.add_extra_start_pos_restraint def delete_all_extra_restraints(*args): return _coot.delete_all_extra_restraints(*args) delete_all_extra_restraints = _coot.delete_all_extra_restraints def delete_extra_restraints_for_residue(*args): return _coot.delete_extra_restraints_for_residue(*args) delete_extra_restraints_for_residue = _coot.delete_extra_restraints_for_residue def delete_extra_restraints_worse_than(*args): return _coot.delete_extra_restraints_worse_than(*args) delete_extra_restraints_worse_than = _coot.delete_extra_restraints_worse_than def add_refmac_extra_restraints(*args): return _coot.add_refmac_extra_restraints(*args) add_refmac_extra_restraints = _coot.add_refmac_extra_restraints def set_show_extra_restraints(*args): return _coot.set_show_extra_restraints(*args) set_show_extra_restraints = _coot.set_show_extra_restraints def extra_restraints_are_shown(*args): return _coot.extra_restraints_are_shown(*args) extra_restraints_are_shown = _coot.extra_restraints_are_shown def set_extra_restraints_prosmart_sigma_limits(*args): return _coot.set_extra_restraints_prosmart_sigma_limits(*args) set_extra_restraints_prosmart_sigma_limits = _coot.set_extra_restraints_prosmart_sigma_limits def generate_local_self_restraints(*args): return _coot.generate_local_self_restraints(*args) generate_local_self_restraints = _coot.generate_local_self_restraints def write_interpolated_extra_restraints(*args): return _coot.write_interpolated_extra_restraints(*args) write_interpolated_extra_restraints = _coot.write_interpolated_extra_restraints def write_interpolated_models_and_extra_restraints(*args): return _coot.write_interpolated_models_and_extra_restraints(*args) write_interpolated_models_and_extra_restraints = _coot.write_interpolated_models_and_extra_restraints def set_show_parallel_plane_restraints(*args): return _coot.set_show_parallel_plane_restraints(*args) set_show_parallel_plane_restraints = _coot.set_show_parallel_plane_restraints def parallel_plane_restraints_are_shown(*args): return _coot.parallel_plane_restraints_are_shown(*args) parallel_plane_restraints_are_shown = _coot.parallel_plane_restraints_are_shown def add_parallel_plane_restraint(*args): return _coot.add_parallel_plane_restraint(*args) add_parallel_plane_restraint = _coot.add_parallel_plane_restraint def set_extra_restraints_representation_for_bonds_go_to_CA(*args): return _coot.set_extra_restraints_representation_for_bonds_go_to_CA(*args) set_extra_restraints_representation_for_bonds_go_to_CA = _coot.set_extra_restraints_representation_for_bonds_go_to_CA def delete_extra_restraint_py(*args): return _coot.delete_extra_restraint_py(*args) delete_extra_restraint_py = _coot.delete_extra_restraint_py def list_extra_restraints_py(*args): return _coot.list_extra_restraints_py(*args) list_extra_restraints_py = _coot.list_extra_restraints_py def set_use_only_extra_torsion_restraints_for_torsions(*args): return _coot.set_use_only_extra_torsion_restraints_for_torsions(*args) set_use_only_extra_torsion_restraints_for_torsions = _coot.set_use_only_extra_torsion_restraints_for_torsions def use_only_extra_torsion_restraints_for_torsions_state(): return _coot.use_only_extra_torsion_restraints_for_torsions_state() use_only_extra_torsion_restraints_for_torsions_state = _coot.use_only_extra_torsion_restraints_for_torsions_state def show_restraints_editor(*args): return _coot.show_restraints_editor(*args) show_restraints_editor = _coot.show_restraints_editor def show_restraints_editor_by_index(*args): return _coot.show_restraints_editor_by_index(*args) show_restraints_editor_by_index = _coot.show_restraints_editor_by_index def write_restraints_cif_dictionary(*args): return _coot.write_restraints_cif_dictionary(*args) write_restraints_cif_dictionary = _coot.write_restraints_cif_dictionary def fit_residue_range_to_map_by_simplex(*args): return _coot.fit_residue_range_to_map_by_simplex(*args) fit_residue_range_to_map_by_simplex = _coot.fit_residue_range_to_map_by_simplex def score_residue_range_fit_to_map(*args): return _coot.score_residue_range_fit_to_map(*args) score_residue_range_fit_to_map = _coot.score_residue_range_fit_to_map def fix_nomenclature_errors(*args): return _coot.fix_nomenclature_errors(*args) fix_nomenclature_errors = _coot.fix_nomenclature_errors def set_nomenclature_errors_on_read(*args): return _coot.set_nomenclature_errors_on_read(*args) set_nomenclature_errors_on_read = _coot.set_nomenclature_errors_on_read def output_atom_info_as_text(*args): return _coot.output_atom_info_as_text(*args) output_atom_info_as_text = _coot.output_atom_info_as_text def do_residue_info_dialog(): return _coot.do_residue_info_dialog() do_residue_info_dialog = _coot.do_residue_info_dialog def output_residue_info_dialog(*args): return _coot.output_residue_info_dialog(*args) output_residue_info_dialog = _coot.output_residue_info_dialog def residue_info_dialog(*args): return _coot.residue_info_dialog(*args) residue_info_dialog = _coot.residue_info_dialog def residue_info_dialog_is_displayed(): return _coot.residue_info_dialog_is_displayed() residue_info_dialog_is_displayed = _coot.residue_info_dialog_is_displayed def output_residue_info_as_text(*args): return _coot.output_residue_info_as_text(*args) output_residue_info_as_text = _coot.output_residue_info_as_text def do_distance_define(): return _coot.do_distance_define() do_distance_define = _coot.do_distance_define def do_angle_define(): return _coot.do_angle_define() do_angle_define = _coot.do_angle_define def do_torsion_define(): return _coot.do_torsion_define() do_torsion_define = _coot.do_torsion_define def residue_info_apply_all_checkbutton_toggled(): return _coot.residue_info_apply_all_checkbutton_toggled() residue_info_apply_all_checkbutton_toggled = _coot.residue_info_apply_all_checkbutton_toggled def clear_residue_info_edit_list(): return _coot.clear_residue_info_edit_list() clear_residue_info_edit_list = _coot.clear_residue_info_edit_list def unset_residue_info_widget(): return _coot.unset_residue_info_widget() unset_residue_info_widget = _coot.unset_residue_info_widget def clear_simple_distances(): return _coot.clear_simple_distances() clear_simple_distances = _coot.clear_simple_distances def clear_last_simple_distance(): return _coot.clear_last_simple_distance() clear_last_simple_distance = _coot.clear_last_simple_distance def set_show_environment_distances(*args): return _coot.set_show_environment_distances(*args) set_show_environment_distances = _coot.set_show_environment_distances def set_show_environment_distances_bumps(*args): return _coot.set_show_environment_distances_bumps(*args) set_show_environment_distances_bumps = _coot.set_show_environment_distances_bumps def set_show_environment_distances_h_bonds(*args): return _coot.set_show_environment_distances_h_bonds(*args) set_show_environment_distances_h_bonds = _coot.set_show_environment_distances_h_bonds def show_environment_distances_state(): return _coot.show_environment_distances_state() show_environment_distances_state = _coot.show_environment_distances_state def set_environment_distances_distance_limits(*args): return _coot.set_environment_distances_distance_limits(*args) set_environment_distances_distance_limits = _coot.set_environment_distances_distance_limits def set_show_environment_distances_as_solid(*args): return _coot.set_show_environment_distances_as_solid(*args) set_show_environment_distances_as_solid = _coot.set_show_environment_distances_as_solid def set_environment_distances_label_atom(*args): return _coot.set_environment_distances_label_atom(*args) set_environment_distances_label_atom = _coot.set_environment_distances_label_atom def add_geometry_distance(*args): return _coot.add_geometry_distance(*args) add_geometry_distance = _coot.add_geometry_distance def add_atom_geometry_distance_py(*args): return _coot.add_atom_geometry_distance_py(*args) add_atom_geometry_distance_py = _coot.add_atom_geometry_distance_py def set_show_pointer_distances(*args): return _coot.set_show_pointer_distances(*args) set_show_pointer_distances = _coot.set_show_pointer_distances def show_pointer_distances_state(): return _coot.show_pointer_distances_state() show_pointer_distances_state = _coot.show_pointer_distances_state def scale_zoom(*args): return _coot.scale_zoom(*args) scale_zoom = _coot.scale_zoom def scale_zoom_internal(*args): return _coot.scale_zoom_internal(*args) scale_zoom_internal = _coot.scale_zoom_internal def zoom_factor(): return _coot.zoom_factor() zoom_factor = _coot.zoom_factor def set_smooth_scroll_do_zoom(*args): return _coot.set_smooth_scroll_do_zoom(*args) set_smooth_scroll_do_zoom = _coot.set_smooth_scroll_do_zoom def smooth_scroll_do_zoom(): return _coot.smooth_scroll_do_zoom() smooth_scroll_do_zoom = _coot.smooth_scroll_do_zoom def smooth_scroll_zoom_limit(): return _coot.smooth_scroll_zoom_limit() smooth_scroll_zoom_limit = _coot.smooth_scroll_zoom_limit def set_smooth_scroll_zoom_limit(*args): return _coot.set_smooth_scroll_zoom_limit(*args) set_smooth_scroll_zoom_limit = _coot.set_smooth_scroll_zoom_limit def set_zoom(*args): return _coot.set_zoom(*args) set_zoom = _coot.set_zoom def handle_cns_data_file(*args): return _coot.handle_cns_data_file(*args) handle_cns_data_file = _coot.handle_cns_data_file def handle_cns_data_file_with_cell(*args): return _coot.handle_cns_data_file_with_cell(*args) handle_cns_data_file_with_cell = _coot.handle_cns_data_file_with_cell def auto_read_cif_data_with_phases(*args): return _coot.auto_read_cif_data_with_phases(*args) auto_read_cif_data_with_phases = _coot.auto_read_cif_data_with_phases def read_cif_data_with_phases_sigmaa(*args): return _coot.read_cif_data_with_phases_sigmaa(*args) read_cif_data_with_phases_sigmaa = _coot.read_cif_data_with_phases_sigmaa def read_cif_data_with_phases_diff_sigmaa(*args): return _coot.read_cif_data_with_phases_diff_sigmaa(*args) read_cif_data_with_phases_diff_sigmaa = _coot.read_cif_data_with_phases_diff_sigmaa def read_cif_data(*args): return _coot.read_cif_data(*args) read_cif_data = _coot.read_cif_data def read_cif_data_2fofc_map(*args): return _coot.read_cif_data_2fofc_map(*args) read_cif_data_2fofc_map = _coot.read_cif_data_2fofc_map def read_cif_data_fofc_map(*args): return _coot.read_cif_data_fofc_map(*args) read_cif_data_fofc_map = _coot.read_cif_data_fofc_map def read_cif_data_with_phases_fo_fc(*args): return _coot.read_cif_data_with_phases_fo_fc(*args) read_cif_data_with_phases_fo_fc = _coot.read_cif_data_with_phases_fo_fc def read_cif_data_with_phases_2fo_fc(*args): return _coot.read_cif_data_with_phases_2fo_fc(*args) read_cif_data_with_phases_2fo_fc = _coot.read_cif_data_with_phases_2fo_fc def read_cif_data_with_phases_nfo_fc(*args): return _coot.read_cif_data_with_phases_nfo_fc(*args) read_cif_data_with_phases_nfo_fc = _coot.read_cif_data_with_phases_nfo_fc def read_cif_data_with_phases_fo_alpha_calc(*args): return _coot.read_cif_data_with_phases_fo_alpha_calc(*args) read_cif_data_with_phases_fo_alpha_calc = _coot.read_cif_data_with_phases_fo_alpha_calc def handle_cif_dictionary(*args): return _coot.handle_cif_dictionary(*args) handle_cif_dictionary = _coot.handle_cif_dictionary def read_cif_dictionary(*args): return _coot.read_cif_dictionary(*args) read_cif_dictionary = _coot.read_cif_dictionary def write_connectivity(*args): return _coot.write_connectivity(*args) write_connectivity = _coot.write_connectivity def open_cif_dictionary_file_selector_dialog(): return _coot.open_cif_dictionary_file_selector_dialog() open_cif_dictionary_file_selector_dialog = _coot.open_cif_dictionary_file_selector_dialog def non_standard_residue_names_py(*args): return _coot.non_standard_residue_names_py(*args) non_standard_residue_names_py = _coot.non_standard_residue_names_py def import_all_refmac_cifs(): return _coot.import_all_refmac_cifs() import_all_refmac_cifs = _coot.import_all_refmac_cifs def read_small_molecule_cif(*args): return _coot.read_small_molecule_cif(*args) read_small_molecule_cif = _coot.read_small_molecule_cif def read_small_molecule_data_cif(*args): return _coot.read_small_molecule_data_cif(*args) read_small_molecule_data_cif = _coot.read_small_molecule_data_cif def read_shelx_ins_file(*args): return _coot.read_shelx_ins_file(*args) read_shelx_ins_file = _coot.read_shelx_ins_file def write_shelx_ins_file(*args): return _coot.write_shelx_ins_file(*args) write_shelx_ins_file = _coot.write_shelx_ins_file def handle_shelx_fcf_file_internal(*args): return _coot.handle_shelx_fcf_file_internal(*args) handle_shelx_fcf_file_internal = _coot.handle_shelx_fcf_file_internal def is_shelx_molecule(*args): return _coot.is_shelx_molecule(*args) is_shelx_molecule = _coot.is_shelx_molecule def chain_id_for_shelxl_residue_number_py(*args): return _coot.chain_id_for_shelxl_residue_number_py(*args) chain_id_for_shelxl_residue_number_py = _coot.chain_id_for_shelxl_residue_number_py def add_shelx_string_to_molecule(*args): return _coot.add_shelx_string_to_molecule(*args) add_shelx_string_to_molecule = _coot.add_shelx_string_to_molecule def deviant_geometry(*args): return _coot.deviant_geometry(*args) deviant_geometry = _coot.deviant_geometry def is_valid_model_molecule(*args): return _coot.is_valid_model_molecule(*args) is_valid_model_molecule = _coot.is_valid_model_molecule def is_valid_map_molecule(*args): return _coot.is_valid_map_molecule(*args) is_valid_map_molecule = _coot.is_valid_map_molecule def difference_map_peaks(*args): return _coot.difference_map_peaks(*args) difference_map_peaks = _coot.difference_map_peaks def set_difference_map_peaks_max_closeness(*args): return _coot.set_difference_map_peaks_max_closeness(*args) set_difference_map_peaks_max_closeness = _coot.set_difference_map_peaks_max_closeness def difference_map_peaks_max_closeness(): return _coot.difference_map_peaks_max_closeness() difference_map_peaks_max_closeness = _coot.difference_map_peaks_max_closeness def clear_diff_map_peaks(): return _coot.clear_diff_map_peaks() clear_diff_map_peaks = _coot.clear_diff_map_peaks def gln_asn_b_factor_outliers(*args): return _coot.gln_asn_b_factor_outliers(*args) gln_asn_b_factor_outliers = _coot.gln_asn_b_factor_outliers def gln_asn_b_factor_outliers_py(*args): return _coot.gln_asn_b_factor_outliers_py(*args) gln_asn_b_factor_outliers_py = _coot.gln_asn_b_factor_outliers_py def map_peaks_py(*args): return _coot.map_peaks_py(*args) map_peaks_py = _coot.map_peaks_py def map_peaks_near_point_py(*args): return _coot.map_peaks_near_point_py(*args) map_peaks_near_point_py = _coot.map_peaks_near_point_py def map_peaks_near_point_from_list_py(*args): return _coot.map_peaks_near_point_from_list_py(*args) map_peaks_near_point_from_list_py = _coot.map_peaks_near_point_from_list_py def screen_vectors_py(): return _coot.screen_vectors_py() screen_vectors_py = _coot.screen_vectors_py def get_torsion_py(*args): return _coot.get_torsion_py(*args) get_torsion_py = _coot.get_torsion_py def set_torsion_py(*args): return _coot.set_torsion_py(*args) set_torsion_py = _coot.set_torsion_py def multi_residue_torsion_py(*args): return _coot.multi_residue_torsion_py(*args) multi_residue_torsion_py = _coot.multi_residue_torsion_py def clear_multi_residue_torsion_mode(): return _coot.clear_multi_residue_torsion_mode() clear_multi_residue_torsion_mode = _coot.clear_multi_residue_torsion_mode def set_multi_residue_torsion_reverse_mode(*args): return _coot.set_multi_residue_torsion_reverse_mode(*args) set_multi_residue_torsion_reverse_mode = _coot.set_multi_residue_torsion_reverse_mode def show_multi_residue_torsion_dialog(): return _coot.show_multi_residue_torsion_dialog() show_multi_residue_torsion_dialog = _coot.show_multi_residue_torsion_dialog def setup_multi_residue_torsion(): return _coot.setup_multi_residue_torsion() setup_multi_residue_torsion = _coot.setup_multi_residue_torsion def do_ramachandran_plot(*args): return _coot.do_ramachandran_plot(*args) do_ramachandran_plot = _coot.do_ramachandran_plot def set_kleywegt_plot_n_diffs(*args): return _coot.set_kleywegt_plot_n_diffs(*args) set_kleywegt_plot_n_diffs = _coot.set_kleywegt_plot_n_diffs def add_on_rama_choices(): return _coot.add_on_rama_choices() add_on_rama_choices = _coot.add_on_rama_choices def set_ramachandran_plot_contour_levels(*args): return _coot.set_ramachandran_plot_contour_levels(*args) set_ramachandran_plot_contour_levels = _coot.set_ramachandran_plot_contour_levels def set_ramachandran_plot_background_block_size(*args): return _coot.set_ramachandran_plot_background_block_size(*args) set_ramachandran_plot_background_block_size = _coot.set_ramachandran_plot_background_block_size def set_moving_atoms(*args): return _coot.set_moving_atoms(*args) set_moving_atoms = _coot.set_moving_atoms def accept_phi_psi_moving_atoms(): return _coot.accept_phi_psi_moving_atoms() accept_phi_psi_moving_atoms = _coot.accept_phi_psi_moving_atoms def setup_edit_phi_psi(*args): return _coot.setup_edit_phi_psi(*args) setup_edit_phi_psi = _coot.setup_edit_phi_psi def setup_dynamic_distances(*args): return _coot.setup_dynamic_distances(*args) setup_dynamic_distances = _coot.setup_dynamic_distances def destroy_edit_backbone_rama_plot(): return _coot.destroy_edit_backbone_rama_plot() destroy_edit_backbone_rama_plot = _coot.destroy_edit_backbone_rama_plot def ramachandran_plot_differences(*args): return _coot.ramachandran_plot_differences(*args) ramachandran_plot_differences = _coot.ramachandran_plot_differences def ramachandran_plot_differences_by_chain(*args): return _coot.ramachandran_plot_differences_by_chain(*args) ramachandran_plot_differences_by_chain = _coot.ramachandran_plot_differences_by_chain def do_sequence_view(*args): return _coot.do_sequence_view(*args) do_sequence_view = _coot.do_sequence_view def add_on_sequence_view_choices(): return _coot.add_on_sequence_view_choices() add_on_sequence_view_choices = _coot.add_on_sequence_view_choices def change_peptide_carbonyl_by(*args): return _coot.change_peptide_carbonyl_by(*args) change_peptide_carbonyl_by = _coot.change_peptide_carbonyl_by def change_peptide_peptide_by(*args): return _coot.change_peptide_peptide_by(*args) change_peptide_peptide_by = _coot.change_peptide_peptide_by def execute_setup_backbone_torsion_edit(*args): return _coot.execute_setup_backbone_torsion_edit(*args) execute_setup_backbone_torsion_edit = _coot.execute_setup_backbone_torsion_edit def setup_backbone_torsion_edit(*args): return _coot.setup_backbone_torsion_edit(*args) setup_backbone_torsion_edit = _coot.setup_backbone_torsion_edit def set_backbone_torsion_peptide_button_start_pos(*args): return _coot.set_backbone_torsion_peptide_button_start_pos(*args) set_backbone_torsion_peptide_button_start_pos = _coot.set_backbone_torsion_peptide_button_start_pos def change_peptide_peptide_by_current_button_pos(*args): return _coot.change_peptide_peptide_by_current_button_pos(*args) change_peptide_peptide_by_current_button_pos = _coot.change_peptide_peptide_by_current_button_pos def set_backbone_torsion_carbonyl_button_start_pos(*args): return _coot.set_backbone_torsion_carbonyl_button_start_pos(*args) set_backbone_torsion_carbonyl_button_start_pos = _coot.set_backbone_torsion_carbonyl_button_start_pos def change_peptide_carbonyl_by_current_button_pos(*args): return _coot.change_peptide_carbonyl_by_current_button_pos(*args) change_peptide_carbonyl_by_current_button_pos = _coot.change_peptide_carbonyl_by_current_button_pos def add_atom_label(*args): return _coot.add_atom_label(*args) add_atom_label = _coot.add_atom_label def remove_atom_label(*args): return _coot.remove_atom_label(*args) remove_atom_label = _coot.remove_atom_label def remove_all_atom_labels(): return _coot.remove_all_atom_labels() remove_all_atom_labels = _coot.remove_all_atom_labels def set_label_on_recentre_flag(*args): return _coot.set_label_on_recentre_flag(*args) set_label_on_recentre_flag = _coot.set_label_on_recentre_flag def centre_atom_label_status(): return _coot.centre_atom_label_status() centre_atom_label_status = _coot.centre_atom_label_status def set_brief_atom_labels(*args): return _coot.set_brief_atom_labels(*args) set_brief_atom_labels = _coot.set_brief_atom_labels def brief_atom_labels_state(): return _coot.brief_atom_labels_state() brief_atom_labels_state = _coot.brief_atom_labels_state def rotate_y_scene(*args): return _coot.rotate_y_scene(*args) rotate_y_scene = _coot.rotate_y_scene def rotate_x_scene(*args): return _coot.rotate_x_scene(*args) rotate_x_scene = _coot.rotate_x_scene def rotate_z_scene(*args): return _coot.rotate_z_scene(*args) rotate_z_scene = _coot.rotate_z_scene def spin_zoom_trans(*args): return _coot.spin_zoom_trans(*args) spin_zoom_trans = _coot.spin_zoom_trans def translate_scene_x(*args): return _coot.translate_scene_x(*args) translate_scene_x = _coot.translate_scene_x def translate_scene_y(*args): return _coot.translate_scene_y(*args) translate_scene_y = _coot.translate_scene_y def translate_scene_z(*args): return _coot.translate_scene_z(*args) translate_scene_z = _coot.translate_scene_z def add_view_here(*args): return _coot.add_view_here(*args) add_view_here = _coot.add_view_here def add_view_raw(*args): return _coot.add_view_raw(*args) add_view_raw = _coot.add_view_raw def play_views(): return _coot.play_views() play_views = _coot.play_views def remove_this_view(): return _coot.remove_this_view() remove_this_view = _coot.remove_this_view def remove_named_view(*args): return _coot.remove_named_view(*args) remove_named_view = _coot.remove_named_view def remove_view(*args): return _coot.remove_view(*args) remove_view = _coot.remove_view def go_to_first_view(*args): return _coot.go_to_first_view(*args) go_to_first_view = _coot.go_to_first_view def go_to_view_number(*args): return _coot.go_to_view_number(*args) go_to_view_number = _coot.go_to_view_number def add_spin_view(*args): return _coot.add_spin_view(*args) add_spin_view = _coot.add_spin_view def add_view_description(*args): return _coot.add_view_description(*args) add_view_description = _coot.add_view_description def add_action_view(*args): return _coot.add_action_view(*args) add_action_view = _coot.add_action_view def insert_action_view_after_view(*args): return _coot.insert_action_view_after_view(*args) insert_action_view_after_view = _coot.insert_action_view_after_view def n_views(): return _coot.n_views() n_views = _coot.n_views def save_views(*args): return _coot.save_views(*args) save_views = _coot.save_views def views_play_speed(): return _coot.views_play_speed() views_play_speed = _coot.views_play_speed def set_views_play_speed(*args): return _coot.set_views_play_speed(*args) set_views_play_speed = _coot.set_views_play_speed def view_name_py(*args): return _coot.view_name_py(*args) view_name_py = _coot.view_name_py def view_description_py(*args): return _coot.view_description_py(*args) view_description_py = _coot.view_description_py def go_to_view_py(*args): return _coot.go_to_view_py(*args) go_to_view_py = _coot.go_to_view_py def clear_all_views(): return _coot.clear_all_views() clear_all_views = _coot.clear_all_views def set_movie_file_name_prefix(*args): return _coot.set_movie_file_name_prefix(*args) set_movie_file_name_prefix = _coot.set_movie_file_name_prefix def set_movie_frame_number(*args): return _coot.set_movie_frame_number(*args) set_movie_frame_number = _coot.set_movie_frame_number def movie_file_name_prefix_py(): return _coot.movie_file_name_prefix_py() movie_file_name_prefix_py = _coot.movie_file_name_prefix_py def movie_frame_number(): return _coot.movie_frame_number() movie_frame_number = _coot.movie_frame_number def set_make_movie_mode(*args): return _coot.set_make_movie_mode(*args) set_make_movie_mode = _coot.set_make_movie_mode def set_background_colour(*args): return _coot.set_background_colour(*args) set_background_colour = _coot.set_background_colour def redraw_background(): return _coot.redraw_background() redraw_background = _coot.redraw_background def background_is_black_p(): return _coot.background_is_black_p() background_is_black_p = _coot.background_is_black_p def set_ligand_acceptable_fit_fraction(*args): return _coot.set_ligand_acceptable_fit_fraction(*args) set_ligand_acceptable_fit_fraction = _coot.set_ligand_acceptable_fit_fraction def set_ligand_cluster_sigma_level(*args): return _coot.set_ligand_cluster_sigma_level(*args) set_ligand_cluster_sigma_level = _coot.set_ligand_cluster_sigma_level def set_ligand_flexible_ligand_n_samples(*args): return _coot.set_ligand_flexible_ligand_n_samples(*args) set_ligand_flexible_ligand_n_samples = _coot.set_ligand_flexible_ligand_n_samples def set_ligand_verbose_reporting(*args): return _coot.set_ligand_verbose_reporting(*args) set_ligand_verbose_reporting = _coot.set_ligand_verbose_reporting def set_find_ligand_n_top_ligands(*args): return _coot.set_find_ligand_n_top_ligands(*args) set_find_ligand_n_top_ligands = _coot.set_find_ligand_n_top_ligands def set_find_ligand_multi_solutions_per_cluster(*args): return _coot.set_find_ligand_multi_solutions_per_cluster(*args) set_find_ligand_multi_solutions_per_cluster = _coot.set_find_ligand_multi_solutions_per_cluster def set_find_ligand_mask_waters(*args): return _coot.set_find_ligand_mask_waters(*args) set_find_ligand_mask_waters = _coot.set_find_ligand_mask_waters def set_ligand_search_protein_molecule(*args): return _coot.set_ligand_search_protein_molecule(*args) set_ligand_search_protein_molecule = _coot.set_ligand_search_protein_molecule def set_ligand_search_map_molecule(*args): return _coot.set_ligand_search_map_molecule(*args) set_ligand_search_map_molecule = _coot.set_ligand_search_map_molecule def add_ligand_search_ligand_molecule(*args): return _coot.add_ligand_search_ligand_molecule(*args) add_ligand_search_ligand_molecule = _coot.add_ligand_search_ligand_molecule def add_ligand_search_wiggly_ligand_molecule(*args): return _coot.add_ligand_search_wiggly_ligand_molecule(*args) add_ligand_search_wiggly_ligand_molecule = _coot.add_ligand_search_wiggly_ligand_molecule def set_find_ligand_here_cluster(*args): return _coot.set_find_ligand_here_cluster(*args) set_find_ligand_here_cluster = _coot.set_find_ligand_here_cluster def execute_ligand_search(): return _coot.execute_ligand_search() execute_ligand_search = _coot.execute_ligand_search def execute_ligand_search_py(): return _coot.execute_ligand_search_py() execute_ligand_search_py = _coot.execute_ligand_search_py def add_ligand_clear_ligands(): return _coot.add_ligand_clear_ligands() add_ligand_clear_ligands = _coot.add_ligand_clear_ligands def ligand_expert(): return _coot.ligand_expert() ligand_expert = _coot.ligand_expert def do_find_ligands_dialog(): return _coot.do_find_ligands_dialog() do_find_ligands_dialog = _coot.do_find_ligands_dialog def match_ligand_torsions(*args): return _coot.match_ligand_torsions(*args) match_ligand_torsions = _coot.match_ligand_torsions def overlap_ligands_py(*args): return _coot.overlap_ligands_py(*args) overlap_ligands_py = _coot.overlap_ligands_py def analyse_ligand_differences_py(*args): return _coot.analyse_ligand_differences_py(*args) analyse_ligand_differences_py = _coot.analyse_ligand_differences_py def compare_ligand_atom_types_py(*args): return _coot.compare_ligand_atom_types_py(*args) compare_ligand_atom_types_py = _coot.compare_ligand_atom_types_py def match_ligand_atom_names(*args): return _coot.match_ligand_atom_names(*args) match_ligand_atom_names = _coot.match_ligand_atom_names def exchange_ligand(*args): return _coot.exchange_ligand(*args) exchange_ligand = _coot.exchange_ligand def flip_ligand(*args): return _coot.flip_ligand(*args) flip_ligand = _coot.flip_ligand def jed_flip(*args): return _coot.jed_flip(*args) jed_flip = _coot.jed_flip def renumber_waters(*args): return _coot.renumber_waters(*args) renumber_waters = _coot.renumber_waters def execute_find_waters_real(*args): return _coot.execute_find_waters_real(*args) execute_find_waters_real = _coot.execute_find_waters_real def find_waters(*args): return _coot.find_waters(*args) find_waters = _coot.find_waters def move_waters_to_around_protein(*args): return _coot.move_waters_to_around_protein(*args) move_waters_to_around_protein = _coot.move_waters_to_around_protein def move_hetgroups_to_around_protein(*args): return _coot.move_hetgroups_to_around_protein(*args) move_hetgroups_to_around_protein = _coot.move_hetgroups_to_around_protein def max_water_distance(*args): return _coot.max_water_distance(*args) max_water_distance = _coot.max_water_distance def get_text_for_find_waters_sigma_cut_off(): return _coot.get_text_for_find_waters_sigma_cut_off() get_text_for_find_waters_sigma_cut_off = _coot.get_text_for_find_waters_sigma_cut_off def set_value_for_find_waters_sigma_cut_off(*args): return _coot.set_value_for_find_waters_sigma_cut_off(*args) set_value_for_find_waters_sigma_cut_off = _coot.set_value_for_find_waters_sigma_cut_off def set_water_check_spherical_variance_limit(*args): return _coot.set_water_check_spherical_variance_limit(*args) set_water_check_spherical_variance_limit = _coot.set_water_check_spherical_variance_limit def set_ligand_water_to_protein_distance_limits(*args): return _coot.set_ligand_water_to_protein_distance_limits(*args) set_ligand_water_to_protein_distance_limits = _coot.set_ligand_water_to_protein_distance_limits def set_ligand_water_n_cycles(*args): return _coot.set_ligand_water_n_cycles(*args) set_ligand_water_n_cycles = _coot.set_ligand_water_n_cycles def set_write_peaksearched_waters(): return _coot.set_write_peaksearched_waters() set_write_peaksearched_waters = _coot.set_write_peaksearched_waters def execute_find_blobs(*args): return _coot.execute_find_blobs(*args) execute_find_blobs = _coot.execute_find_blobs def split_water(*args): return _coot.split_water(*args) split_water = _coot.split_water def set_default_bond_thickness(*args): return _coot.set_default_bond_thickness(*args) set_default_bond_thickness = _coot.set_default_bond_thickness def set_bond_thickness(*args): return _coot.set_bond_thickness(*args) set_bond_thickness = _coot.set_bond_thickness def set_bond_thickness_intermediate_atoms(*args): return _coot.set_bond_thickness_intermediate_atoms(*args) set_bond_thickness_intermediate_atoms = _coot.set_bond_thickness_intermediate_atoms def set_bond_colour_rotation_for_molecule(*args): return _coot.set_bond_colour_rotation_for_molecule(*args) set_bond_colour_rotation_for_molecule = _coot.set_bond_colour_rotation_for_molecule def get_bond_colour_rotation_for_molecule(*args): return _coot.get_bond_colour_rotation_for_molecule(*args) get_bond_colour_rotation_for_molecule = _coot.get_bond_colour_rotation_for_molecule def set_unbonded_atom_star_size(*args): return _coot.set_unbonded_atom_star_size(*args) set_unbonded_atom_star_size = _coot.set_unbonded_atom_star_size def set_default_representation_type(*args): return _coot.set_default_representation_type(*args) set_default_representation_type = _coot.set_default_representation_type def get_default_bond_thickness(): return _coot.get_default_bond_thickness() get_default_bond_thickness = _coot.get_default_bond_thickness def set_draw_zero_occ_markers(*args): return _coot.set_draw_zero_occ_markers(*args) set_draw_zero_occ_markers = _coot.set_draw_zero_occ_markers def set_draw_cis_peptide_markups(*args): return _coot.set_draw_cis_peptide_markups(*args) set_draw_cis_peptide_markups = _coot.set_draw_cis_peptide_markups def set_draw_hydrogens(*args): return _coot.set_draw_hydrogens(*args) set_draw_hydrogens = _coot.set_draw_hydrogens def draw_hydrogens_state(*args): return _coot.draw_hydrogens_state(*args) draw_hydrogens_state = _coot.draw_hydrogens_state def set_draw_stick_mode_atoms(*args): return _coot.set_draw_stick_mode_atoms(*args) set_draw_stick_mode_atoms = _coot.set_draw_stick_mode_atoms def graphics_to_ca_representation(*args): return _coot.graphics_to_ca_representation(*args) graphics_to_ca_representation = _coot.graphics_to_ca_representation def graphics_to_ca_plus_ligands_representation(*args): return _coot.graphics_to_ca_plus_ligands_representation(*args) graphics_to_ca_plus_ligands_representation = _coot.graphics_to_ca_plus_ligands_representation def graphics_to_ca_plus_ligands_and_sidechains_representation(*args): return _coot.graphics_to_ca_plus_ligands_and_sidechains_representation(*args) graphics_to_ca_plus_ligands_and_sidechains_representation = _coot.graphics_to_ca_plus_ligands_and_sidechains_representation def graphics_to_bonds_no_waters_representation(*args): return _coot.graphics_to_bonds_no_waters_representation(*args) graphics_to_bonds_no_waters_representation = _coot.graphics_to_bonds_no_waters_representation def graphics_to_bonds_representation(*args): return _coot.graphics_to_bonds_representation(*args) graphics_to_bonds_representation = _coot.graphics_to_bonds_representation def graphics_to_ca_plus_ligands_sec_struct_representation(*args): return _coot.graphics_to_ca_plus_ligands_sec_struct_representation(*args) graphics_to_ca_plus_ligands_sec_struct_representation = _coot.graphics_to_ca_plus_ligands_sec_struct_representation def graphics_to_sec_struct_bonds_representation(*args): return _coot.graphics_to_sec_struct_bonds_representation(*args) graphics_to_sec_struct_bonds_representation = _coot.graphics_to_sec_struct_bonds_representation def graphics_to_rainbow_representation(*args): return _coot.graphics_to_rainbow_representation(*args) graphics_to_rainbow_representation = _coot.graphics_to_rainbow_representation def graphics_to_b_factor_representation(*args): return _coot.graphics_to_b_factor_representation(*args) graphics_to_b_factor_representation = _coot.graphics_to_b_factor_representation def graphics_to_b_factor_cas_representation(*args): return _coot.graphics_to_b_factor_cas_representation(*args) graphics_to_b_factor_cas_representation = _coot.graphics_to_b_factor_cas_representation def graphics_to_occupancy_representation(*args): return _coot.graphics_to_occupancy_representation(*args) graphics_to_occupancy_representation = _coot.graphics_to_occupancy_representation def graphics_molecule_bond_type(*args): return _coot.graphics_molecule_bond_type(*args) graphics_molecule_bond_type = _coot.graphics_molecule_bond_type def set_b_factor_bonds_scale_factor(*args): return _coot.set_b_factor_bonds_scale_factor(*args) set_b_factor_bonds_scale_factor = _coot.set_b_factor_bonds_scale_factor def change_model_molecule_representation_mode(*args): return _coot.change_model_molecule_representation_mode(*args) change_model_molecule_representation_mode = _coot.change_model_molecule_representation_mode def make_ball_and_stick(*args): return _coot.make_ball_and_stick(*args) make_ball_and_stick = _coot.make_ball_and_stick def clear_ball_and_stick(*args): return _coot.clear_ball_and_stick(*args) clear_ball_and_stick = _coot.clear_ball_and_stick def set_show_additional_representation(*args): return _coot.set_show_additional_representation(*args) set_show_additional_representation = _coot.set_show_additional_representation def set_show_all_additional_representations(*args): return _coot.set_show_all_additional_representations(*args) set_show_all_additional_representations = _coot.set_show_all_additional_representations def all_additional_representations_off_except(*args): return _coot.all_additional_representations_off_except(*args) all_additional_representations_off_except = _coot.all_additional_representations_off_except def delete_additional_representation(*args): return _coot.delete_additional_representation(*args) delete_additional_representation = _coot.delete_additional_representation def additional_representation_by_string(*args): return _coot.additional_representation_by_string(*args) additional_representation_by_string = _coot.additional_representation_by_string def additional_representation_by_attributes(*args): return _coot.additional_representation_by_attributes(*args) additional_representation_by_attributes = _coot.additional_representation_by_attributes def additional_representation_info_py(*args): return _coot.additional_representation_info_py(*args) additional_representation_info_py = _coot.additional_representation_info_py def set_flev_idle_ligand_interactions(*args): return _coot.set_flev_idle_ligand_interactions(*args) set_flev_idle_ligand_interactions = _coot.set_flev_idle_ligand_interactions def toggle_flev_idle_ligand_interactions(): return _coot.toggle_flev_idle_ligand_interactions() toggle_flev_idle_ligand_interactions = _coot.toggle_flev_idle_ligand_interactions def dots(*args): return _coot.dots(*args) dots = _coot.dots def set_dots_colour(*args): return _coot.set_dots_colour(*args) set_dots_colour = _coot.set_dots_colour def unset_dots_colour(*args): return _coot.unset_dots_colour(*args) unset_dots_colour = _coot.unset_dots_colour def clear_dots(*args): return _coot.clear_dots(*args) clear_dots = _coot.clear_dots def clear_dots_by_name(*args): return _coot.clear_dots_by_name(*args) clear_dots_by_name = _coot.clear_dots_by_name def n_dots_sets(*args): return _coot.n_dots_sets(*args) n_dots_sets = _coot.n_dots_sets def do_pepflip(*args): return _coot.do_pepflip(*args) do_pepflip = _coot.do_pepflip def pepflip(*args): return _coot.pepflip(*args) pepflip = _coot.pepflip def do_rigid_body_refine(*args): return _coot.do_rigid_body_refine(*args) do_rigid_body_refine = _coot.do_rigid_body_refine def rigid_body_refine_zone(*args): return _coot.rigid_body_refine_zone(*args) rigid_body_refine_zone = _coot.rigid_body_refine_zone def rigid_body_refine_by_atom_selection(*args): return _coot.rigid_body_refine_by_atom_selection(*args) rigid_body_refine_by_atom_selection = _coot.rigid_body_refine_by_atom_selection def rigid_body_refine_by_residue_ranges_py(*args): return _coot.rigid_body_refine_by_residue_ranges_py(*args) rigid_body_refine_by_residue_ranges_py = _coot.rigid_body_refine_by_residue_ranges_py def execute_rigid_body_refine(*args): return _coot.execute_rigid_body_refine(*args) execute_rigid_body_refine = _coot.execute_rigid_body_refine def set_rigid_body_fit_acceptable_fit_fraction(*args): return _coot.set_rigid_body_fit_acceptable_fit_fraction(*args) set_rigid_body_fit_acceptable_fit_fraction = _coot.set_rigid_body_fit_acceptable_fit_fraction def toggle_dynamic_map_display_size(): return _coot.toggle_dynamic_map_display_size() toggle_dynamic_map_display_size = _coot.toggle_dynamic_map_display_size def toggle_dynamic_map_sampling(): return _coot.toggle_dynamic_map_sampling() toggle_dynamic_map_sampling = _coot.toggle_dynamic_map_sampling def set_dynamic_map_size_display_on(): return _coot.set_dynamic_map_size_display_on() set_dynamic_map_size_display_on = _coot.set_dynamic_map_size_display_on def set_dynamic_map_size_display_off(): return _coot.set_dynamic_map_size_display_off() set_dynamic_map_size_display_off = _coot.set_dynamic_map_size_display_off def get_dynamic_map_size_display(): return _coot.get_dynamic_map_size_display() get_dynamic_map_size_display = _coot.get_dynamic_map_size_display def set_dynamic_map_sampling_on(): return _coot.set_dynamic_map_sampling_on() set_dynamic_map_sampling_on = _coot.set_dynamic_map_sampling_on def set_dynamic_map_sampling_off(): return _coot.set_dynamic_map_sampling_off() set_dynamic_map_sampling_off = _coot.set_dynamic_map_sampling_off def get_dynamic_map_sampling(): return _coot.get_dynamic_map_sampling() get_dynamic_map_sampling = _coot.get_dynamic_map_sampling def set_dynamic_map_zoom_offset(*args): return _coot.set_dynamic_map_zoom_offset(*args) set_dynamic_map_zoom_offset = _coot.set_dynamic_map_zoom_offset def do_add_terminal_residue(*args): return _coot.do_add_terminal_residue(*args) do_add_terminal_residue = _coot.do_add_terminal_residue def set_add_terminal_residue_n_phi_psi_trials(*args): return _coot.set_add_terminal_residue_n_phi_psi_trials(*args) set_add_terminal_residue_n_phi_psi_trials = _coot.set_add_terminal_residue_n_phi_psi_trials def set_add_terminal_residue_add_other_residue_flag(*args): return _coot.set_add_terminal_residue_add_other_residue_flag(*args) set_add_terminal_residue_add_other_residue_flag = _coot.set_add_terminal_residue_add_other_residue_flag def set_terminal_residue_do_rigid_body_refine(*args): return _coot.set_terminal_residue_do_rigid_body_refine(*args) set_terminal_residue_do_rigid_body_refine = _coot.set_terminal_residue_do_rigid_body_refine def add_terminal_residue_immediate_addition_state(): return _coot.add_terminal_residue_immediate_addition_state() add_terminal_residue_immediate_addition_state = _coot.add_terminal_residue_immediate_addition_state def set_add_terminal_residue_immediate_addition(*args): return _coot.set_add_terminal_residue_immediate_addition(*args) set_add_terminal_residue_immediate_addition = _coot.set_add_terminal_residue_immediate_addition def add_terminal_residue(*args): return _coot.add_terminal_residue(*args) add_terminal_residue = _coot.add_terminal_residue def add_terminal_residue_using_phi_psi(*args): return _coot.add_terminal_residue_using_phi_psi(*args) add_terminal_residue_using_phi_psi = _coot.add_terminal_residue_using_phi_psi def set_add_terminal_residue_default_residue_type(*args): return _coot.set_add_terminal_residue_default_residue_type(*args) set_add_terminal_residue_default_residue_type = _coot.set_add_terminal_residue_default_residue_type def set_add_terminal_residue_do_post_refine(*args): return _coot.set_add_terminal_residue_do_post_refine(*args) set_add_terminal_residue_do_post_refine = _coot.set_add_terminal_residue_do_post_refine def add_terminal_residue_do_post_refine_state(): return _coot.add_terminal_residue_do_post_refine_state() add_terminal_residue_do_post_refine_state = _coot.add_terminal_residue_do_post_refine_state def find_terminal_residue_type_py(*args): return _coot.find_terminal_residue_type_py(*args) find_terminal_residue_type_py = _coot.find_terminal_residue_type_py def delete_atom_by_atom_index(*args): return _coot.delete_atom_by_atom_index(*args) delete_atom_by_atom_index = _coot.delete_atom_by_atom_index def delete_residue_by_atom_index(*args): return _coot.delete_residue_by_atom_index(*args) delete_residue_by_atom_index = _coot.delete_residue_by_atom_index def delete_residue_hydrogens_by_atom_index(*args): return _coot.delete_residue_hydrogens_by_atom_index(*args) delete_residue_hydrogens_by_atom_index = _coot.delete_residue_hydrogens_by_atom_index def delete_residue_range(*args): return _coot.delete_residue_range(*args) delete_residue_range = _coot.delete_residue_range def delete_residue(*args): return _coot.delete_residue(*args) delete_residue = _coot.delete_residue def delete_residue_with_full_spec(*args): return _coot.delete_residue_with_full_spec(*args) delete_residue_with_full_spec = _coot.delete_residue_with_full_spec def delete_residue_hydrogens(*args): return _coot.delete_residue_hydrogens(*args) delete_residue_hydrogens = _coot.delete_residue_hydrogens def delete_atom(*args): return _coot.delete_atom(*args) delete_atom = _coot.delete_atom def delete_residue_sidechain(*args): return _coot.delete_residue_sidechain(*args) delete_residue_sidechain = _coot.delete_residue_sidechain def delete_hydrogens(*args): return _coot.delete_hydrogens(*args) delete_hydrogens = _coot.delete_hydrogens def set_delete_atom_mode(): return _coot.set_delete_atom_mode() set_delete_atom_mode = _coot.set_delete_atom_mode def set_delete_residue_mode(): return _coot.set_delete_residue_mode() set_delete_residue_mode = _coot.set_delete_residue_mode def set_delete_residue_zone_mode(): return _coot.set_delete_residue_zone_mode() set_delete_residue_zone_mode = _coot.set_delete_residue_zone_mode def set_delete_residue_hydrogens_mode(): return _coot.set_delete_residue_hydrogens_mode() set_delete_residue_hydrogens_mode = _coot.set_delete_residue_hydrogens_mode def set_delete_water_mode(): return _coot.set_delete_water_mode() set_delete_water_mode = _coot.set_delete_water_mode def set_delete_sidechain_mode(): return _coot.set_delete_sidechain_mode() set_delete_sidechain_mode = _coot.set_delete_sidechain_mode def delete_item_mode_is_atom_p(): return _coot.delete_item_mode_is_atom_p() delete_item_mode_is_atom_p = _coot.delete_item_mode_is_atom_p def delete_item_mode_is_residue_p(): return _coot.delete_item_mode_is_residue_p() delete_item_mode_is_residue_p = _coot.delete_item_mode_is_residue_p def delete_item_mode_is_water_p(): return _coot.delete_item_mode_is_water_p() delete_item_mode_is_water_p = _coot.delete_item_mode_is_water_p def delete_item_mode_is_sidechain_p(): return _coot.delete_item_mode_is_sidechain_p() delete_item_mode_is_sidechain_p = _coot.delete_item_mode_is_sidechain_p def clear_pending_delete_item(): return _coot.clear_pending_delete_item() clear_pending_delete_item = _coot.clear_pending_delete_item def clear_delete_item_widget(): return _coot.clear_delete_item_widget() clear_delete_item_widget = _coot.clear_delete_item_widget def store_delete_item_widget_position(): return _coot.store_delete_item_widget_position() store_delete_item_widget_position = _coot.store_delete_item_widget_position def delete_item_widget_is_being_shown(): return _coot.delete_item_widget_is_being_shown() delete_item_widget_is_being_shown = _coot.delete_item_widget_is_being_shown def delete_item_widget_keep_active_on(): return _coot.delete_item_widget_keep_active_on() delete_item_widget_keep_active_on = _coot.delete_item_widget_keep_active_on def delete_object_handle_delete_dialog(*args): return _coot.delete_object_handle_delete_dialog(*args) delete_object_handle_delete_dialog = _coot.delete_object_handle_delete_dialog def do_rot_trans_setup(*args): return _coot.do_rot_trans_setup(*args) do_rot_trans_setup = _coot.do_rot_trans_setup def rot_trans_reset_previous(): return _coot.rot_trans_reset_previous() rot_trans_reset_previous = _coot.rot_trans_reset_previous def set_rotate_translate_zone_rotates_about_zone_centre(*args): return _coot.set_rotate_translate_zone_rotates_about_zone_centre(*args) set_rotate_translate_zone_rotates_about_zone_centre = _coot.set_rotate_translate_zone_rotates_about_zone_centre def set_rot_trans_object_type(*args): return _coot.set_rot_trans_object_type(*args) set_rot_trans_object_type = _coot.set_rot_trans_object_type def get_rot_trans_object_type(): return _coot.get_rot_trans_object_type() get_rot_trans_object_type = _coot.get_rot_trans_object_type def do_cis_trans_conversion_setup(*args): return _coot.do_cis_trans_conversion_setup(*args) do_cis_trans_conversion_setup = _coot.do_cis_trans_conversion_setup def cis_trans_convert(*args): return _coot.cis_trans_convert(*args) cis_trans_convert = _coot.cis_trans_convert def cis_peptides_py(*args): return _coot.cis_peptides_py(*args) cis_peptides_py = _coot.cis_peptides_py def do_db_main(*args): return _coot.do_db_main(*args) do_db_main = _coot.do_db_main def db_mainchain(*args): return _coot.db_mainchain(*args) db_mainchain = _coot.db_mainchain def close_molecule(*args): return _coot.close_molecule(*args) close_molecule = _coot.close_molecule def set_rotamer_search_mode(*args): return _coot.set_rotamer_search_mode(*args) set_rotamer_search_mode = _coot.set_rotamer_search_mode def rotamer_search_mode_state(): return _coot.rotamer_search_mode_state() rotamer_search_mode_state = _coot.rotamer_search_mode_state def setup_rotamers(*args): return _coot.setup_rotamers(*args) setup_rotamers = _coot.setup_rotamers def do_rotamers(*args): return _coot.do_rotamers(*args) do_rotamers = _coot.do_rotamers def show_rotamers_dialog(*args): return _coot.show_rotamers_dialog(*args) show_rotamers_dialog = _coot.show_rotamers_dialog def set_rotamer_lowest_probability(*args): return _coot.set_rotamer_lowest_probability(*args) set_rotamer_lowest_probability = _coot.set_rotamer_lowest_probability def set_rotamer_check_clashes(*args): return _coot.set_rotamer_check_clashes(*args) set_rotamer_check_clashes = _coot.set_rotamer_check_clashes def auto_fit_best_rotamer(*args): return _coot.auto_fit_best_rotamer(*args) auto_fit_best_rotamer = _coot.auto_fit_best_rotamer def set_auto_fit_best_rotamer_clash_flag(*args): return _coot.set_auto_fit_best_rotamer_clash_flag(*args) set_auto_fit_best_rotamer_clash_flag = _coot.set_auto_fit_best_rotamer_clash_flag def rotamer_score(*args): return _coot.rotamer_score(*args) rotamer_score = _coot.rotamer_score def setup_auto_fit_rotamer(*args): return _coot.setup_auto_fit_rotamer(*args) setup_auto_fit_rotamer = _coot.setup_auto_fit_rotamer def n_rotamers(*args): return _coot.n_rotamers(*args) n_rotamers = _coot.n_rotamers def set_residue_to_rotamer_number(*args): return _coot.set_residue_to_rotamer_number(*args) set_residue_to_rotamer_number = _coot.set_residue_to_rotamer_number def set_residue_to_rotamer_name(*args): return _coot.set_residue_to_rotamer_name(*args) set_residue_to_rotamer_name = _coot.set_residue_to_rotamer_name def get_rotamer_name_py(*args): return _coot.get_rotamer_name_py(*args) get_rotamer_name_py = _coot.get_rotamer_name_py def fill_partial_residues(*args): return _coot.fill_partial_residues(*args) fill_partial_residues = _coot.fill_partial_residues def fill_partial_residue(*args): return _coot.fill_partial_residue(*args) fill_partial_residue = _coot.fill_partial_residue def missing_atom_info_py(*args): return _coot.missing_atom_info_py(*args) missing_atom_info_py = _coot.missing_atom_info_py def rotamer_graphs_py(*args): return _coot.rotamer_graphs_py(*args) rotamer_graphs_py = _coot.rotamer_graphs_py def do_180_degree_side_chain_flip(*args): return _coot.do_180_degree_side_chain_flip(*args) do_180_degree_side_chain_flip = _coot.do_180_degree_side_chain_flip def setup_180_degree_flip(*args): return _coot.setup_180_degree_flip(*args) setup_180_degree_flip = _coot.setup_180_degree_flip def setup_mutate(*args): return _coot.setup_mutate(*args) setup_mutate = _coot.setup_mutate def setup_mutate_auto_fit(*args): return _coot.setup_mutate_auto_fit(*args) setup_mutate_auto_fit = _coot.setup_mutate_auto_fit def do_mutation(*args): return _coot.do_mutation(*args) do_mutation = _coot.do_mutation def progressive_residues_in_chain_check(*args): return _coot.progressive_residues_in_chain_check(*args) progressive_residues_in_chain_check = _coot.progressive_residues_in_chain_check def mutate(*args): return _coot.mutate(*args) mutate = _coot.mutate def mutate_base(*args): return _coot.mutate_base(*args) mutate_base = _coot.mutate_base def nudge_residue_sequence(*args): return _coot.nudge_residue_sequence(*args) nudge_residue_sequence = _coot.nudge_residue_sequence def set_mutate_auto_fit_do_post_refine(*args): return _coot.set_mutate_auto_fit_do_post_refine(*args) set_mutate_auto_fit_do_post_refine = _coot.set_mutate_auto_fit_do_post_refine def mutate_auto_fit_do_post_refine_state(): return _coot.mutate_auto_fit_do_post_refine_state() mutate_auto_fit_do_post_refine_state = _coot.mutate_auto_fit_do_post_refine_state def set_rotamer_auto_fit_do_post_refine(*args): return _coot.set_rotamer_auto_fit_do_post_refine(*args) set_rotamer_auto_fit_do_post_refine = _coot.set_rotamer_auto_fit_do_post_refine def rotamer_auto_fit_do_post_refine_state(): return _coot.rotamer_auto_fit_do_post_refine_state() rotamer_auto_fit_do_post_refine_state = _coot.rotamer_auto_fit_do_post_refine_state def mutate_single_residue_by_serial_number(*args): return _coot.mutate_single_residue_by_serial_number(*args) mutate_single_residue_by_serial_number = _coot.mutate_single_residue_by_serial_number def mutate_single_residue_by_seqno(*args): return _coot.mutate_single_residue_by_seqno(*args) mutate_single_residue_by_seqno = _coot.mutate_single_residue_by_seqno def do_base_mutation(*args): return _coot.do_base_mutation(*args) do_base_mutation = _coot.do_base_mutation def set_residue_type_chooser_stub_state(*args): return _coot.set_residue_type_chooser_stub_state(*args) set_residue_type_chooser_stub_state = _coot.set_residue_type_chooser_stub_state def alt_conf_split_type_number(): return _coot.alt_conf_split_type_number() alt_conf_split_type_number = _coot.alt_conf_split_type_number def set_add_alt_conf_split_type_number(*args): return _coot.set_add_alt_conf_split_type_number(*args) set_add_alt_conf_split_type_number = _coot.set_add_alt_conf_split_type_number def add_alt_conf_py(*args): return _coot.add_alt_conf_py(*args) add_alt_conf_py = _coot.add_alt_conf_py def unset_add_alt_conf_dialog(): return _coot.unset_add_alt_conf_dialog() unset_add_alt_conf_dialog = _coot.unset_add_alt_conf_dialog def unset_add_alt_conf_define(): return _coot.unset_add_alt_conf_define() unset_add_alt_conf_define = _coot.unset_add_alt_conf_define def altconf(): return _coot.altconf() altconf = _coot.altconf def set_add_alt_conf_new_atoms_occupancy(*args): return _coot.set_add_alt_conf_new_atoms_occupancy(*args) set_add_alt_conf_new_atoms_occupancy = _coot.set_add_alt_conf_new_atoms_occupancy def get_add_alt_conf_new_atoms_occupancy(): return _coot.get_add_alt_conf_new_atoms_occupancy() get_add_alt_conf_new_atoms_occupancy = _coot.get_add_alt_conf_new_atoms_occupancy def set_show_alt_conf_intermediate_atoms(*args): return _coot.set_show_alt_conf_intermediate_atoms(*args) set_show_alt_conf_intermediate_atoms = _coot.set_show_alt_conf_intermediate_atoms def show_alt_conf_intermediate_atoms_state(): return _coot.show_alt_conf_intermediate_atoms_state() show_alt_conf_intermediate_atoms_state = _coot.show_alt_conf_intermediate_atoms_state def zero_occupancy_residue_range(*args): return _coot.zero_occupancy_residue_range(*args) zero_occupancy_residue_range = _coot.zero_occupancy_residue_range def fill_occupancy_residue_range(*args): return _coot.fill_occupancy_residue_range(*args) fill_occupancy_residue_range = _coot.fill_occupancy_residue_range def set_b_factor_residue_range(*args): return _coot.set_b_factor_residue_range(*args) set_b_factor_residue_range = _coot.set_b_factor_residue_range def reset_b_factor_residue_range(*args): return _coot.reset_b_factor_residue_range(*args) reset_b_factor_residue_range = _coot.reset_b_factor_residue_range def place_atom_at_pointer(): return _coot.place_atom_at_pointer() place_atom_at_pointer = _coot.place_atom_at_pointer def place_atom_at_pointer_by_window(): return _coot.place_atom_at_pointer_by_window() place_atom_at_pointer_by_window = _coot.place_atom_at_pointer_by_window def place_typed_atom_at_pointer(*args): return _coot.place_typed_atom_at_pointer(*args) place_typed_atom_at_pointer = _coot.place_typed_atom_at_pointer def set_pointer_atom_is_dummy(*args): return _coot.set_pointer_atom_is_dummy(*args) set_pointer_atom_is_dummy = _coot.set_pointer_atom_is_dummy def display_where_is_pointer(): return _coot.display_where_is_pointer() display_where_is_pointer = _coot.display_where_is_pointer def create_pointer_atom_molecule_maybe(): return _coot.create_pointer_atom_molecule_maybe() create_pointer_atom_molecule_maybe = _coot.create_pointer_atom_molecule_maybe def pointer_atom_molecule(): return _coot.pointer_atom_molecule() pointer_atom_molecule = _coot.pointer_atom_molecule def set_pointer_atom_molecule(*args): return _coot.set_pointer_atom_molecule(*args) set_pointer_atom_molecule = _coot.set_pointer_atom_molecule def set_baton_mode(*args): return _coot.set_baton_mode(*args) set_baton_mode = _coot.set_baton_mode def try_set_draw_baton(*args): return _coot.try_set_draw_baton(*args) try_set_draw_baton = _coot.try_set_draw_baton def accept_baton_position(): return _coot.accept_baton_position() accept_baton_position = _coot.accept_baton_position def baton_tip_try_another(): return _coot.baton_tip_try_another() baton_tip_try_another = _coot.baton_tip_try_another def baton_tip_previous(): return _coot.baton_tip_previous() baton_tip_previous = _coot.baton_tip_previous def shorten_baton(): return _coot.shorten_baton() shorten_baton = _coot.shorten_baton def lengthen_baton(): return _coot.lengthen_baton() lengthen_baton = _coot.lengthen_baton def baton_build_delete_last_residue(): return _coot.baton_build_delete_last_residue() baton_build_delete_last_residue = _coot.baton_build_delete_last_residue def set_baton_build_params(*args): return _coot.set_baton_build_params(*args) set_baton_build_params = _coot.set_baton_build_params def reverse_direction_of_fragment(*args): return _coot.reverse_direction_of_fragment(*args) reverse_direction_of_fragment = _coot.reverse_direction_of_fragment def setup_reverse_direction(*args): return _coot.setup_reverse_direction(*args) setup_reverse_direction = _coot.setup_reverse_direction def add_OXT_to_residue(*args): return _coot.add_OXT_to_residue(*args) add_OXT_to_residue = _coot.add_OXT_to_residue def set_draw_crosshairs(*args): return _coot.set_draw_crosshairs(*args) set_draw_crosshairs = _coot.set_draw_crosshairs def draw_crosshairs_state(): return _coot.draw_crosshairs_state() draw_crosshairs_state = _coot.draw_crosshairs_state def setup_edit_chi_angles(*args): return _coot.setup_edit_chi_angles(*args) setup_edit_chi_angles = _coot.setup_edit_chi_angles def rotate_chi(*args): return _coot.rotate_chi(*args) rotate_chi = _coot.rotate_chi def set_find_hydrogen_torsions(*args): return _coot.set_find_hydrogen_torsions(*args) set_find_hydrogen_torsions = _coot.set_find_hydrogen_torsions def set_graphics_edit_current_chi(*args): return _coot.set_graphics_edit_current_chi(*args) set_graphics_edit_current_chi = _coot.set_graphics_edit_current_chi def unset_moving_atom_move_chis(): return _coot.unset_moving_atom_move_chis() unset_moving_atom_move_chis = _coot.unset_moving_atom_move_chis def set_moving_atom_move_chis(): return _coot.set_moving_atom_move_chis() set_moving_atom_move_chis = _coot.set_moving_atom_move_chis def edit_chi_angles(*args): return _coot.edit_chi_angles(*args) edit_chi_angles = _coot.edit_chi_angles def set_show_chi_angle_bond(*args): return _coot.set_show_chi_angle_bond(*args) set_show_chi_angle_bond = _coot.set_show_chi_angle_bond def set_edit_chi_angles_reverse_fragment_state(*args): return _coot.set_edit_chi_angles_reverse_fragment_state(*args) set_edit_chi_angles_reverse_fragment_state = _coot.set_edit_chi_angles_reverse_fragment_state def setup_torsion_general(*args): return _coot.setup_torsion_general(*args) setup_torsion_general = _coot.setup_torsion_general def toggle_torsion_general_reverse(): return _coot.toggle_torsion_general_reverse() toggle_torsion_general_reverse = _coot.toggle_torsion_general_reverse def backrub_rotamer(*args): return _coot.backrub_rotamer(*args) backrub_rotamer = _coot.backrub_rotamer def mask_map_by_molecule(*args): return _coot.mask_map_by_molecule(*args) mask_map_by_molecule = _coot.mask_map_by_molecule def mask_map_by_atom_selection(*args): return _coot.mask_map_by_atom_selection(*args) mask_map_by_atom_selection = _coot.mask_map_by_atom_selection def set_map_mask_atom_radius(*args): return _coot.set_map_mask_atom_radius(*args) set_map_mask_atom_radius = _coot.set_map_mask_atom_radius def map_mask_atom_radius(): return _coot.map_mask_atom_radius() map_mask_atom_radius = _coot.map_mask_atom_radius def set_check_waters_b_factor_limit(*args): return _coot.set_check_waters_b_factor_limit(*args) set_check_waters_b_factor_limit = _coot.set_check_waters_b_factor_limit def set_check_waters_map_sigma_limit(*args): return _coot.set_check_waters_map_sigma_limit(*args) set_check_waters_map_sigma_limit = _coot.set_check_waters_map_sigma_limit def set_check_waters_min_dist_limit(*args): return _coot.set_check_waters_min_dist_limit(*args) set_check_waters_min_dist_limit = _coot.set_check_waters_min_dist_limit def set_check_waters_max_dist_limit(*args): return _coot.set_check_waters_max_dist_limit(*args) set_check_waters_max_dist_limit = _coot.set_check_waters_max_dist_limit def delete_checked_waters_baddies(*args): return _coot.delete_checked_waters_baddies(*args) delete_checked_waters_baddies = _coot.delete_checked_waters_baddies def check_waters_by_difference_map(*args): return _coot.check_waters_by_difference_map(*args) check_waters_by_difference_map = _coot.check_waters_by_difference_map def check_waters_by_difference_map_sigma_level_state(): return _coot.check_waters_by_difference_map_sigma_level_state() check_waters_by_difference_map_sigma_level_state = _coot.check_waters_by_difference_map_sigma_level_state def set_check_waters_by_difference_map_sigma_level(*args): return _coot.set_check_waters_by_difference_map_sigma_level(*args) set_check_waters_by_difference_map_sigma_level = _coot.set_check_waters_by_difference_map_sigma_level def highly_coordinated_waters_py(*args): return _coot.highly_coordinated_waters_py(*args) highly_coordinated_waters_py = _coot.highly_coordinated_waters_py def metal_coordination_py(*args): return _coot.metal_coordination_py(*args) metal_coordination_py = _coot.metal_coordination_py def clear_lsq_matches(): return _coot.clear_lsq_matches() clear_lsq_matches = _coot.clear_lsq_matches def add_lsq_match(*args): return _coot.add_lsq_match(*args) add_lsq_match = _coot.add_lsq_match def add_lsq_atom_pair_py(*args): return _coot.add_lsq_atom_pair_py(*args) add_lsq_atom_pair_py = _coot.add_lsq_atom_pair_py def apply_lsq_matches_py(*args): return _coot.apply_lsq_matches_py(*args) apply_lsq_matches_py = _coot.apply_lsq_matches_py def get_lsq_matrix_py(*args): return _coot.get_lsq_matrix_py(*args) get_lsq_matrix_py = _coot.get_lsq_matrix_py def apply_lsq_matches_simple(*args): return _coot.apply_lsq_matches_simple(*args) apply_lsq_matches_simple = _coot.apply_lsq_matches_simple def setup_lsq_deviation(*args): return _coot.setup_lsq_deviation(*args) setup_lsq_deviation = _coot.setup_lsq_deviation def setup_lsq_plane_define(*args): return _coot.setup_lsq_plane_define(*args) setup_lsq_plane_define = _coot.setup_lsq_plane_define def unset_lsq_plane_dialog(): return _coot.unset_lsq_plane_dialog() unset_lsq_plane_dialog = _coot.unset_lsq_plane_dialog def remove_last_lsq_plane_atom(): return _coot.remove_last_lsq_plane_atom() remove_last_lsq_plane_atom = _coot.remove_last_lsq_plane_atom def trim_molecule_by_map(*args): return _coot.trim_molecule_by_map(*args) trim_molecule_by_map = _coot.trim_molecule_by_map def raster3d(*args): return _coot.raster3d(*args) raster3d = _coot.raster3d def povray(*args): return _coot.povray(*args) povray = _coot.povray def renderman(*args): return _coot.renderman(*args) renderman = _coot.renderman def make_image_raster3d(*args): return _coot.make_image_raster3d(*args) make_image_raster3d = _coot.make_image_raster3d def make_image_povray(*args): return _coot.make_image_povray(*args) make_image_povray = _coot.make_image_povray def make_image_raster3d_py(*args): return _coot.make_image_raster3d_py(*args) make_image_raster3d_py = _coot.make_image_raster3d_py def make_image_povray_py(*args): return _coot.make_image_povray_py(*args) make_image_povray_py = _coot.make_image_povray_py def set_raster3d_bond_thickness(*args): return _coot.set_raster3d_bond_thickness(*args) set_raster3d_bond_thickness = _coot.set_raster3d_bond_thickness def set_raster3d_atom_radius(*args): return _coot.set_raster3d_atom_radius(*args) set_raster3d_atom_radius = _coot.set_raster3d_atom_radius def set_raster3d_density_thickness(*args): return _coot.set_raster3d_density_thickness(*args) set_raster3d_density_thickness = _coot.set_raster3d_density_thickness def set_renderer_show_atoms(*args): return _coot.set_renderer_show_atoms(*args) set_renderer_show_atoms = _coot.set_renderer_show_atoms def set_raster3d_bone_thickness(*args): return _coot.set_raster3d_bone_thickness(*args) set_raster3d_bone_thickness = _coot.set_raster3d_bone_thickness def set_raster3d_shadows_enabled(*args): return _coot.set_raster3d_shadows_enabled(*args) set_raster3d_shadows_enabled = _coot.set_raster3d_shadows_enabled def set_raster3d_water_sphere(*args): return _coot.set_raster3d_water_sphere(*args) set_raster3d_water_sphere = _coot.set_raster3d_water_sphere def raster_screen_shot(): return _coot.raster_screen_shot() raster_screen_shot = _coot.raster_screen_shot def raster_screen_shot_py(): return _coot.raster_screen_shot_py() raster_screen_shot_py = _coot.raster_screen_shot_py def citation_notice_off(): return _coot.citation_notice_off() citation_notice_off = _coot.citation_notice_off def superpose(*args): return _coot.superpose(*args) superpose = _coot.superpose def superpose_with_chain_selection(*args): return _coot.superpose_with_chain_selection(*args) superpose_with_chain_selection = _coot.superpose_with_chain_selection def superpose_with_atom_selection(*args): return _coot.superpose_with_atom_selection(*args) superpose_with_atom_selection = _coot.superpose_with_atom_selection def set_draw_ncs_ghosts(*args): return _coot.set_draw_ncs_ghosts(*args) set_draw_ncs_ghosts = _coot.set_draw_ncs_ghosts def draw_ncs_ghosts_state(*args): return _coot.draw_ncs_ghosts_state(*args) draw_ncs_ghosts_state = _coot.draw_ncs_ghosts_state def set_ncs_ghost_bond_thickness(*args): return _coot.set_ncs_ghost_bond_thickness(*args) set_ncs_ghost_bond_thickness = _coot.set_ncs_ghost_bond_thickness def ncs_update_ghosts(*args): return _coot.ncs_update_ghosts(*args) ncs_update_ghosts = _coot.ncs_update_ghosts def make_dynamically_transformed_ncs_maps(*args): return _coot.make_dynamically_transformed_ncs_maps(*args) make_dynamically_transformed_ncs_maps = _coot.make_dynamically_transformed_ncs_maps def make_ncs_ghosts_maybe(*args): return _coot.make_ncs_ghosts_maybe(*args) make_ncs_ghosts_maybe = _coot.make_ncs_ghosts_maybe def add_ncs_matrix(*args): return _coot.add_ncs_matrix(*args) add_ncs_matrix = _coot.add_ncs_matrix def clear_ncs_ghost_matrices(*args): return _coot.clear_ncs_ghost_matrices(*args) clear_ncs_ghost_matrices = _coot.clear_ncs_ghost_matrices def add_strict_ncs_matrix(*args): return _coot.add_strict_ncs_matrix(*args) add_strict_ncs_matrix = _coot.add_strict_ncs_matrix def add_strict_ncs_from_mtrix_from_self_file(*args): return _coot.add_strict_ncs_from_mtrix_from_self_file(*args) add_strict_ncs_from_mtrix_from_self_file = _coot.add_strict_ncs_from_mtrix_from_self_file def show_strict_ncs_state(*args): return _coot.show_strict_ncs_state(*args) show_strict_ncs_state = _coot.show_strict_ncs_state def set_show_strict_ncs(*args): return _coot.set_show_strict_ncs(*args) set_show_strict_ncs = _coot.set_show_strict_ncs def set_ncs_homology_level(*args): return _coot.set_ncs_homology_level(*args) set_ncs_homology_level = _coot.set_ncs_homology_level def copy_chain(*args): return _coot.copy_chain(*args) copy_chain = _coot.copy_chain def copy_from_ncs_master_to_others(*args): return _coot.copy_from_ncs_master_to_others(*args) copy_from_ncs_master_to_others = _coot.copy_from_ncs_master_to_others def copy_residue_range_from_ncs_master_to_others(*args): return _coot.copy_residue_range_from_ncs_master_to_others(*args) copy_residue_range_from_ncs_master_to_others = _coot.copy_residue_range_from_ncs_master_to_others def ncs_master_chains_py(*args): return _coot.ncs_master_chains_py(*args) ncs_master_chains_py = _coot.ncs_master_chains_py def copy_residue_range_from_ncs_master_to_chains_py(*args): return _coot.copy_residue_range_from_ncs_master_to_chains_py(*args) copy_residue_range_from_ncs_master_to_chains_py = _coot.copy_residue_range_from_ncs_master_to_chains_py def copy_from_ncs_master_to_chains_py(*args): return _coot.copy_from_ncs_master_to_chains_py(*args) copy_from_ncs_master_to_chains_py = _coot.copy_from_ncs_master_to_chains_py def ncs_control_change_ncs_master_to_chain(*args): return _coot.ncs_control_change_ncs_master_to_chain(*args) ncs_control_change_ncs_master_to_chain = _coot.ncs_control_change_ncs_master_to_chain def ncs_control_change_ncs_master_to_chain_id(*args): return _coot.ncs_control_change_ncs_master_to_chain_id(*args) ncs_control_change_ncs_master_to_chain_id = _coot.ncs_control_change_ncs_master_to_chain_id def ncs_control_display_chain(*args): return _coot.ncs_control_display_chain(*args) ncs_control_display_chain = _coot.ncs_control_display_chain def set_ncs_matrix_type(*args): return _coot.set_ncs_matrix_type(*args) set_ncs_matrix_type = _coot.set_ncs_matrix_type def get_ncs_matrix_state(): return _coot.get_ncs_matrix_state() get_ncs_matrix_state = _coot.get_ncs_matrix_state def ncs_chain_differences_py(*args): return _coot.ncs_chain_differences_py(*args) ncs_chain_differences_py = _coot.ncs_chain_differences_py def ncs_chain_ids_py(*args): return _coot.ncs_chain_ids_py(*args) ncs_chain_ids_py = _coot.ncs_chain_ids_py def ncs_ghosts_py(*args): return _coot.ncs_ghosts_py(*args) ncs_ghosts_py = _coot.ncs_ghosts_py FIND_SECSTRUC_NORMAL = _coot.FIND_SECSTRUC_NORMAL FIND_SECSTRUC_STRICT = _coot.FIND_SECSTRUC_STRICT FIND_SECSTRUC_HI_RES = _coot.FIND_SECSTRUC_HI_RES FIND_SECSTRUC_LO_RES = _coot.FIND_SECSTRUC_LO_RES def place_helix_here(): return _coot.place_helix_here() place_helix_here = _coot.place_helix_here def place_strand_here(*args): return _coot.place_strand_here(*args) place_strand_here = _coot.place_strand_here def set_place_helix_here_fudge_factor(*args): return _coot.set_place_helix_here_fudge_factor(*args) set_place_helix_here_fudge_factor = _coot.set_place_helix_here_fudge_factor def place_strand_here_dialog(): return _coot.place_strand_here_dialog() place_strand_here_dialog = _coot.place_strand_here_dialog def find_helices(): return _coot.find_helices() find_helices = _coot.find_helices def find_strands(): return _coot.find_strands() find_strands = _coot.find_strands def find_secondary_structure(*args): return _coot.find_secondary_structure(*args) find_secondary_structure = _coot.find_secondary_structure def find_secondary_structure_local(*args): return _coot.find_secondary_structure_local(*args) find_secondary_structure_local = _coot.find_secondary_structure_local def find_nucleic_acids_local(*args): return _coot.find_nucleic_acids_local(*args) find_nucleic_acids_local = _coot.find_nucleic_acids_local def new_molecule_by_residue_type_selection(*args): return _coot.new_molecule_by_residue_type_selection(*args) new_molecule_by_residue_type_selection = _coot.new_molecule_by_residue_type_selection def new_molecule_by_atom_selection(*args): return _coot.new_molecule_by_atom_selection(*args) new_molecule_by_atom_selection = _coot.new_molecule_by_atom_selection def new_molecule_by_sphere_selection(*args): return _coot.new_molecule_by_sphere_selection(*args) new_molecule_by_sphere_selection = _coot.new_molecule_by_sphere_selection def set_axis_orientation_matrix(*args): return _coot.set_axis_orientation_matrix(*args) set_axis_orientation_matrix = _coot.set_axis_orientation_matrix def set_axis_orientation_matrix_usage(*args): return _coot.set_axis_orientation_matrix_usage(*args) set_axis_orientation_matrix_usage = _coot.set_axis_orientation_matrix_usage def ideal_nucleic_acid(*args): return _coot.ideal_nucleic_acid(*args) ideal_nucleic_acid = _coot.ideal_nucleic_acid def pucker_info_py(*args): return _coot.pucker_info_py(*args) pucker_info_py = _coot.pucker_info_py def watson_crick_pair(*args): return _coot.watson_crick_pair(*args) watson_crick_pair = _coot.watson_crick_pair def watson_crick_pair_for_residue_range(*args): return _coot.watson_crick_pair_for_residue_range(*args) watson_crick_pair_for_residue_range = _coot.watson_crick_pair_for_residue_range def setup_base_pairing(*args): return _coot.setup_base_pairing(*args) setup_base_pairing = _coot.setup_base_pairing def print_sequence_chain(*args): return _coot.print_sequence_chain(*args) print_sequence_chain = _coot.print_sequence_chain def assign_fasta_sequence(*args): return _coot.assign_fasta_sequence(*args) assign_fasta_sequence = _coot.assign_fasta_sequence def assign_pir_sequence(*args): return _coot.assign_pir_sequence(*args) assign_pir_sequence = _coot.assign_pir_sequence def assign_sequence(*args): return _coot.assign_sequence(*args) assign_sequence = _coot.assign_sequence def assign_sequence_from_file(*args): return _coot.assign_sequence_from_file(*args) assign_sequence_from_file = _coot.assign_sequence_from_file def assign_sequence_from_string(*args): return _coot.assign_sequence_from_string(*args) assign_sequence_from_string = _coot.assign_sequence_from_string def delete_all_sequences_from_molecule(*args): return _coot.delete_all_sequences_from_molecule(*args) delete_all_sequences_from_molecule = _coot.delete_all_sequences_from_molecule def delete_sequence_by_chain_id(*args): return _coot.delete_sequence_by_chain_id(*args) delete_sequence_by_chain_id = _coot.delete_sequence_by_chain_id def sequence_info_py(*args): return _coot.sequence_info_py(*args) sequence_info_py = _coot.sequence_info_py def alignment_mismatches_py(*args): return _coot.alignment_mismatches_py(*args) alignment_mismatches_py = _coot.alignment_mismatches_py def do_surface(*args): return _coot.do_surface(*args) do_surface = _coot.do_surface def molecule_is_drawn_as_surface_int(*args): return _coot.molecule_is_drawn_as_surface_int(*args) molecule_is_drawn_as_surface_int = _coot.molecule_is_drawn_as_surface_int def do_clipped_surface_py(*args): return _coot.do_clipped_surface_py(*args) do_clipped_surface_py = _coot.do_clipped_surface_py def set_electrostatic_surface_charge_range(*args): return _coot.set_electrostatic_surface_charge_range(*args) set_electrostatic_surface_charge_range = _coot.set_electrostatic_surface_charge_range def get_electrostatic_surface_charge_range(): return _coot.get_electrostatic_surface_charge_range() get_electrostatic_surface_charge_range = _coot.get_electrostatic_surface_charge_range def set_transparent_electrostatic_surface(*args): return _coot.set_transparent_electrostatic_surface(*args) set_transparent_electrostatic_surface = _coot.set_transparent_electrostatic_surface def get_electrostatic_surface_opacity(*args): return _coot.get_electrostatic_surface_opacity(*args) get_electrostatic_surface_opacity = _coot.get_electrostatic_surface_opacity def fffear_search(*args): return _coot.fffear_search(*args) fffear_search = _coot.fffear_search def set_fffear_angular_resolution(*args): return _coot.set_fffear_angular_resolution(*args) set_fffear_angular_resolution = _coot.set_fffear_angular_resolution def fffear_angular_resolution(): return _coot.fffear_angular_resolution() fffear_angular_resolution = _coot.fffear_angular_resolution def make_socket_listener_maybe(): return _coot.make_socket_listener_maybe() make_socket_listener_maybe = _coot.make_socket_listener_maybe def set_coot_listener_socket_state_internal(*args): return _coot.set_coot_listener_socket_state_internal(*args) set_coot_listener_socket_state_internal = _coot.set_coot_listener_socket_state_internal def set_socket_string_waiting(*args): return _coot.set_socket_string_waiting(*args) set_socket_string_waiting = _coot.set_socket_string_waiting def set_socket_python_string_waiting(*args): return _coot.set_socket_python_string_waiting(*args) set_socket_python_string_waiting = _coot.set_socket_python_string_waiting def set_remote_control_port(*args): return _coot.set_remote_control_port(*args) set_remote_control_port = _coot.set_remote_control_port def get_remote_control_port_number(): return _coot.get_remote_control_port_number() get_remote_control_port_number = _coot.get_remote_control_port_number def set_tip_of_the_day_flag(*args): return _coot.set_tip_of_the_day_flag(*args) set_tip_of_the_day_flag = _coot.set_tip_of_the_day_flag def set_display_lists_for_maps(*args): return _coot.set_display_lists_for_maps(*args) set_display_lists_for_maps = _coot.set_display_lists_for_maps def display_lists_for_maps_state(): return _coot.display_lists_for_maps_state() display_lists_for_maps_state = _coot.display_lists_for_maps_state def update_maps(): return _coot.update_maps() update_maps = _coot.update_maps def browser_url(*args): return _coot.browser_url(*args) browser_url = _coot.browser_url def set_browser_interface(*args): return _coot.set_browser_interface(*args) set_browser_interface = _coot.set_browser_interface def handle_online_coot_search_request(*args): return _coot.handle_online_coot_search_request(*args) handle_online_coot_search_request = _coot.handle_online_coot_search_request def new_generic_object_number(*args): return _coot.new_generic_object_number(*args) new_generic_object_number = _coot.new_generic_object_number def to_generic_object_add_line(*args): return _coot.to_generic_object_add_line(*args) to_generic_object_add_line = _coot.to_generic_object_add_line def to_generic_object_add_dashed_line(*args): return _coot.to_generic_object_add_dashed_line(*args) to_generic_object_add_dashed_line = _coot.to_generic_object_add_dashed_line def to_generic_object_add_point(*args): return _coot.to_generic_object_add_point(*args) to_generic_object_add_point = _coot.to_generic_object_add_point def to_generic_object_add_arc(*args): return _coot.to_generic_object_add_arc(*args) to_generic_object_add_arc = _coot.to_generic_object_add_arc def to_generic_object_add_display_list_handle(*args): return _coot.to_generic_object_add_display_list_handle(*args) to_generic_object_add_display_list_handle = _coot.to_generic_object_add_display_list_handle def set_display_generic_object(*args): return _coot.set_display_generic_object(*args) set_display_generic_object = _coot.set_display_generic_object def set_display_all_generic_objects(*args): return _coot.set_display_all_generic_objects(*args) set_display_all_generic_objects = _coot.set_display_all_generic_objects def generic_object_is_displayed_p(*args): return _coot.generic_object_is_displayed_p(*args) generic_object_is_displayed_p = _coot.generic_object_is_displayed_p def generic_object_index(*args): return _coot.generic_object_index(*args) generic_object_index = _coot.generic_object_index def generic_object_name_py(*args): return _coot.generic_object_name_py(*args) generic_object_name_py = _coot.generic_object_name_py def number_of_generic_objects(): return _coot.number_of_generic_objects() number_of_generic_objects = _coot.number_of_generic_objects def generic_object_info(): return _coot.generic_object_info() generic_object_info = _coot.generic_object_info def generic_object_has_objects_p(*args): return _coot.generic_object_has_objects_p(*args) generic_object_has_objects_p = _coot.generic_object_has_objects_p def close_generic_object(*args): return _coot.close_generic_object(*args) close_generic_object = _coot.close_generic_object def is_closed_generic_object_p(*args): return _coot.is_closed_generic_object_p(*args) is_closed_generic_object_p = _coot.is_closed_generic_object_p def close_all_generic_objects(): return _coot.close_all_generic_objects() close_all_generic_objects = _coot.close_all_generic_objects def generic_object_clear(*args): return _coot.generic_object_clear(*args) generic_object_clear = _coot.generic_object_clear def generic_objects_gui_wrapper(): return _coot.generic_objects_gui_wrapper() generic_objects_gui_wrapper = _coot.generic_objects_gui_wrapper def set_display_generic_objects_as_solid(*args): return _coot.set_display_generic_objects_as_solid(*args) set_display_generic_objects_as_solid = _coot.set_display_generic_objects_as_solid def handle_read_draw_probe_dots(*args): return _coot.handle_read_draw_probe_dots(*args) handle_read_draw_probe_dots = _coot.handle_read_draw_probe_dots def handle_read_draw_probe_dots_unformatted(*args): return _coot.handle_read_draw_probe_dots_unformatted(*args) handle_read_draw_probe_dots_unformatted = _coot.handle_read_draw_probe_dots_unformatted def set_do_probe_dots_on_rotamers_and_chis(*args): return _coot.set_do_probe_dots_on_rotamers_and_chis(*args) set_do_probe_dots_on_rotamers_and_chis = _coot.set_do_probe_dots_on_rotamers_and_chis def do_probe_dots_on_rotamers_and_chis_state(): return _coot.do_probe_dots_on_rotamers_and_chis_state() do_probe_dots_on_rotamers_and_chis_state = _coot.do_probe_dots_on_rotamers_and_chis_state def set_do_probe_dots_post_refine(*args): return _coot.set_do_probe_dots_post_refine(*args) set_do_probe_dots_post_refine = _coot.set_do_probe_dots_post_refine def do_probe_dots_post_refine_state(): return _coot.do_probe_dots_post_refine_state() do_probe_dots_post_refine_state = _coot.do_probe_dots_post_refine_state def unmangle_hydrogen_name(*args): return _coot.unmangle_hydrogen_name(*args) unmangle_hydrogen_name = _coot.unmangle_hydrogen_name def set_interactive_probe_dots_molprobity_radius(*args): return _coot.set_interactive_probe_dots_molprobity_radius(*args) set_interactive_probe_dots_molprobity_radius = _coot.set_interactive_probe_dots_molprobity_radius def interactive_probe_dots_molprobity_radius(): return _coot.interactive_probe_dots_molprobity_radius() interactive_probe_dots_molprobity_radius = _coot.interactive_probe_dots_molprobity_radius def user_mods_py(*args): return _coot.user_mods_py(*args) user_mods_py = _coot.user_mods_py def sharpen(*args): return _coot.sharpen(*args) sharpen = _coot.sharpen def sharpen_with_gompertz_scaling(*args): return _coot.sharpen_with_gompertz_scaling(*args) sharpen_with_gompertz_scaling = _coot.sharpen_with_gompertz_scaling def set_map_sharpening_scale_limit(*args): return _coot.set_map_sharpening_scale_limit(*args) set_map_sharpening_scale_limit = _coot.set_map_sharpening_scale_limit def optimal_B_kurtosis(*args): return _coot.optimal_B_kurtosis(*args) optimal_B_kurtosis = _coot.optimal_B_kurtosis def drag_intermediate_atom_py(*args): return _coot.drag_intermediate_atom_py(*args) drag_intermediate_atom_py = _coot.drag_intermediate_atom_py def mark_atom_as_fixed_py(*args): return _coot.mark_atom_as_fixed_py(*args) mark_atom_as_fixed_py = _coot.mark_atom_as_fixed_py def mark_multiple_atoms_as_fixed_py(*args): return _coot.mark_multiple_atoms_as_fixed_py(*args) mark_multiple_atoms_as_fixed_py = _coot.mark_multiple_atoms_as_fixed_py def setup_fixed_atom_pick(*args): return _coot.setup_fixed_atom_pick(*args) setup_fixed_atom_pick = _coot.setup_fixed_atom_pick def clear_all_fixed_atoms(*args): return _coot.clear_all_fixed_atoms(*args) clear_all_fixed_atoms = _coot.clear_all_fixed_atoms def clear_fixed_atoms_all(): return _coot.clear_fixed_atoms_all() clear_fixed_atoms_all = _coot.clear_fixed_atoms_all def set_debug_atom_picking(*args): return _coot.set_debug_atom_picking(*args) set_debug_atom_picking = _coot.set_debug_atom_picking def show_partial_charge_info(*args): return _coot.show_partial_charge_info(*args) show_partial_charge_info = _coot.show_partial_charge_info def scale_cell(*args): return _coot.scale_cell(*args) scale_cell = _coot.scale_cell def segment_map(*args): return _coot.segment_map(*args) segment_map = _coot.segment_map def segment_map_multi_scale(*args): return _coot.segment_map_multi_scale(*args) segment_map_multi_scale = _coot.segment_map_multi_scale def map_histogram(*args): return _coot.map_histogram(*args) map_histogram = _coot.map_histogram def ccp4i_projects_py(): return _coot.ccp4i_projects_py() ccp4i_projects_py = _coot.ccp4i_projects_py def write_ccp4mg_picture_description(*args): return _coot.write_ccp4mg_picture_description(*args) write_ccp4mg_picture_description = _coot.write_ccp4mg_picture_description def get_atom_colour_from_mol_no(*args): return _coot.get_atom_colour_from_mol_no(*args) get_atom_colour_from_mol_no = _coot.get_atom_colour_from_mol_no def delete_dipole(*args): return _coot.delete_dipole(*args) delete_dipole = _coot.delete_dipole def add_dipole_py(*args): return _coot.add_dipole_py(*args) add_dipole_py = _coot.add_dipole_py def add_dipole_for_residues_py(*args): return _coot.add_dipole_for_residues_py(*args) add_dipole_for_residues_py = _coot.add_dipole_for_residues_py def make_and_draw_patterson(*args): return _coot.make_and_draw_patterson(*args) make_and_draw_patterson = _coot.make_and_draw_patterson def laplacian(*args): return _coot.laplacian(*args) laplacian = _coot.laplacian def get_pkgdatadir_py(): return _coot.get_pkgdatadir_py() get_pkgdatadir_py = _coot.get_pkgdatadir_py def do_smiles_gui(): return _coot.do_smiles_gui() do_smiles_gui = _coot.do_smiles_gui def do_tw(): return _coot.do_tw() do_tw = _coot.do_tw def set_button_label_for_external_refinement(*args): return _coot.set_button_label_for_external_refinement(*args) set_button_label_for_external_refinement = _coot.set_button_label_for_external_refinement def place_text(*args): return _coot.place_text(*args) place_text = _coot.place_text def remove_text(*args): return _coot.remove_text(*args) remove_text = _coot.remove_text def edit_text(*args): return _coot.edit_text(*args) edit_text = _coot.edit_text def text_index_near_position(*args): return _coot.text_index_near_position(*args) text_index_near_position = _coot.text_index_near_position def pisa_interaction(*args): return _coot.pisa_interaction(*args) pisa_interaction = _coot.pisa_interaction def handle_pisa_interfaces_py(*args): return _coot.handle_pisa_interfaces_py(*args) handle_pisa_interfaces_py = _coot.handle_pisa_interfaces_py def add_pisa_interface_bond_py(*args): return _coot.add_pisa_interface_bond_py(*args) add_pisa_interface_bond_py = _coot.add_pisa_interface_bond_py def pisa_clear_interfaces(): return _coot.pisa_clear_interfaces() pisa_clear_interfaces = _coot.pisa_clear_interfaces def fit_to_map_by_random_jiggle(*args): return _coot.fit_to_map_by_random_jiggle(*args) fit_to_map_by_random_jiggle = _coot.fit_to_map_by_random_jiggle def fit_molecule_to_map_by_random_jiggle(*args): return _coot.fit_molecule_to_map_by_random_jiggle(*args) fit_molecule_to_map_by_random_jiggle = _coot.fit_molecule_to_map_by_random_jiggle def fit_chain_to_map_by_random_jiggle(*args): return _coot.fit_chain_to_map_by_random_jiggle(*args) fit_chain_to_map_by_random_jiggle = _coot.fit_chain_to_map_by_random_jiggle def matching_compound_names_from_sbase_py(*args): return _coot.matching_compound_names_from_sbase_py(*args) matching_compound_names_from_sbase_py = _coot.matching_compound_names_from_sbase_py def get_ccp4srs_monomer_and_dictionary(*args): return _coot.get_ccp4srs_monomer_and_dictionary(*args) get_ccp4srs_monomer_and_dictionary = _coot.get_ccp4srs_monomer_and_dictionary def get_sbase_monomer(*args): return _coot.get_sbase_monomer(*args) get_sbase_monomer = _coot.get_sbase_monomer def add_linked_residue(*args): return _coot.add_linked_residue(*args) add_linked_residue = _coot.add_linked_residue def add_linked_residue_py(*args): return _coot.add_linked_residue_py(*args) add_linked_residue_py = _coot.add_linked_residue_py def set_add_linked_residue_do_fit_and_refine(*args): return _coot.set_add_linked_residue_do_fit_and_refine(*args) set_add_linked_residue_do_fit_and_refine = _coot.set_add_linked_residue_do_fit_and_refine def fle_view_internal(*args): return _coot.fle_view_internal(*args) fle_view_internal = _coot.fle_view_internal def fle_view_internal_to_png(*args): return _coot.fle_view_internal_to_png(*args) fle_view_internal_to_png = _coot.fle_view_internal_to_png def fle_view_with_rdkit(*args): return _coot.fle_view_with_rdkit(*args) fle_view_with_rdkit = _coot.fle_view_with_rdkit def fle_view_with_rdkit_to_png(*args): return _coot.fle_view_with_rdkit_to_png(*args) fle_view_with_rdkit_to_png = _coot.fle_view_with_rdkit_to_png def fle_view_with_rdkit_to_svg(*args): return _coot.fle_view_with_rdkit_to_svg(*args) fle_view_with_rdkit_to_svg = _coot.fle_view_with_rdkit_to_svg def fle_view_with_rdkit_internal(*args): return _coot.fle_view_with_rdkit_internal(*args) fle_view_with_rdkit_internal = _coot.fle_view_with_rdkit_internal def fle_view_set_water_dist_max(*args): return _coot.fle_view_set_water_dist_max(*args) fle_view_set_water_dist_max = _coot.fle_view_set_water_dist_max def fle_view_set_h_bond_dist_max(*args): return _coot.fle_view_set_h_bond_dist_max(*args) fle_view_set_h_bond_dist_max = _coot.fle_view_set_h_bond_dist_max def sprout_hydrogens(*args): return _coot.sprout_hydrogens(*args) sprout_hydrogens = _coot.sprout_hydrogens def lsq_improve(*args): return _coot.lsq_improve(*args) lsq_improve = _coot.lsq_improve def toolbar_multi_refine_stop(): return _coot.toolbar_multi_refine_stop() toolbar_multi_refine_stop = _coot.toolbar_multi_refine_stop def toolbar_multi_refine_continue(): return _coot.toolbar_multi_refine_continue() toolbar_multi_refine_continue = _coot.toolbar_multi_refine_continue def toolbar_multi_refine_cancel(): return _coot.toolbar_multi_refine_cancel() toolbar_multi_refine_cancel = _coot.toolbar_multi_refine_cancel def set_visible_toolbar_multi_refine_stop_button(*args): return _coot.set_visible_toolbar_multi_refine_stop_button(*args) set_visible_toolbar_multi_refine_stop_button = _coot.set_visible_toolbar_multi_refine_stop_button def set_visible_toolbar_multi_refine_continue_button(*args): return _coot.set_visible_toolbar_multi_refine_continue_button(*args) set_visible_toolbar_multi_refine_continue_button = _coot.set_visible_toolbar_multi_refine_continue_button def set_visible_toolbar_multi_refine_cancel_button(*args): return _coot.set_visible_toolbar_multi_refine_cancel_button(*args) set_visible_toolbar_multi_refine_cancel_button = _coot.set_visible_toolbar_multi_refine_cancel_button def toolbar_multi_refine_button_set_sensitive(*args): return _coot.toolbar_multi_refine_button_set_sensitive(*args) toolbar_multi_refine_button_set_sensitive = _coot.toolbar_multi_refine_button_set_sensitive def single_model_view_model_number(*args): return _coot.single_model_view_model_number(*args) single_model_view_model_number = _coot.single_model_view_model_number def single_model_view_this_model_number(*args): return _coot.single_model_view_this_model_number(*args) single_model_view_this_model_number = _coot.single_model_view_this_model_number def single_model_view_next_model_number(*args): return _coot.single_model_view_next_model_number(*args) single_model_view_next_model_number = _coot.single_model_view_next_model_number def single_model_view_prev_model_number(*args): return _coot.single_model_view_prev_model_number(*args) single_model_view_prev_model_number = _coot.single_model_view_prev_model_number def run_update_self_maybe(): return _coot.run_update_self_maybe() run_update_self_maybe = _coot.run_update_self_maybe def show_go_to_residue_keyboarding_mode_window(): return _coot.show_go_to_residue_keyboarding_mode_window() show_go_to_residue_keyboarding_mode_window = _coot.show_go_to_residue_keyboarding_mode_window def handle_go_to_residue_keyboarding_mode(*args): return _coot.handle_go_to_residue_keyboarding_mode(*args) handle_go_to_residue_keyboarding_mode = _coot.handle_go_to_residue_keyboarding_mode def set_show_graphics_ligand_view(*args): return _coot.set_show_graphics_ligand_view(*args) set_show_graphics_ligand_view = _coot.set_show_graphics_ligand_view def nsv(*args): return _coot.nsv(*args) nsv = _coot.nsv def set_nsv_canvas_pixel_limit(*args): return _coot.set_nsv_canvas_pixel_limit(*args) set_nsv_canvas_pixel_limit = _coot.set_nsv_canvas_pixel_limit def sequence_view_old_style(*args): return _coot.sequence_view_old_style(*args) sequence_view_old_style = _coot.sequence_view_old_style def add_ligand_builder_menu_item_maybe(): return _coot.add_ligand_builder_menu_item_maybe() add_ligand_builder_menu_item_maybe = _coot.add_ligand_builder_menu_item_maybe def start_ligand_builder_gui(): return _coot.start_ligand_builder_gui() start_ligand_builder_gui = _coot.start_ligand_builder_gui def all_molecule_rotamer_score_py(*args): return _coot.all_molecule_rotamer_score_py(*args) all_molecule_rotamer_score_py = _coot.all_molecule_rotamer_score_py def all_molecule_ramachandran_score_py(*args): return _coot.all_molecule_ramachandran_score_py(*args) all_molecule_ramachandran_score_py = _coot.all_molecule_ramachandran_score_py def all_molecule_ramachandran_region_py(*args): return _coot.all_molecule_ramachandran_region_py(*args) all_molecule_ramachandran_region_py = _coot.all_molecule_ramachandran_region_py def user_defined_click_py(*args): return _coot.user_defined_click_py(*args) user_defined_click_py = _coot.user_defined_click_py def full_screen(*args): return _coot.full_screen(*args) full_screen = _coot.full_screen def preferences(): return _coot.preferences() preferences = _coot.preferences def show_preferences(): return _coot.show_preferences() show_preferences = _coot.show_preferences def clear_preferences(): return _coot.clear_preferences() clear_preferences = _coot.clear_preferences def set_mark_cis_peptides_as_bad(*args): return _coot.set_mark_cis_peptides_as_bad(*args) set_mark_cis_peptides_as_bad = _coot.set_mark_cis_peptides_as_bad def show_mark_cis_peptides_as_bad_state(): return _coot.show_mark_cis_peptides_as_bad_state() show_mark_cis_peptides_as_bad_state = _coot.show_mark_cis_peptides_as_bad_state def show_hide_preferences_tabs(*args): return _coot.show_hide_preferences_tabs(*args) show_hide_preferences_tabs = _coot.show_hide_preferences_tabs def update_preference_gui(): return _coot.update_preference_gui() update_preference_gui = _coot.update_preference_gui def make_preferences_internal(): return _coot.make_preferences_internal() make_preferences_internal = _coot.make_preferences_internal def make_preferences_internal_default(): return _coot.make_preferences_internal_default() make_preferences_internal_default = _coot.make_preferences_internal_default def reset_preferences(): return _coot.reset_preferences() reset_preferences = _coot.reset_preferences def save_preferences(): return _coot.save_preferences() save_preferences = _coot.save_preferences def preferences_internal_change_value_int(*args): return _coot.preferences_internal_change_value_int(*args) preferences_internal_change_value_int = _coot.preferences_internal_change_value_int def preferences_internal_change_value_int2(*args): return _coot.preferences_internal_change_value_int2(*args) preferences_internal_change_value_int2 = _coot.preferences_internal_change_value_int2 def preferences_internal_change_value_float(*args): return _coot.preferences_internal_change_value_float(*args) preferences_internal_change_value_float = _coot.preferences_internal_change_value_float def preferences_internal_change_value_float3(*args): return _coot.preferences_internal_change_value_float3(*args) preferences_internal_change_value_float3 = _coot.preferences_internal_change_value_float3 def show_model_toolbar_icon(*args): return _coot.show_model_toolbar_icon(*args) show_model_toolbar_icon = _coot.show_model_toolbar_icon def hide_model_toolbar_icon(*args): return _coot.hide_model_toolbar_icon(*args) hide_model_toolbar_icon = _coot.hide_model_toolbar_icon def fill_preferences_model_toolbar_icons(*args): return _coot.fill_preferences_model_toolbar_icons(*args) fill_preferences_model_toolbar_icons = _coot.fill_preferences_model_toolbar_icons def update_model_toolbar_icons_menu(): return _coot.update_model_toolbar_icons_menu() update_model_toolbar_icons_menu = _coot.update_model_toolbar_icons_menu def show_main_toolbar_icon(*args): return _coot.show_main_toolbar_icon(*args) show_main_toolbar_icon = _coot.show_main_toolbar_icon def hide_main_toolbar_icon(*args): return _coot.hide_main_toolbar_icon(*args) hide_main_toolbar_icon = _coot.hide_main_toolbar_icon def fill_preferences_main_toolbar_icons(*args): return _coot.fill_preferences_main_toolbar_icons(*args) fill_preferences_main_toolbar_icons = _coot.fill_preferences_main_toolbar_icons def update_main_toolbar_icons_menu(): return _coot.update_main_toolbar_icons_menu() update_main_toolbar_icons_menu = _coot.update_main_toolbar_icons_menu def update_toolbar_icons_menu(*args): return _coot.update_toolbar_icons_menu(*args) update_toolbar_icons_menu = _coot.update_toolbar_icons_menu def preferences_internal_font_own_colour_flag(): return _coot.preferences_internal_font_own_colour_flag() preferences_internal_font_own_colour_flag = _coot.preferences_internal_font_own_colour_flag def add_initial_position_restraints(*args): return _coot.add_initial_position_restraints(*args) add_initial_position_restraints = _coot.add_initial_position_restraints def remove_initial_position_restraints(*args): return _coot.remove_initial_position_restraints(*args) remove_initial_position_restraints = _coot.remove_initial_position_restraints def make_ncs_maps(*args): return _coot.make_ncs_maps(*args) make_ncs_maps = _coot.make_ncs_maps class alias_path_t(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, alias_path_t, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, alias_path_t, name) __repr__ = _swig_repr __swig_setmethods__["index"] = _coot.alias_path_t_index_set __swig_getmethods__["index"] = _coot.alias_path_t_index_get if _newclass:index = _swig_property(_coot.alias_path_t_index_get, _coot.alias_path_t_index_set) __swig_setmethods__["s"] = _coot.alias_path_t_s_set __swig_getmethods__["s"] = _coot.alias_path_t_s_get if _newclass:s = _swig_property(_coot.alias_path_t_s_get, _coot.alias_path_t_s_set) __swig_setmethods__["flag"] = _coot.alias_path_t_flag_set __swig_getmethods__["flag"] = _coot.alias_path_t_flag_get if _newclass:flag = _swig_property(_coot.alias_path_t_flag_get, _coot.alias_path_t_flag_set) def __init__(self, *args): this = _coot.new_alias_path_t(*args) try: self.this.append(this) except: self.this = this __swig_destroy__ = _coot.delete_alias_path_t __del__ = lambda self : None; alias_path_t_swigregister = _coot.alias_path_t_swigregister alias_path_t_swigregister(alias_path_t) class pisa_interface_bond_info_t(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, pisa_interface_bond_info_t, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, pisa_interface_bond_info_t, name) __repr__ = _swig_repr def __init__(self): this = _coot.new_pisa_interface_bond_info_t() try: self.this.append(this) except: self.this = this __swig_setmethods__["n_h_bonds"] = _coot.pisa_interface_bond_info_t_n_h_bonds_set __swig_getmethods__["n_h_bonds"] = _coot.pisa_interface_bond_info_t_n_h_bonds_get if _newclass:n_h_bonds = _swig_property(_coot.pisa_interface_bond_info_t_n_h_bonds_get, _coot.pisa_interface_bond_info_t_n_h_bonds_set) __swig_setmethods__["n_salt_bridges"] = _coot.pisa_interface_bond_info_t_n_salt_bridges_set __swig_getmethods__["n_salt_bridges"] = _coot.pisa_interface_bond_info_t_n_salt_bridges_get if _newclass:n_salt_bridges = _swig_property(_coot.pisa_interface_bond_info_t_n_salt_bridges_get, _coot.pisa_interface_bond_info_t_n_salt_bridges_set) __swig_setmethods__["n_cov_bonds"] = _coot.pisa_interface_bond_info_t_n_cov_bonds_set __swig_getmethods__["n_cov_bonds"] = _coot.pisa_interface_bond_info_t_n_cov_bonds_get if _newclass:n_cov_bonds = _swig_property(_coot.pisa_interface_bond_info_t_n_cov_bonds_get, _coot.pisa_interface_bond_info_t_n_cov_bonds_set) __swig_setmethods__["n_ss_bonds"] = _coot.pisa_interface_bond_info_t_n_ss_bonds_set __swig_getmethods__["n_ss_bonds"] = _coot.pisa_interface_bond_info_t_n_ss_bonds_get if _newclass:n_ss_bonds = _swig_property(_coot.pisa_interface_bond_info_t_n_ss_bonds_get, _coot.pisa_interface_bond_info_t_n_ss_bonds_set) __swig_destroy__ = _coot.delete_pisa_interface_bond_info_t __del__ = lambda self : None; pisa_interface_bond_info_t_swigregister = _coot.pisa_interface_bond_info_t_swigregister pisa_interface_bond_info_t_swigregister(pisa_interface_bond_info_t) def get_pisa_interface_bond_info_py(*args): return _coot.get_pisa_interface_bond_info_py(*args) get_pisa_interface_bond_info_py = _coot.get_pisa_interface_bond_info_py def filtered_by_glob(*args): return _coot.filtered_by_glob(*args) filtered_by_glob = _coot.filtered_by_glob def string_member(*args): return _coot.string_member(*args) string_member = _coot.string_member def compare_strings(*args): return _coot.compare_strings(*args) compare_strings = _coot.compare_strings def pre_directory_file_selection(*args): return _coot.pre_directory_file_selection(*args) pre_directory_file_selection = _coot.pre_directory_file_selection def filelist_into_fileselection_clist(*args): return _coot.filelist_into_fileselection_clist(*args) filelist_into_fileselection_clist = _coot.filelist_into_fileselection_clist def wrapped_nothing_bad_dialog(*args): return _coot.wrapped_nothing_bad_dialog(*args) wrapped_nothing_bad_dialog = _coot.wrapped_nothing_bad_dialog def float_from_entry(*args): return _coot.float_from_entry(*args) float_from_entry = _coot.float_from_entry def int_from_entry(*args): return _coot.int_from_entry(*args) int_from_entry = _coot.int_from_entry def add_validation_mol_menu_item(*args): return _coot.add_validation_mol_menu_item(*args) add_validation_mol_menu_item = _coot.add_validation_mol_menu_item def create_initial_validation_graph_submenu_generic(*args): return _coot.create_initial_validation_graph_submenu_generic(*args) create_initial_validation_graph_submenu_generic = _coot.create_initial_validation_graph_submenu_generic def probe_dots_short_contact_name_to_expanded_name(*args): return _coot.probe_dots_short_contact_name_to_expanded_name(*args) probe_dots_short_contact_name_to_expanded_name = _coot.probe_dots_short_contact_name_to_expanded_name def menu_item_label(*args): return _coot.menu_item_label(*args) menu_item_label = _coot.menu_item_label def goto_next_atom_maybe_py(*args): return _coot.goto_next_atom_maybe_py(*args) goto_next_atom_maybe_py = _coot.goto_next_atom_maybe_py def goto_prev_atom_maybe_py(*args): return _coot.goto_prev_atom_maybe_py(*args) goto_prev_atom_maybe_py = _coot.goto_prev_atom_maybe_py def set_go_to_atom_from_spec(*args): return _coot.set_go_to_atom_from_spec(*args) set_go_to_atom_from_spec = _coot.set_go_to_atom_from_spec def set_go_to_atom_from_res_spec(*args): return _coot.set_go_to_atom_from_res_spec(*args) set_go_to_atom_from_res_spec = _coot.set_go_to_atom_from_res_spec def set_go_to_atom_from_res_spec_py(*args): return _coot.set_go_to_atom_from_res_spec_py(*args) set_go_to_atom_from_res_spec_py = _coot.set_go_to_atom_from_res_spec_py def active_atom_spec(): return _coot.active_atom_spec() active_atom_spec = _coot.active_atom_spec def active_atom_spec_py(): return _coot.active_atom_spec_py() active_atom_spec_py = _coot.active_atom_spec_py def get_symmetry_py(*args): return _coot.get_symmetry_py(*args) get_symmetry_py = _coot.get_symmetry_py def auto_read_make_and_draw_maps(*args): return _coot.auto_read_make_and_draw_maps(*args) auto_read_make_and_draw_maps = _coot.auto_read_make_and_draw_maps def auto_read_make_and_draw_maps_from_mtz(*args): return _coot.auto_read_make_and_draw_maps_from_mtz(*args) auto_read_make_and_draw_maps_from_mtz = _coot.auto_read_make_and_draw_maps_from_mtz def auto_read_make_and_draw_maps_from_cns(*args): return _coot.auto_read_make_and_draw_maps_from_cns(*args) auto_read_make_and_draw_maps_from_cns = _coot.auto_read_make_and_draw_maps_from_cns def add_map_colour_mol_menu_item(*args): return _coot.add_map_colour_mol_menu_item(*args) add_map_colour_mol_menu_item = _coot.add_map_colour_mol_menu_item def add_map_scroll_wheel_mol_menu_item(*args): return _coot.add_map_scroll_wheel_mol_menu_item(*args) add_map_scroll_wheel_mol_menu_item = _coot.add_map_scroll_wheel_mol_menu_item def map_colour_components_py(*args): return _coot.map_colour_components_py(*args) map_colour_components_py = _coot.map_colour_components_py def multi_residue_torsion_fit(*args): return _coot.multi_residue_torsion_fit(*args) multi_residue_torsion_fit = _coot.multi_residue_torsion_fit def multi_residue_torsion_fit_py(*args): return _coot.multi_residue_torsion_fit_py(*args) multi_residue_torsion_fit_py = _coot.multi_residue_torsion_fit_py def execute_refmac_real(*args): return _coot.execute_refmac_real(*args) execute_refmac_real = _coot.execute_refmac_real def refmac_name(*args): return _coot.refmac_name(*args) refmac_name = _coot.refmac_name class str_mtime(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, str_mtime, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, str_mtime, name) __repr__ = _swig_repr def __init__(self, *args): this = _coot.new_str_mtime(*args) try: self.this.append(this) except: self.this = this __swig_setmethods__["mtime"] = _coot.str_mtime_mtime_set __swig_getmethods__["mtime"] = _coot.str_mtime_mtime_get if _newclass:mtime = _swig_property(_coot.str_mtime_mtime_get, _coot.str_mtime_mtime_set) __swig_setmethods__["file"] = _coot.str_mtime_file_set __swig_getmethods__["file"] = _coot.str_mtime_file_get if _newclass:file = _swig_property(_coot.str_mtime_file_get, _coot.str_mtime_file_set) __swig_destroy__ = _coot.delete_str_mtime __del__ = lambda self : None; str_mtime_swigregister = _coot.str_mtime_swigregister str_mtime_swigregister(str_mtime) def set_rotation_centre(*args): return _coot.set_rotation_centre(*args) set_rotation_centre = _coot.set_rotation_centre class file_attribs_info_t(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, file_attribs_info_t, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, file_attribs_info_t, name) __repr__ = _swig_repr __swig_setmethods__["directory_prefix"] = _coot.file_attribs_info_t_directory_prefix_set __swig_getmethods__["directory_prefix"] = _coot.file_attribs_info_t_directory_prefix_get if _newclass:directory_prefix = _swig_property(_coot.file_attribs_info_t_directory_prefix_get, _coot.file_attribs_info_t_directory_prefix_set) __swig_setmethods__["file_mtimes"] = _coot.file_attribs_info_t_file_mtimes_set __swig_getmethods__["file_mtimes"] = _coot.file_attribs_info_t_file_mtimes_get if _newclass:file_mtimes = _swig_property(_coot.file_attribs_info_t_file_mtimes_get, _coot.file_attribs_info_t_file_mtimes_set) def __init__(self): this = _coot.new_file_attribs_info_t() try: self.this.append(this) except: self.this = this __swig_destroy__ = _coot.delete_file_attribs_info_t __del__ = lambda self : None; file_attribs_info_t_swigregister = _coot.file_attribs_info_t_swigregister file_attribs_info_t_swigregister(file_attribs_info_t) def compare_mtimes(*args): return _coot.compare_mtimes(*args) compare_mtimes = _coot.compare_mtimes def parse_ccp4i_defs(*args): return _coot.parse_ccp4i_defs(*args) parse_ccp4i_defs = _coot.parse_ccp4i_defs def ccp4_project_directory(*args): return _coot.ccp4_project_directory(*args) ccp4_project_directory = _coot.ccp4_project_directory def add_to_history(*args): return _coot.add_to_history(*args) add_to_history = _coot.add_to_history def add_to_history_simple(*args): return _coot.add_to_history_simple(*args) add_to_history_simple = _coot.add_to_history_simple def add_to_history_typed(*args): return _coot.add_to_history_typed(*args) add_to_history_typed = _coot.add_to_history_typed def single_quote(*args): return _coot.single_quote(*args) single_quote = _coot.single_quote def pythonize_command_name(*args): return _coot.pythonize_command_name(*args) pythonize_command_name = _coot.pythonize_command_name def schemize_command_name(*args): return _coot.schemize_command_name(*args) schemize_command_name = _coot.schemize_command_name def languagize_command(*args): return _coot.languagize_command(*args) languagize_command = _coot.languagize_command def add_to_database(*args): return _coot.add_to_database(*args) add_to_database = _coot.add_to_database def merge_molecules_by_vector(*args): return _coot.merge_molecules_by_vector(*args) merge_molecules_by_vector = _coot.merge_molecules_by_vector def dictionary_entries(): return _coot.dictionary_entries() dictionary_entries = _coot.dictionary_entries def SMILES_for_comp_id(*args): return _coot.SMILES_for_comp_id(*args) SMILES_for_comp_id = _coot.SMILES_for_comp_id def dictionaries_read_py(): return _coot.dictionaries_read_py() dictionaries_read_py = _coot.dictionaries_read_py def cif_file_for_comp_id_py(*args): return _coot.cif_file_for_comp_id_py(*args) cif_file_for_comp_id_py = _coot.cif_file_for_comp_id_py def dictionary_entries_py(): return _coot.dictionary_entries_py() dictionary_entries_py = _coot.dictionary_entries_py def SMILES_for_comp_id_py(*args): return _coot.SMILES_for_comp_id_py(*args) SMILES_for_comp_id_py = _coot.SMILES_for_comp_id_py def monomer_restraints_py(*args): return _coot.monomer_restraints_py(*args) monomer_restraints_py = _coot.monomer_restraints_py def set_monomer_restraints_py(*args): return _coot.set_monomer_restraints_py(*args) set_monomer_restraints_py = _coot.set_monomer_restraints_py def list_nomenclature_errors_py(*args): return _coot.list_nomenclature_errors_py(*args) list_nomenclature_errors_py = _coot.list_nomenclature_errors_py def show_fix_nomenclature_errors_gui(*args): return _coot.show_fix_nomenclature_errors_gui(*args) show_fix_nomenclature_errors_gui = _coot.show_fix_nomenclature_errors_gui def dipole_to_py(*args): return _coot.dipole_to_py(*args) dipole_to_py = _coot.dipole_to_py def coot_has_guile(): return _coot.coot_has_guile() coot_has_guile = _coot.coot_has_guile def coot_can_do_lidia_p(): return _coot.coot_can_do_lidia_p() coot_can_do_lidia_p = _coot.coot_can_do_lidia_p def run_scheme_command(*args): return _coot.run_scheme_command(*args) run_scheme_command = _coot.run_scheme_command def pyrun_simple_string(*args): return _coot.pyrun_simple_string(*args) pyrun_simple_string = _coot.pyrun_simple_string def py_residue(*args): return _coot.py_residue(*args) py_residue = _coot.py_residue def residue_spec_from_py(*args): return _coot.residue_spec_from_py(*args) residue_spec_from_py = _coot.residue_spec_from_py def get_residue_by_type(*args): return _coot.get_residue_by_type(*args) get_residue_by_type = _coot.get_residue_by_type def get_residue_by_type_py(*args): return _coot.get_residue_by_type_py(*args) get_residue_by_type_py = _coot.get_residue_by_type_py def resname_from_serial_number(*args): return _coot.resname_from_serial_number(*args) resname_from_serial_number = _coot.resname_from_serial_number def residue_name(*args): return _coot.residue_name(*args) residue_name = _coot.residue_name def hydrogenate_region(*args): return _coot.hydrogenate_region(*args) hydrogenate_region = _coot.hydrogenate_region def add_hydrogens_from_file(*args): return _coot.add_hydrogens_from_file(*args) add_hydrogens_from_file = _coot.add_hydrogens_from_file def atom_info_string_py(*args): return _coot.atom_info_string_py(*args) atom_info_string_py = _coot.atom_info_string_py def residue_info_py(*args): return _coot.residue_info_py(*args) residue_info_py = _coot.residue_info_py def residue_name_py(*args): return _coot.residue_name_py(*args) residue_name_py = _coot.residue_name_py def chain_fragments_py(*args): return _coot.chain_fragments_py(*args) chain_fragments_py = _coot.chain_fragments_py def clear_and_update_molecule_py(*args): return _coot.clear_and_update_molecule_py(*args) clear_and_update_molecule_py = _coot.clear_and_update_molecule_py def add_molecule_py(*args): return _coot.add_molecule_py(*args) add_molecule_py = _coot.add_molecule_py def active_residue_py(): return _coot.active_residue_py() active_residue_py = _coot.active_residue_py def closest_atom_py(*args): return _coot.closest_atom_py(*args) closest_atom_py = _coot.closest_atom_py def residues_near_residue_py(*args): return _coot.residues_near_residue_py(*args) residues_near_residue_py = _coot.residues_near_residue_py def residues_near_position_py(*args): return _coot.residues_near_position_py(*args) residues_near_position_py = _coot.residues_near_position_py def regularize_residues(*args): return _coot.regularize_residues(*args) regularize_residues = _coot.regularize_residues def mtz_file_name(*args): return _coot.mtz_file_name(*args) mtz_file_name = _coot.mtz_file_name def refine_zone_with_full_residue_spec_py(*args): return _coot.refine_zone_with_full_residue_spec_py(*args) refine_zone_with_full_residue_spec_py = _coot.refine_zone_with_full_residue_spec_py def rigid_body_fit_with_residue_ranges(*args): return _coot.rigid_body_fit_with_residue_ranges(*args) rigid_body_fit_with_residue_ranges = _coot.rigid_body_fit_with_residue_ranges def morph_fit_all(*args): return _coot.morph_fit_all(*args) morph_fit_all = _coot.morph_fit_all def morph_fit_chain(*args): return _coot.morph_fit_chain(*args) morph_fit_chain = _coot.morph_fit_chain def morph_fit_residues_py(*args): return _coot.morph_fit_residues_py(*args) morph_fit_residues_py = _coot.morph_fit_residues_py def morph_fit_residues(*args): return _coot.morph_fit_residues(*args) morph_fit_residues = _coot.morph_fit_residues def morph_fit_by_secondary_structure_elements(*args): return _coot.morph_fit_by_secondary_structure_elements(*args) morph_fit_by_secondary_structure_elements = _coot.morph_fit_by_secondary_structure_elements def check_waters_baddies(*args): return _coot.check_waters_baddies(*args) check_waters_baddies = _coot.check_waters_baddies def find_blobs(*args): return _coot.find_blobs(*args) find_blobs = _coot.find_blobs def find_blobs_py(*args): return _coot.find_blobs_py(*args) find_blobs_py = _coot.find_blobs_py def water_chain_from_shelx_ins_py(*args): return _coot.water_chain_from_shelx_ins_py(*args) water_chain_from_shelx_ins_py = _coot.water_chain_from_shelx_ins_py def water_chain_py(*args): return _coot.water_chain_py(*args) water_chain_py = _coot.water_chain_py def print_glyco_tree(*args): return _coot.print_glyco_tree(*args) print_glyco_tree = _coot.print_glyco_tree def make_variance_map(*args): return _coot.make_variance_map(*args) make_variance_map = _coot.make_variance_map def make_variance_map_py(*args): return _coot.make_variance_map_py(*args) make_variance_map_py = _coot.make_variance_map_py def spin_search_by_atom_vectors(*args): return _coot.spin_search_by_atom_vectors(*args) spin_search_by_atom_vectors = _coot.spin_search_by_atom_vectors def spin_search_py(*args): return _coot.spin_search_py(*args) spin_search_py = _coot.spin_search_py def monomer_lib_3_letter_codes_matching(*args): return _coot.monomer_lib_3_letter_codes_matching(*args) monomer_lib_3_letter_codes_matching = _coot.monomer_lib_3_letter_codes_matching def on_monomer_lib_search_results_button_press(*args): return _coot.on_monomer_lib_search_results_button_press(*args) on_monomer_lib_search_results_button_press = _coot.on_monomer_lib_search_results_button_press def on_monomer_lib_sbase_molecule_button_press(*args): return _coot.on_monomer_lib_sbase_molecule_button_press(*args) on_monomer_lib_sbase_molecule_button_press = _coot.on_monomer_lib_sbase_molecule_button_press def mutate_internal(*args): return _coot.mutate_internal(*args) mutate_internal = _coot.mutate_internal def execute_ligand_search_internal(): return _coot.execute_ligand_search_internal() execute_ligand_search_internal = _coot.execute_ligand_search_internal def overlap_ligands_internal(*args): return _coot.overlap_ligands_internal(*args) overlap_ligands_internal = _coot.overlap_ligands_internal def ligand_search_make_conformers_py(): return _coot.ligand_search_make_conformers_py() ligand_search_make_conformers_py = _coot.ligand_search_make_conformers_py def ligand_search_make_conformers_internal(): return _coot.ligand_search_make_conformers_internal() ligand_search_make_conformers_internal = _coot.ligand_search_make_conformers_internal def add_animated_ligand_interaction(*args): return _coot.add_animated_ligand_interaction(*args) add_animated_ligand_interaction = _coot.add_animated_ligand_interaction def cootaneer_internal(*args): return _coot.cootaneer_internal(*args) cootaneer_internal = _coot.cootaneer_internal def cootaneer_py(*args): return _coot.cootaneer_py(*args) cootaneer_py = _coot.cootaneer_py def is_interesting_dots_object_next_p(*args): return _coot.is_interesting_dots_object_next_p(*args) is_interesting_dots_object_next_p = _coot.is_interesting_dots_object_next_p def generic_string_vector_to_list_internal_py(*args): return _coot.generic_string_vector_to_list_internal_py(*args) generic_string_vector_to_list_internal_py = _coot.generic_string_vector_to_list_internal_py def generic_int_vector_to_list_internal_py(*args): return _coot.generic_int_vector_to_list_internal_py(*args) generic_int_vector_to_list_internal_py = _coot.generic_int_vector_to_list_internal_py def generic_list_to_string_vector_internal_py(*args): return _coot.generic_list_to_string_vector_internal_py(*args) generic_list_to_string_vector_internal_py = _coot.generic_list_to_string_vector_internal_py def rtop_to_python(*args): return _coot.rtop_to_python(*args) rtop_to_python = _coot.rtop_to_python def inverse_rtop_py(*args): return _coot.inverse_rtop_py(*args) inverse_rtop_py = _coot.inverse_rtop_py def atom_spec_from_python_expression(*args): return _coot.atom_spec_from_python_expression(*args) atom_spec_from_python_expression = _coot.atom_spec_from_python_expression def atom_spec_to_py(*args): return _coot.atom_spec_to_py(*args) atom_spec_to_py = _coot.atom_spec_to_py def set_display_control_button_state(*args): return _coot.set_display_control_button_state(*args) set_display_control_button_state = _coot.set_display_control_button_state def new_molecule_by_symmetry_matrix_from_molecule(*args): return _coot.new_molecule_by_symmetry_matrix_from_molecule(*args) new_molecule_by_symmetry_matrix_from_molecule = _coot.new_molecule_by_symmetry_matrix_from_molecule def coot_get_url(*args): return _coot.coot_get_url(*args) coot_get_url = _coot.coot_get_url def coot_get_url_and_activate_curl_hook(*args): return _coot.coot_get_url_and_activate_curl_hook(*args) coot_get_url_and_activate_curl_hook = _coot.coot_get_url_and_activate_curl_hook def coot_get_url_as_string_py(*args): return _coot.coot_get_url_as_string_py(*args) coot_get_url_as_string_py = _coot.coot_get_url_as_string_py def curl_progress_info_py(*args): return _coot.curl_progress_info_py(*args) curl_progress_info_py = _coot.curl_progress_info_py def write_coot_curl_data(*args): return _coot.write_coot_curl_data(*args) write_coot_curl_data = _coot.write_coot_curl_data def write_coot_curl_data_to_file(*args): return _coot.write_coot_curl_data_to_file(*args) write_coot_curl_data_to_file = _coot.write_coot_curl_data_to_file def coot_get_url_as_string_internal(*args): return _coot.coot_get_url_as_string_internal(*args) coot_get_url_as_string_internal = _coot.coot_get_url_as_string_internal def wrapped_curl_easy_perform(*args): return _coot.wrapped_curl_easy_perform(*args) wrapped_curl_easy_perform = _coot.wrapped_curl_easy_perform def stop_curl_download(*args): return _coot.stop_curl_download(*args) stop_curl_download = _coot.stop_curl_download def get_drug_mdl_via_wikipedia_and_drugbank(*args): return _coot.get_drug_mdl_via_wikipedia_and_drugbank(*args) get_drug_mdl_via_wikipedia_and_drugbank = _coot.get_drug_mdl_via_wikipedia_and_drugbank def orient_view(*args): return _coot.orient_view(*args) orient_view = _coot.orient_view def topological_equivalence_chiral_centres(*args): return _coot.topological_equivalence_chiral_centres(*args) topological_equivalence_chiral_centres = _coot.topological_equivalence_chiral_centres def make_complementary_dotted_surfaces(*args): return _coot.make_complementary_dotted_surfaces(*args) make_complementary_dotted_surfaces = _coot.make_complementary_dotted_surfaces def residue_records_list_py_to_residue_specs(*args): return _coot.residue_records_list_py_to_residue_specs(*args) residue_records_list_py_to_residue_specs = _coot.residue_records_list_py_to_residue_specs def add_generic_object_bond(*args): return _coot.add_generic_object_bond(*args) add_generic_object_bond = _coot.add_generic_object_bond def pisa_interfaces_display_only(*args): return _coot.pisa_interfaces_display_only(*args) pisa_interfaces_display_only = _coot.pisa_interfaces_display_only def untangle_mmdb_chain_id_string(*args): return _coot.untangle_mmdb_chain_id_string(*args) untangle_mmdb_chain_id_string = _coot.untangle_mmdb_chain_id_string def score_rotamers(*args): return _coot.score_rotamers(*args) score_rotamers = _coot.score_rotamers def score_rotamers_py(*args): return _coot.score_rotamers_py(*args) score_rotamers_py = _coot.score_rotamers_py def protein_db_loops(*args): return _coot.protein_db_loops(*args) protein_db_loops = _coot.protein_db_loops def protein_db_loop_specs_to_atom_selection_string(*args): return _coot.protein_db_loop_specs_to_atom_selection_string(*args) protein_db_loop_specs_to_atom_selection_string = _coot.protein_db_loop_specs_to_atom_selection_string def protein_db_loops_py(*args): return _coot.protein_db_loops_py(*args) protein_db_loops_py = _coot.protein_db_loops_py def hole(*args): return _coot.hole(*args) hole = _coot.hole def probe_radius_graph_close_callback(*args): return _coot.probe_radius_graph_close_callback(*args) probe_radius_graph_close_callback = _coot.probe_radius_graph_close_callback def show_hole_probe_radius_graph(*args): return _coot.show_hole_probe_radius_graph(*args) show_hole_probe_radius_graph = _coot.show_hole_probe_radius_graph def show_hole_probe_radius_graph_basic(*args): return _coot.show_hole_probe_radius_graph_basic(*args) show_hole_probe_radius_graph_basic = _coot.show_hole_probe_radius_graph_basic def show_hole_probe_radius_graph_goocanvas(*args): return _coot.show_hole_probe_radius_graph_goocanvas(*args) show_hole_probe_radius_graph_goocanvas = _coot.show_hole_probe_radius_graph_goocanvas def make_link(*args): return _coot.make_link(*args) make_link = _coot.make_link def make_link_py(*args): return _coot.make_link_py(*args) make_link_py = _coot.make_link_py def link_info_py(*args): return _coot.link_info_py(*args) link_info_py = _coot.link_info_py def handle_drag_and_drop_string(*args): return _coot.handle_drag_and_drop_string(*args) handle_drag_and_drop_string = _coot.handle_drag_and_drop_string def set_map_correlation_atom_radius(*args): return _coot.set_map_correlation_atom_radius(*args) set_map_correlation_atom_radius = _coot.set_map_correlation_atom_radius def map_to_model_correlation_py(*args): return _coot.map_to_model_correlation_py(*args) map_to_model_correlation_py = _coot.map_to_model_correlation_py def map_to_model_correlation_stats_py(*args): return _coot.map_to_model_correlation_stats_py(*args) map_to_model_correlation_stats_py = _coot.map_to_model_correlation_stats_py def map_to_model_correlation(*args): return _coot.map_to_model_correlation(*args) map_to_model_correlation = _coot.map_to_model_correlation def map_to_model_correlation_stats(*args): return _coot.map_to_model_correlation_stats(*args) map_to_model_correlation_stats = _coot.map_to_model_correlation_stats def map_to_model_correlation_per_residue(*args): return _coot.map_to_model_correlation_per_residue(*args) map_to_model_correlation_per_residue = _coot.map_to_model_correlation_per_residue def map_to_model_correlation_per_residue_py(*args): return _coot.map_to_model_correlation_per_residue_py(*args) map_to_model_correlation_per_residue_py = _coot.map_to_model_correlation_per_residue_py def qq_plot_map_and_model_py(*args): return _coot.qq_plot_map_and_model_py(*args) qq_plot_map_and_model_py = _coot.qq_plot_map_and_model_py def density_score_residue_py(*args): return _coot.density_score_residue_py(*args) density_score_residue_py = _coot.density_score_residue_py def density_score_residue(*args): return _coot.density_score_residue(*args) density_score_residue = _coot.density_score_residue def map_mean_py(*args): return _coot.map_mean_py(*args) map_mean_py = _coot.map_mean_py def map_sigma_py(*args): return _coot.map_sigma_py(*args) map_sigma_py = _coot.map_sigma_py def map_statistics_py(*args): return _coot.map_statistics_py(*args) map_statistics_py = _coot.map_statistics_py def register_interesting_positions_list_py(*args): return _coot.register_interesting_positions_list_py(*args) register_interesting_positions_list_py = _coot.register_interesting_positions_list_py def prodrg_import_function(*args): return _coot.prodrg_import_function(*args) prodrg_import_function = _coot.prodrg_import_function def sbase_import_function(*args): return _coot.sbase_import_function(*args) sbase_import_function = _coot.sbase_import_function def align_to_closest_chain(*args): return _coot.align_to_closest_chain(*args) align_to_closest_chain = _coot.align_to_closest_chain def align_to_closest_chain_py(*args): return _coot.align_to_closest_chain_py(*args) align_to_closest_chain_py = _coot.align_to_closest_chain_py def simple_text_dialog(*args): return _coot.simple_text_dialog(*args) simple_text_dialog = _coot.simple_text_dialog def on_simple_text_dialog_close_button_pressed(*args): return _coot.on_simple_text_dialog_close_button_pressed(*args) on_simple_text_dialog_close_button_pressed = _coot.on_simple_text_dialog_close_button_pressed def encode_ints(*args): return _coot.encode_ints(*args) encode_ints = _coot.encode_ints def decode_ints(*args): return _coot.decode_ints(*args) decode_ints = _coot.decode_ints def store_keyed_user_name(*args): return _coot.store_keyed_user_name(*args) store_keyed_user_name = _coot.store_keyed_user_name def py_to_residue_specs(*args): return _coot.py_to_residue_specs(*args) py_to_residue_specs = _coot.py_to_residue_specs def key_sym_code_py(*args): return _coot.key_sym_code_py(*args) key_sym_code_py = _coot.key_sym_code_py def py_symop_strings_to_space_group(*args): return _coot.py_symop_strings_to_space_group(*args) py_symop_strings_to_space_group = _coot.py_symop_strings_to_space_group def safe_scheme_command(*args): return _coot.safe_scheme_command(*args) safe_scheme_command = _coot.safe_scheme_command def safe_python_command(*args): return _coot.safe_python_command(*args) safe_python_command = _coot.safe_python_command def safe_python_command_by_char_star(*args): return _coot.safe_python_command_by_char_star(*args) safe_python_command_by_char_star = _coot.safe_python_command_by_char_star def py_clean_internal(*args): return _coot.py_clean_internal(*args) py_clean_internal = _coot.py_clean_internal def safe_python_command_with_return(*args): return _coot.safe_python_command_with_return(*args) safe_python_command_with_return = _coot.safe_python_command_with_return def safe_python_command_test(*args): return _coot.safe_python_command_test(*args) safe_python_command_test = _coot.safe_python_command_test def safe_python_command_with_unsafe_thread(*args): return _coot.safe_python_command_with_unsafe_thread(*args) safe_python_command_with_unsafe_thread = _coot.safe_python_command_with_unsafe_thread def run_generic_script(*args): return _coot.run_generic_script(*args) run_generic_script = _coot.run_generic_script def display_python(*args): return _coot.display_python(*args) display_python = _coot.display_python def make_atom_spec_py(*args): return _coot.make_atom_spec_py(*args) make_atom_spec_py = _coot.make_atom_spec_py def make_residue_spec_py(*args): return _coot.make_residue_spec_py(*args) make_residue_spec_py = _coot.make_residue_spec_py def new_molecule_sans_biggest_ligand(*args): return _coot.new_molecule_sans_biggest_ligand(*args) new_molecule_sans_biggest_ligand = _coot.new_molecule_sans_biggest_ligand def get_monomer_molecule_by_network_and_dict_gen(*args): return _coot.get_monomer_molecule_by_network_and_dict_gen(*args) get_monomer_molecule_by_network_and_dict_gen = _coot.get_monomer_molecule_by_network_and_dict_gen def new_molecule_sans_biggest_ligand_py(*args): return _coot.new_molecule_sans_biggest_ligand_py(*args) new_molecule_sans_biggest_ligand_py = _coot.new_molecule_sans_biggest_ligand_py def gui_ligand_metrics_py(*args): return _coot.gui_ligand_metrics_py(*args) gui_ligand_metrics_py = _coot.gui_ligand_metrics_py def probe_clash_score(*args): return _coot.probe_clash_score(*args) probe_clash_score = _coot.probe_clash_score def ligand_atom_overlaps_py(*args): return _coot.ligand_atom_overlaps_py(*args) ligand_atom_overlaps_py = _coot.ligand_atom_overlaps_py def residues_torsions_match_py(*args): return _coot.residues_torsions_match_py(*args) residues_torsions_match_py = _coot.residues_torsions_match_py def kolmogorov_smirnov_py(*args): return _coot.kolmogorov_smirnov_py(*args) kolmogorov_smirnov_py = _coot.kolmogorov_smirnov_py def kullback_liebler_py(*args): return _coot.kullback_liebler_py(*args) kullback_liebler_py = _coot.kullback_liebler_py def print_residue_distortions(*args): return _coot.print_residue_distortions(*args) print_residue_distortions = _coot.print_residue_distortions def display_residue_distortions(*args): return _coot.display_residue_distortions(*args) display_residue_distortions = _coot.display_residue_distortions def display_residue_hydrogen_bond_atom_status_using_dictionary(*args): return _coot.display_residue_hydrogen_bond_atom_status_using_dictionary(*args) display_residue_hydrogen_bond_atom_status_using_dictionary = _coot.display_residue_hydrogen_bond_atom_status_using_dictionary def write_dictionary_from_residue(*args): return _coot.write_dictionary_from_residue(*args) write_dictionary_from_residue = _coot.write_dictionary_from_residue def add_dictionary_from_residue(*args): return _coot.add_dictionary_from_residue(*args) add_dictionary_from_residue = _coot.add_dictionary_from_residue def invert_chiral_centre(*args): return _coot.invert_chiral_centre(*args) invert_chiral_centre = _coot.invert_chiral_centre def match_residue_and_dictionary(*args): return _coot.match_residue_and_dictionary(*args) match_residue_and_dictionary = _coot.match_residue_and_dictionary def match_this_residue_and_dictionary(*args): return _coot.match_this_residue_and_dictionary(*args) match_this_residue_and_dictionary = _coot.match_this_residue_and_dictionary def comprised_of_organic_set_p(*args): return _coot.comprised_of_organic_set_p(*args) comprised_of_organic_set_p = _coot.comprised_of_organic_set_p def get_ligand_percentile(*args): return _coot.get_ligand_percentile(*args) get_ligand_percentile = _coot.get_ligand_percentile def enhanced_ligand_coot_p(): return _coot.enhanced_ligand_coot_p() enhanced_ligand_coot_p = _coot.enhanced_ligand_coot_p def mogul_markup(*args): return _coot.mogul_markup(*args) mogul_markup = _coot.mogul_markup def update_restraints_using_mogul(*args): return _coot.update_restraints_using_mogul(*args) update_restraints_using_mogul = _coot.update_restraints_using_mogul def set_mogul_max_badness(*args): return _coot.set_mogul_max_badness(*args) set_mogul_max_badness = _coot.set_mogul_max_badness def get_mogul_max_badness(): return _coot.get_mogul_max_badness() get_mogul_max_badness = _coot.get_mogul_max_badness class sequence_to_chain_results_t(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, sequence_to_chain_results_t, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, sequence_to_chain_results_t, name) __repr__ = _swig_repr def __init__(self): this = _coot.new_sequence_to_chain_results_t() try: self.this.append(this) except: self.this = this __swig_setmethods__["matches"] = _coot.sequence_to_chain_results_t_matches_set __swig_getmethods__["matches"] = _coot.sequence_to_chain_results_t_matches_get if _newclass:matches = _swig_property(_coot.sequence_to_chain_results_t_matches_get, _coot.sequence_to_chain_results_t_matches_set) __swig_setmethods__["match_fraction"] = _coot.sequence_to_chain_results_t_match_fraction_set __swig_getmethods__["match_fraction"] = _coot.sequence_to_chain_results_t_match_fraction_get if _newclass:match_fraction = _swig_property(_coot.sequence_to_chain_results_t_match_fraction_get, _coot.sequence_to_chain_results_t_match_fraction_set) __swig_destroy__ = _coot.delete_sequence_to_chain_results_t __del__ = lambda self : None; sequence_to_chain_results_t_swigregister = _coot.sequence_to_chain_results_t_swigregister sequence_to_chain_results_t_swigregister(sequence_to_chain_results_t) def atom_info_as_text_for_statusbar(*args): return _coot.atom_info_as_text_for_statusbar(*args) atom_info_as_text_for_statusbar = _coot.atom_info_as_text_for_statusbar def graphics_to_phenix_geo_representation(*args): return _coot.graphics_to_phenix_geo_representation(*args) graphics_to_phenix_geo_representation = _coot.graphics_to_phenix_geo_representation def sequence_comparison_to_chains(*args): return _coot.sequence_comparison_to_chains(*args) sequence_comparison_to_chains = _coot.sequence_comparison_to_chains def assign_sequence_to_best_matching_chain(*args): return _coot.assign_sequence_to_best_matching_chain(*args) assign_sequence_to_best_matching_chain = _coot.assign_sequence_to_best_matching_chain def assign_sequences_to_best_matching_chain_from_fasta(*args): return _coot.assign_sequences_to_best_matching_chain_from_fasta(*args) assign_sequences_to_best_matching_chain_from_fasta = _coot.assign_sequences_to_best_matching_chain_from_fasta def set_refmac_molecule(*args): return _coot.set_refmac_molecule(*args) set_refmac_molecule = _coot.set_refmac_molecule def get_refmac_refinement_method(): return _coot.get_refmac_refinement_method() get_refmac_refinement_method = _coot.get_refmac_refinement_method def set_refmac_refinement_method(*args): return _coot.set_refmac_refinement_method(*args) set_refmac_refinement_method = _coot.set_refmac_refinement_method def get_refmac_phase_input(): return _coot.get_refmac_phase_input() get_refmac_phase_input = _coot.get_refmac_phase_input def set_refmac_phase_input(*args): return _coot.set_refmac_phase_input(*args) set_refmac_phase_input = _coot.set_refmac_phase_input def set_refmac_use_tls(*args): return _coot.set_refmac_use_tls(*args) set_refmac_use_tls = _coot.set_refmac_use_tls def refmac_use_tls_state(): return _coot.refmac_use_tls_state() refmac_use_tls_state = _coot.refmac_use_tls_state def set_refmac_use_twin(*args): return _coot.set_refmac_use_twin(*args) set_refmac_use_twin = _coot.set_refmac_use_twin def refmac_use_twin_state(): return _coot.refmac_use_twin_state() refmac_use_twin_state = _coot.refmac_use_twin_state def set_refmac_use_sad(*args): return _coot.set_refmac_use_sad(*args) set_refmac_use_sad = _coot.set_refmac_use_sad def refmac_use_sad_state(): return _coot.refmac_use_sad_state() refmac_use_sad_state = _coot.refmac_use_sad_state def get_refmac_ncycles(): return _coot.get_refmac_ncycles() get_refmac_ncycles = _coot.get_refmac_ncycles def set_refmac_ncycles(*args): return _coot.set_refmac_ncycles(*args) set_refmac_ncycles = _coot.set_refmac_ncycles def add_refmac_ncycle_no(*args): return _coot.add_refmac_ncycle_no(*args) add_refmac_ncycle_no = _coot.add_refmac_ncycle_no def set_refmac_use_ncs(*args): return _coot.set_refmac_use_ncs(*args) set_refmac_use_ncs = _coot.set_refmac_use_ncs def refmac_use_ncs_state(): return _coot.refmac_use_ncs_state() refmac_use_ncs_state = _coot.refmac_use_ncs_state def set_refmac_use_intensities(*args): return _coot.set_refmac_use_intensities(*args) set_refmac_use_intensities = _coot.set_refmac_use_intensities def refmac_use_intensities_state(): return _coot.refmac_use_intensities_state() refmac_use_intensities_state = _coot.refmac_use_intensities_state def refmac_imol_coords(): return _coot.refmac_imol_coords() refmac_imol_coords = _coot.refmac_imol_coords def add_refmac_sad_atom(*args): return _coot.add_refmac_sad_atom(*args) add_refmac_sad_atom = _coot.add_refmac_sad_atom def add_refmac_sad_atom_fp(*args): return _coot.add_refmac_sad_atom_fp(*args) add_refmac_sad_atom_fp = _coot.add_refmac_sad_atom_fp def add_refmac_sad_atom_lambda(*args): return _coot.add_refmac_sad_atom_lambda(*args) add_refmac_sad_atom_lambda = _coot.add_refmac_sad_atom_lambda def clear_refmac_sad_atoms(): return _coot.clear_refmac_sad_atoms() clear_refmac_sad_atoms = _coot.clear_refmac_sad_atoms def get_refmac_used_mtz_file_state(): return _coot.get_refmac_used_mtz_file_state() get_refmac_used_mtz_file_state = _coot.get_refmac_used_mtz_file_state def set_refmac_used_mtz_file(*args): return _coot.set_refmac_used_mtz_file(*args) set_refmac_used_mtz_file = _coot.set_refmac_used_mtz_file def get_saved_refmac_file_filename(): return _coot.get_saved_refmac_file_filename() get_saved_refmac_file_filename = _coot.get_saved_refmac_file_filename def set_stored_refmac_file_mtz_filename(*args): return _coot.set_stored_refmac_file_mtz_filename(*args) set_stored_refmac_file_mtz_filename = _coot.set_stored_refmac_file_mtz_filename def save_refmac_params_to_map(*args): return _coot.save_refmac_params_to_map(*args) save_refmac_params_to_map = _coot.save_refmac_params_to_map def save_refmac_phase_params_to_map(*args): return _coot.save_refmac_phase_params_to_map(*args) save_refmac_phase_params_to_map = _coot.save_refmac_phase_params_to_map class mtz_type_label(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, mtz_type_label, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, mtz_type_label, name) __repr__ = _swig_repr __swig_setmethods__["column_type"] = _coot.mtz_type_label_column_type_set __swig_getmethods__["column_type"] = _coot.mtz_type_label_column_type_get if _newclass:column_type = _swig_property(_coot.mtz_type_label_column_type_get, _coot.mtz_type_label_column_type_set) __swig_setmethods__["column_label"] = _coot.mtz_type_label_column_label_set __swig_getmethods__["column_label"] = _coot.mtz_type_label_column_label_get if _newclass:column_label = _swig_property(_coot.mtz_type_label_column_label_get, _coot.mtz_type_label_column_label_set) __swig_setmethods__["column_position"] = _coot.mtz_type_label_column_position_set __swig_getmethods__["column_position"] = _coot.mtz_type_label_column_position_get if _newclass:column_position = _swig_property(_coot.mtz_type_label_column_position_get, _coot.mtz_type_label_column_position_set) def __init__(self, *args): this = _coot.new_mtz_type_label(*args) try: self.this.append(this) except: self.this = this __swig_destroy__ = _coot.delete_mtz_type_label __del__ = lambda self : None; mtz_type_label_swigregister = _coot.mtz_type_label_swigregister mtz_type_label_swigregister(mtz_type_label) class mtz_column_types_info_t(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, mtz_column_types_info_t, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, mtz_column_types_info_t, name) __repr__ = _swig_repr __swig_setmethods__["mtz_filename"] = _coot.mtz_column_types_info_t_mtz_filename_set __swig_getmethods__["mtz_filename"] = _coot.mtz_column_types_info_t_mtz_filename_get if _newclass:mtz_filename = _swig_property(_coot.mtz_column_types_info_t_mtz_filename_get, _coot.mtz_column_types_info_t_mtz_filename_set) __swig_setmethods__["read_success"] = _coot.mtz_column_types_info_t_read_success_set __swig_getmethods__["read_success"] = _coot.mtz_column_types_info_t_read_success_get if _newclass:read_success = _swig_property(_coot.mtz_column_types_info_t_read_success_get, _coot.mtz_column_types_info_t_read_success_set) __swig_setmethods__["f_cols"] = _coot.mtz_column_types_info_t_f_cols_set __swig_getmethods__["f_cols"] = _coot.mtz_column_types_info_t_f_cols_get if _newclass:f_cols = _swig_property(_coot.mtz_column_types_info_t_f_cols_get, _coot.mtz_column_types_info_t_f_cols_set) __swig_setmethods__["sigf_cols"] = _coot.mtz_column_types_info_t_sigf_cols_set __swig_getmethods__["sigf_cols"] = _coot.mtz_column_types_info_t_sigf_cols_get if _newclass:sigf_cols = _swig_property(_coot.mtz_column_types_info_t_sigf_cols_get, _coot.mtz_column_types_info_t_sigf_cols_set) __swig_setmethods__["d_cols"] = _coot.mtz_column_types_info_t_d_cols_set __swig_getmethods__["d_cols"] = _coot.mtz_column_types_info_t_d_cols_get if _newclass:d_cols = _swig_property(_coot.mtz_column_types_info_t_d_cols_get, _coot.mtz_column_types_info_t_d_cols_set) __swig_setmethods__["sigd_cols"] = _coot.mtz_column_types_info_t_sigd_cols_set __swig_getmethods__["sigd_cols"] = _coot.mtz_column_types_info_t_sigd_cols_get if _newclass:sigd_cols = _swig_property(_coot.mtz_column_types_info_t_sigd_cols_get, _coot.mtz_column_types_info_t_sigd_cols_set) __swig_setmethods__["phi_cols"] = _coot.mtz_column_types_info_t_phi_cols_set __swig_getmethods__["phi_cols"] = _coot.mtz_column_types_info_t_phi_cols_get if _newclass:phi_cols = _swig_property(_coot.mtz_column_types_info_t_phi_cols_get, _coot.mtz_column_types_info_t_phi_cols_set) __swig_setmethods__["weight_cols"] = _coot.mtz_column_types_info_t_weight_cols_set __swig_getmethods__["weight_cols"] = _coot.mtz_column_types_info_t_weight_cols_get if _newclass:weight_cols = _swig_property(_coot.mtz_column_types_info_t_weight_cols_get, _coot.mtz_column_types_info_t_weight_cols_set) __swig_setmethods__["r_free_cols"] = _coot.mtz_column_types_info_t_r_free_cols_set __swig_getmethods__["r_free_cols"] = _coot.mtz_column_types_info_t_r_free_cols_get if _newclass:r_free_cols = _swig_property(_coot.mtz_column_types_info_t_r_free_cols_get, _coot.mtz_column_types_info_t_r_free_cols_set) __swig_setmethods__["hl_cols"] = _coot.mtz_column_types_info_t_hl_cols_set __swig_getmethods__["hl_cols"] = _coot.mtz_column_types_info_t_hl_cols_get if _newclass:hl_cols = _swig_property(_coot.mtz_column_types_info_t_hl_cols_get, _coot.mtz_column_types_info_t_hl_cols_set) __swig_setmethods__["fpm_cols"] = _coot.mtz_column_types_info_t_fpm_cols_set __swig_getmethods__["fpm_cols"] = _coot.mtz_column_types_info_t_fpm_cols_get if _newclass:fpm_cols = _swig_property(_coot.mtz_column_types_info_t_fpm_cols_get, _coot.mtz_column_types_info_t_fpm_cols_set) __swig_setmethods__["sigfpm_cols"] = _coot.mtz_column_types_info_t_sigfpm_cols_set __swig_getmethods__["sigfpm_cols"] = _coot.mtz_column_types_info_t_sigfpm_cols_get if _newclass:sigfpm_cols = _swig_property(_coot.mtz_column_types_info_t_sigfpm_cols_get, _coot.mtz_column_types_info_t_sigfpm_cols_set) __swig_setmethods__["i_cols"] = _coot.mtz_column_types_info_t_i_cols_set __swig_getmethods__["i_cols"] = _coot.mtz_column_types_info_t_i_cols_get if _newclass:i_cols = _swig_property(_coot.mtz_column_types_info_t_i_cols_get, _coot.mtz_column_types_info_t_i_cols_set) __swig_setmethods__["ipm_cols"] = _coot.mtz_column_types_info_t_ipm_cols_set __swig_getmethods__["ipm_cols"] = _coot.mtz_column_types_info_t_ipm_cols_get if _newclass:ipm_cols = _swig_property(_coot.mtz_column_types_info_t_ipm_cols_get, _coot.mtz_column_types_info_t_ipm_cols_set) __swig_setmethods__["sigipm_cols"] = _coot.mtz_column_types_info_t_sigipm_cols_set __swig_getmethods__["sigipm_cols"] = _coot.mtz_column_types_info_t_sigipm_cols_get if _newclass:sigipm_cols = _swig_property(_coot.mtz_column_types_info_t_sigipm_cols_get, _coot.mtz_column_types_info_t_sigipm_cols_set) __swig_setmethods__["selected_f_col"] = _coot.mtz_column_types_info_t_selected_f_col_set __swig_getmethods__["selected_f_col"] = _coot.mtz_column_types_info_t_selected_f_col_get if _newclass:selected_f_col = _swig_property(_coot.mtz_column_types_info_t_selected_f_col_get, _coot.mtz_column_types_info_t_selected_f_col_set) __swig_setmethods__["selected_phi_col"] = _coot.mtz_column_types_info_t_selected_phi_col_set __swig_getmethods__["selected_phi_col"] = _coot.mtz_column_types_info_t_selected_phi_col_get if _newclass:selected_phi_col = _swig_property(_coot.mtz_column_types_info_t_selected_phi_col_get, _coot.mtz_column_types_info_t_selected_phi_col_set) __swig_setmethods__["selected_weight_col"] = _coot.mtz_column_types_info_t_selected_weight_col_set __swig_getmethods__["selected_weight_col"] = _coot.mtz_column_types_info_t_selected_weight_col_get if _newclass:selected_weight_col = _swig_property(_coot.mtz_column_types_info_t_selected_weight_col_get, _coot.mtz_column_types_info_t_selected_weight_col_set) __swig_setmethods__["selected_refmac_fobs_col"] = _coot.mtz_column_types_info_t_selected_refmac_fobs_col_set __swig_getmethods__["selected_refmac_fobs_col"] = _coot.mtz_column_types_info_t_selected_refmac_fobs_col_get if _newclass:selected_refmac_fobs_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_fobs_col_get, _coot.mtz_column_types_info_t_selected_refmac_fobs_col_set) __swig_setmethods__["selected_refmac_sigfobs_col"] = _coot.mtz_column_types_info_t_selected_refmac_sigfobs_col_set __swig_getmethods__["selected_refmac_sigfobs_col"] = _coot.mtz_column_types_info_t_selected_refmac_sigfobs_col_get if _newclass:selected_refmac_sigfobs_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_sigfobs_col_get, _coot.mtz_column_types_info_t_selected_refmac_sigfobs_col_set) __swig_setmethods__["selected_refmac_r_free_col"] = _coot.mtz_column_types_info_t_selected_refmac_r_free_col_set __swig_getmethods__["selected_refmac_r_free_col"] = _coot.mtz_column_types_info_t_selected_refmac_r_free_col_get if _newclass:selected_refmac_r_free_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_r_free_col_get, _coot.mtz_column_types_info_t_selected_refmac_r_free_col_set) __swig_setmethods__["selected_refmac_phi_col"] = _coot.mtz_column_types_info_t_selected_refmac_phi_col_set __swig_getmethods__["selected_refmac_phi_col"] = _coot.mtz_column_types_info_t_selected_refmac_phi_col_get if _newclass:selected_refmac_phi_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_phi_col_get, _coot.mtz_column_types_info_t_selected_refmac_phi_col_set) __swig_setmethods__["selected_refmac_fom_col"] = _coot.mtz_column_types_info_t_selected_refmac_fom_col_set __swig_getmethods__["selected_refmac_fom_col"] = _coot.mtz_column_types_info_t_selected_refmac_fom_col_get if _newclass:selected_refmac_fom_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_fom_col_get, _coot.mtz_column_types_info_t_selected_refmac_fom_col_set) __swig_setmethods__["selected_refmac_hla_col"] = _coot.mtz_column_types_info_t_selected_refmac_hla_col_set __swig_getmethods__["selected_refmac_hla_col"] = _coot.mtz_column_types_info_t_selected_refmac_hla_col_get if _newclass:selected_refmac_hla_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_hla_col_get, _coot.mtz_column_types_info_t_selected_refmac_hla_col_set) __swig_setmethods__["selected_refmac_hlb_col"] = _coot.mtz_column_types_info_t_selected_refmac_hlb_col_set __swig_getmethods__["selected_refmac_hlb_col"] = _coot.mtz_column_types_info_t_selected_refmac_hlb_col_get if _newclass:selected_refmac_hlb_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_hlb_col_get, _coot.mtz_column_types_info_t_selected_refmac_hlb_col_set) __swig_setmethods__["selected_refmac_hlc_col"] = _coot.mtz_column_types_info_t_selected_refmac_hlc_col_set __swig_getmethods__["selected_refmac_hlc_col"] = _coot.mtz_column_types_info_t_selected_refmac_hlc_col_get if _newclass:selected_refmac_hlc_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_hlc_col_get, _coot.mtz_column_types_info_t_selected_refmac_hlc_col_set) __swig_setmethods__["selected_refmac_hld_col"] = _coot.mtz_column_types_info_t_selected_refmac_hld_col_set __swig_getmethods__["selected_refmac_hld_col"] = _coot.mtz_column_types_info_t_selected_refmac_hld_col_get if _newclass:selected_refmac_hld_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_hld_col_get, _coot.mtz_column_types_info_t_selected_refmac_hld_col_set) __swig_setmethods__["selected_refmac_fp_col"] = _coot.mtz_column_types_info_t_selected_refmac_fp_col_set __swig_getmethods__["selected_refmac_fp_col"] = _coot.mtz_column_types_info_t_selected_refmac_fp_col_get if _newclass:selected_refmac_fp_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_fp_col_get, _coot.mtz_column_types_info_t_selected_refmac_fp_col_set) __swig_setmethods__["selected_refmac_sigfp_col"] = _coot.mtz_column_types_info_t_selected_refmac_sigfp_col_set __swig_getmethods__["selected_refmac_sigfp_col"] = _coot.mtz_column_types_info_t_selected_refmac_sigfp_col_get if _newclass:selected_refmac_sigfp_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_sigfp_col_get, _coot.mtz_column_types_info_t_selected_refmac_sigfp_col_set) __swig_setmethods__["selected_refmac_fm_col"] = _coot.mtz_column_types_info_t_selected_refmac_fm_col_set __swig_getmethods__["selected_refmac_fm_col"] = _coot.mtz_column_types_info_t_selected_refmac_fm_col_get if _newclass:selected_refmac_fm_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_fm_col_get, _coot.mtz_column_types_info_t_selected_refmac_fm_col_set) __swig_setmethods__["selected_refmac_sigfm_col"] = _coot.mtz_column_types_info_t_selected_refmac_sigfm_col_set __swig_getmethods__["selected_refmac_sigfm_col"] = _coot.mtz_column_types_info_t_selected_refmac_sigfm_col_get if _newclass:selected_refmac_sigfm_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_sigfm_col_get, _coot.mtz_column_types_info_t_selected_refmac_sigfm_col_set) __swig_setmethods__["selected_refmac_iobs_col"] = _coot.mtz_column_types_info_t_selected_refmac_iobs_col_set __swig_getmethods__["selected_refmac_iobs_col"] = _coot.mtz_column_types_info_t_selected_refmac_iobs_col_get if _newclass:selected_refmac_iobs_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_iobs_col_get, _coot.mtz_column_types_info_t_selected_refmac_iobs_col_set) __swig_setmethods__["selected_refmac_sigiobs_col"] = _coot.mtz_column_types_info_t_selected_refmac_sigiobs_col_set __swig_getmethods__["selected_refmac_sigiobs_col"] = _coot.mtz_column_types_info_t_selected_refmac_sigiobs_col_get if _newclass:selected_refmac_sigiobs_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_sigiobs_col_get, _coot.mtz_column_types_info_t_selected_refmac_sigiobs_col_set) __swig_setmethods__["selected_refmac_ip_col"] = _coot.mtz_column_types_info_t_selected_refmac_ip_col_set __swig_getmethods__["selected_refmac_ip_col"] = _coot.mtz_column_types_info_t_selected_refmac_ip_col_get if _newclass:selected_refmac_ip_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_ip_col_get, _coot.mtz_column_types_info_t_selected_refmac_ip_col_set) __swig_setmethods__["selected_refmac_sigip_col"] = _coot.mtz_column_types_info_t_selected_refmac_sigip_col_set __swig_getmethods__["selected_refmac_sigip_col"] = _coot.mtz_column_types_info_t_selected_refmac_sigip_col_get if _newclass:selected_refmac_sigip_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_sigip_col_get, _coot.mtz_column_types_info_t_selected_refmac_sigip_col_set) __swig_setmethods__["selected_refmac_im_col"] = _coot.mtz_column_types_info_t_selected_refmac_im_col_set __swig_getmethods__["selected_refmac_im_col"] = _coot.mtz_column_types_info_t_selected_refmac_im_col_get if _newclass:selected_refmac_im_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_im_col_get, _coot.mtz_column_types_info_t_selected_refmac_im_col_set) __swig_setmethods__["selected_refmac_sigim_col"] = _coot.mtz_column_types_info_t_selected_refmac_sigim_col_set __swig_getmethods__["selected_refmac_sigim_col"] = _coot.mtz_column_types_info_t_selected_refmac_sigim_col_get if _newclass:selected_refmac_sigim_col = _swig_property(_coot.mtz_column_types_info_t_selected_refmac_sigim_col_get, _coot.mtz_column_types_info_t_selected_refmac_sigim_col_set) __swig_setmethods__["use_weights"] = _coot.mtz_column_types_info_t_use_weights_set __swig_getmethods__["use_weights"] = _coot.mtz_column_types_info_t_use_weights_get if _newclass:use_weights = _swig_property(_coot.mtz_column_types_info_t_use_weights_get, _coot.mtz_column_types_info_t_use_weights_set) def __init__(self): this = _coot.new_mtz_column_types_info_t() try: self.this.append(this) except: self.this = this __swig_destroy__ = _coot.delete_mtz_column_types_info_t __del__ = lambda self : None; mtz_column_types_info_t_swigregister = _coot.mtz_column_types_info_t_swigregister mtz_column_types_info_t_swigregister(mtz_column_types_info_t) def get_mtz_columns(*args): return _coot.get_mtz_columns(*args) get_mtz_columns = _coot.get_mtz_columns def get_f_cols(*args): return _coot.get_f_cols(*args) get_f_cols = _coot.get_f_cols def get_sigf_cols(*args): return _coot.get_sigf_cols(*args) get_sigf_cols = _coot.get_sigf_cols def get_r_free_cols(*args): return _coot.get_r_free_cols(*args) get_r_free_cols = _coot.get_r_free_cols def get_phi_cols(*args): return _coot.get_phi_cols(*args) get_phi_cols = _coot.get_phi_cols def get_weight_cols(*args): return _coot.get_weight_cols(*args) get_weight_cols = _coot.get_weight_cols def get_d_cols(*args): return _coot.get_d_cols(*args) get_d_cols = _coot.get_d_cols DELETED = _coot.DELETED MUTATED = _coot.MUTATED MOVINGATOMS = _coot.MOVINGATOMS ROTAMERSEARCHAUTOMATIC = _coot.ROTAMERSEARCHAUTOMATIC ROTAMERSEARCHHIGHRES = _coot.ROTAMERSEARCHHIGHRES ROTAMERSEARCHLOWRES = _coot.ROTAMERSEARCHLOWRES def residue_to_ligand_builder(*args): return _coot.residue_to_ligand_builder(*args) residue_to_ligand_builder = _coot.residue_to_ligand_builder def smiles_to_ligand_builder(*args): return _coot.smiles_to_ligand_builder(*args) smiles_to_ligand_builder = _coot.smiles_to_ligand_builder def residue_to_mdl_file_for_mogul(*args): return _coot.residue_to_mdl_file_for_mogul(*args) residue_to_mdl_file_for_mogul = _coot.residue_to_mdl_file_for_mogul def show_feats(*args): return _coot.show_feats(*args) show_feats = _coot.show_feats class atom_spec_t(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, atom_spec_t, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, atom_spec_t, name) __repr__ = _swig_repr __swig_setmethods__["chain_id"] = _coot.atom_spec_t_chain_id_set __swig_getmethods__["chain_id"] = _coot.atom_spec_t_chain_id_get if _newclass:chain_id = _swig_property(_coot.atom_spec_t_chain_id_get, _coot.atom_spec_t_chain_id_set) __swig_setmethods__["res_no"] = _coot.atom_spec_t_res_no_set __swig_getmethods__["res_no"] = _coot.atom_spec_t_res_no_get if _newclass:res_no = _swig_property(_coot.atom_spec_t_res_no_get, _coot.atom_spec_t_res_no_set) __swig_setmethods__["ins_code"] = _coot.atom_spec_t_ins_code_set __swig_getmethods__["ins_code"] = _coot.atom_spec_t_ins_code_get if _newclass:ins_code = _swig_property(_coot.atom_spec_t_ins_code_get, _coot.atom_spec_t_ins_code_set) __swig_setmethods__["atom_name"] = _coot.atom_spec_t_atom_name_set __swig_getmethods__["atom_name"] = _coot.atom_spec_t_atom_name_get if _newclass:atom_name = _swig_property(_coot.atom_spec_t_atom_name_get, _coot.atom_spec_t_atom_name_set) __swig_setmethods__["alt_conf"] = _coot.atom_spec_t_alt_conf_set __swig_getmethods__["alt_conf"] = _coot.atom_spec_t_alt_conf_get if _newclass:alt_conf = _swig_property(_coot.atom_spec_t_alt_conf_get, _coot.atom_spec_t_alt_conf_set) __swig_setmethods__["int_user_data"] = _coot.atom_spec_t_int_user_data_set __swig_getmethods__["int_user_data"] = _coot.atom_spec_t_int_user_data_get if _newclass:int_user_data = _swig_property(_coot.atom_spec_t_int_user_data_get, _coot.atom_spec_t_int_user_data_set) __swig_setmethods__["float_user_data"] = _coot.atom_spec_t_float_user_data_set __swig_getmethods__["float_user_data"] = _coot.atom_spec_t_float_user_data_get if _newclass:float_user_data = _swig_property(_coot.atom_spec_t_float_user_data_get, _coot.atom_spec_t_float_user_data_set) __swig_setmethods__["string_user_data"] = _coot.atom_spec_t_string_user_data_set __swig_getmethods__["string_user_data"] = _coot.atom_spec_t_string_user_data_get if _newclass:string_user_data = _swig_property(_coot.atom_spec_t_string_user_data_get, _coot.atom_spec_t_string_user_data_set) __swig_setmethods__["model_number"] = _coot.atom_spec_t_model_number_set __swig_getmethods__["model_number"] = _coot.atom_spec_t_model_number_get if _newclass:model_number = _swig_property(_coot.atom_spec_t_model_number_get, _coot.atom_spec_t_model_number_set) def __init__(self, *args): this = _coot.new_atom_spec_t(*args) try: self.this.append(this) except: self.this = this def empty(self): return _coot.atom_spec_t_empty(self) def selectatoms(self, *args): return _coot.atom_spec_t_selectatoms(self, *args) def matches_spec(self, *args): return _coot.atom_spec_t_matches_spec(self, *args) def format(self): return _coot.atom_spec_t_format(self) __swig_destroy__ = _coot.delete_atom_spec_t __del__ = lambda self : None; atom_spec_t_swigregister = _coot.atom_spec_t_swigregister atom_spec_t_swigregister(atom_spec_t) def residue_to_sdf_file(*args): return _coot.residue_to_sdf_file(*args) residue_to_sdf_file = _coot.residue_to_sdf_file def compare_atom_specs_user_float(*args): return _coot.compare_atom_specs_user_float(*args) compare_atom_specs_user_float = _coot.compare_atom_specs_user_float def compare_atom_specs_user_float_in_pair(*args): return _coot.compare_atom_specs_user_float_in_pair(*args) compare_atom_specs_user_float_in_pair = _coot.compare_atom_specs_user_float_in_pair def link_atoms(*args): return _coot.link_atoms(*args) link_atoms = _coot.link_atoms class residue_spec_t(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, residue_spec_t, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, residue_spec_t, name) __repr__ = _swig_repr __swig_setmethods__["model_number"] = _coot.residue_spec_t_model_number_set __swig_getmethods__["model_number"] = _coot.residue_spec_t_model_number_get if _newclass:model_number = _swig_property(_coot.residue_spec_t_model_number_get, _coot.residue_spec_t_model_number_set) __swig_setmethods__["chain_id"] = _coot.residue_spec_t_chain_id_set __swig_getmethods__["chain_id"] = _coot.residue_spec_t_chain_id_get if _newclass:chain_id = _swig_property(_coot.residue_spec_t_chain_id_get, _coot.residue_spec_t_chain_id_set) __swig_setmethods__["res_no"] = _coot.residue_spec_t_res_no_set __swig_getmethods__["res_no"] = _coot.residue_spec_t_res_no_get if _newclass:res_no = _swig_property(_coot.residue_spec_t_res_no_get, _coot.residue_spec_t_res_no_set) __swig_setmethods__["ins_code"] = _coot.residue_spec_t_ins_code_set __swig_getmethods__["ins_code"] = _coot.residue_spec_t_ins_code_get if _newclass:ins_code = _swig_property(_coot.residue_spec_t_ins_code_get, _coot.residue_spec_t_ins_code_set) __swig_setmethods__["int_user_data"] = _coot.residue_spec_t_int_user_data_set __swig_getmethods__["int_user_data"] = _coot.residue_spec_t_int_user_data_get if _newclass:int_user_data = _swig_property(_coot.residue_spec_t_int_user_data_get, _coot.residue_spec_t_int_user_data_set) def __init__(self, *args): this = _coot.new_residue_spec_t(*args) try: self.this.append(this) except: self.this = this def unset_p(self): return _coot.residue_spec_t_unset_p(self) def next(self): return _coot.residue_spec_t_next(self) def previous(self): return _coot.residue_spec_t_previous(self) def format(self): return _coot.residue_spec_t_format(self) def select_atoms(self, *args): return _coot.residue_spec_t_select_atoms(self, *args) __swig_destroy__ = _coot.delete_residue_spec_t __del__ = lambda self : None; residue_spec_t_swigregister = _coot.residue_spec_t_swigregister residue_spec_t_swigregister(residue_spec_t) class probe_atom_spec_t(atom_spec_t): __swig_setmethods__ = {} for _s in [atom_spec_t]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{})) __setattr__ = lambda self, name, value: _swig_setattr(self, probe_atom_spec_t, name, value) __swig_getmethods__ = {} for _s in [atom_spec_t]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{})) __getattr__ = lambda self, name: _swig_getattr(self, probe_atom_spec_t, name) __repr__ = _swig_repr def __init__(self, *args): this = _coot.new_probe_atom_spec_t(*args) try: self.this.append(this) except: self.this = this __swig_destroy__ = _coot.delete_probe_atom_spec_t __del__ = lambda self : None; probe_atom_spec_t_swigregister = _coot.probe_atom_spec_t_swigregister probe_atom_spec_t_swigregister(probe_atom_spec_t) class one_way_probe_contact_t(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, one_way_probe_contact_t, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, one_way_probe_contact_t, name) __repr__ = _swig_repr __swig_setmethods__["from_atom"] = _coot.one_way_probe_contact_t_from_atom_set __swig_getmethods__["from_atom"] = _coot.one_way_probe_contact_t_from_atom_get if _newclass:from_atom = _swig_property(_coot.one_way_probe_contact_t_from_atom_get, _coot.one_way_probe_contact_t_from_atom_set) __swig_setmethods__["to_atoms"] = _coot.one_way_probe_contact_t_to_atoms_set __swig_getmethods__["to_atoms"] = _coot.one_way_probe_contact_t_to_atoms_get if _newclass:to_atoms = _swig_property(_coot.one_way_probe_contact_t_to_atoms_get, _coot.one_way_probe_contact_t_to_atoms_set) def __init__(self, *args): this = _coot.new_one_way_probe_contact_t(*args) try: self.this.append(this) except: self.this = this def size(self): return _coot.one_way_probe_contact_t_size(self) def add(self, *args): return _coot.one_way_probe_contact_t_add(self, *args) __swig_destroy__ = _coot.delete_one_way_probe_contact_t __del__ = lambda self : None; one_way_probe_contact_t_swigregister = _coot.one_way_probe_contact_t_swigregister one_way_probe_contact_t_swigregister(one_way_probe_contact_t) class one_way_probe_contact_container_t(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, one_way_probe_contact_container_t, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, one_way_probe_contact_container_t, name) __repr__ = _swig_repr __swig_setmethods__["contacts"] = _coot.one_way_probe_contact_container_t_contacts_set __swig_getmethods__["contacts"] = _coot.one_way_probe_contact_container_t_contacts_get if _newclass:contacts = _swig_property(_coot.one_way_probe_contact_container_t_contacts_get, _coot.one_way_probe_contact_container_t_contacts_set) def add(self, *args): return _coot.one_way_probe_contact_container_t_add(self, *args) def size(self): return _coot.one_way_probe_contact_container_t_size(self) def __init__(self): this = _coot.new_one_way_probe_contact_container_t() try: self.this.append(this) except: self.this = this __swig_destroy__ = _coot.delete_one_way_probe_contact_container_t __del__ = lambda self : None; one_way_probe_contact_container_t_swigregister = _coot.one_way_probe_contact_container_t_swigregister one_way_probe_contact_container_t_swigregister(one_way_probe_contact_container_t) class probe_clash_score_t(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, probe_clash_score_t, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, probe_clash_score_t, name) __repr__ = _swig_repr __swig_setmethods__["filled"] = _coot.probe_clash_score_t_filled_set __swig_getmethods__["filled"] = _coot.probe_clash_score_t_filled_get if _newclass:filled = _swig_property(_coot.probe_clash_score_t_filled_get, _coot.probe_clash_score_t_filled_set) __swig_setmethods__["n_bad_overlaps"] = _coot.probe_clash_score_t_n_bad_overlaps_set __swig_getmethods__["n_bad_overlaps"] = _coot.probe_clash_score_t_n_bad_overlaps_get if _newclass:n_bad_overlaps = _swig_property(_coot.probe_clash_score_t_n_bad_overlaps_get, _coot.probe_clash_score_t_n_bad_overlaps_set) __swig_setmethods__["n_hydrogen_bonds"] = _coot.probe_clash_score_t_n_hydrogen_bonds_set __swig_getmethods__["n_hydrogen_bonds"] = _coot.probe_clash_score_t_n_hydrogen_bonds_get if _newclass:n_hydrogen_bonds = _swig_property(_coot.probe_clash_score_t_n_hydrogen_bonds_get, _coot.probe_clash_score_t_n_hydrogen_bonds_set) __swig_setmethods__["n_small_overlaps"] = _coot.probe_clash_score_t_n_small_overlaps_set __swig_getmethods__["n_small_overlaps"] = _coot.probe_clash_score_t_n_small_overlaps_get if _newclass:n_small_overlaps = _swig_property(_coot.probe_clash_score_t_n_small_overlaps_get, _coot.probe_clash_score_t_n_small_overlaps_set) __swig_setmethods__["n_close_contacts"] = _coot.probe_clash_score_t_n_close_contacts_set __swig_getmethods__["n_close_contacts"] = _coot.probe_clash_score_t_n_close_contacts_get if _newclass:n_close_contacts = _swig_property(_coot.probe_clash_score_t_n_close_contacts_get, _coot.probe_clash_score_t_n_close_contacts_set) __swig_setmethods__["n_wide_contacts"] = _coot.probe_clash_score_t_n_wide_contacts_set __swig_getmethods__["n_wide_contacts"] = _coot.probe_clash_score_t_n_wide_contacts_get if _newclass:n_wide_contacts = _swig_property(_coot.probe_clash_score_t_n_wide_contacts_get, _coot.probe_clash_score_t_n_wide_contacts_set) def __init__(self, *args): this = _coot.new_probe_clash_score_t(*args) try: self.this.append(this) except: self.this = this __swig_destroy__ = _coot.delete_probe_clash_score_t __del__ = lambda self : None; probe_clash_score_t_swigregister = _coot.probe_clash_score_t_swigregister probe_clash_score_t_swigregister(probe_clash_score_t) class spec_eraser(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, spec_eraser, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, spec_eraser, name) __repr__ = _swig_repr __swig_setmethods__["ref_specs"] = _coot.spec_eraser_ref_specs_set __swig_getmethods__["ref_specs"] = _coot.spec_eraser_ref_specs_get if _newclass:ref_specs = _swig_property(_coot.spec_eraser_ref_specs_get, _coot.spec_eraser_ref_specs_set) def __init__(self, *args): this = _coot.new_spec_eraser(*args) try: self.this.append(this) except: self.this = this def __call__(self, *args): return _coot.spec_eraser___call__(self, *args) __swig_destroy__ = _coot.delete_spec_eraser __del__ = lambda self : None; spec_eraser_swigregister = _coot.spec_eraser_swigregister spec_eraser_swigregister(spec_eraser) def probe_clash_score_py(*args): return _coot.probe_clash_score_py(*args) probe_clash_score_py = _coot.probe_clash_score_py def probe_clash_score_as_py(*args): return _coot.probe_clash_score_as_py(*args) probe_clash_score_as_py = _coot.probe_clash_score_as_py def probe_clash_score_from_py(*args): return _coot.probe_clash_score_from_py(*args) probe_clash_score_from_py = _coot.probe_clash_score_from_py def coot_version(): return _coot.coot_version() coot_version = _coot.coot_version def coot_version_extra_info(): return _coot.coot_version_extra_info() coot_version_extra_info = _coot.coot_version_extra_info def get_monomer(*args): return _coot.get_monomer(*args) get_monomer = _coot.get_monomer def get_monomer_from_dictionary(*args): return _coot.get_monomer_from_dictionary(*args) get_monomer_from_dictionary = _coot.get_monomer_from_dictionary def globularize(*args): return _coot.globularize(*args) globularize = _coot.globularize class phenix_geo_bond(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, phenix_geo_bond, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, phenix_geo_bond, name) __repr__ = _swig_repr __swig_setmethods__["atom_1"] = _coot.phenix_geo_bond_atom_1_set __swig_getmethods__["atom_1"] = _coot.phenix_geo_bond_atom_1_get if _newclass:atom_1 = _swig_property(_coot.phenix_geo_bond_atom_1_get, _coot.phenix_geo_bond_atom_1_set) __swig_setmethods__["atom_2"] = _coot.phenix_geo_bond_atom_2_set __swig_getmethods__["atom_2"] = _coot.phenix_geo_bond_atom_2_get if _newclass:atom_2 = _swig_property(_coot.phenix_geo_bond_atom_2_get, _coot.phenix_geo_bond_atom_2_set) __swig_setmethods__["ideal"] = _coot.phenix_geo_bond_ideal_set __swig_getmethods__["ideal"] = _coot.phenix_geo_bond_ideal_get if _newclass:ideal = _swig_property(_coot.phenix_geo_bond_ideal_get, _coot.phenix_geo_bond_ideal_set) __swig_setmethods__["model"] = _coot.phenix_geo_bond_model_set __swig_getmethods__["model"] = _coot.phenix_geo_bond_model_get if _newclass:model = _swig_property(_coot.phenix_geo_bond_model_get, _coot.phenix_geo_bond_model_set) __swig_setmethods__["delta"] = _coot.phenix_geo_bond_delta_set __swig_getmethods__["delta"] = _coot.phenix_geo_bond_delta_get if _newclass:delta = _swig_property(_coot.phenix_geo_bond_delta_get, _coot.phenix_geo_bond_delta_set) __swig_setmethods__["sigma"] = _coot.phenix_geo_bond_sigma_set __swig_getmethods__["sigma"] = _coot.phenix_geo_bond_sigma_get if _newclass:sigma = _swig_property(_coot.phenix_geo_bond_sigma_get, _coot.phenix_geo_bond_sigma_set) __swig_setmethods__["weight"] = _coot.phenix_geo_bond_weight_set __swig_getmethods__["weight"] = _coot.phenix_geo_bond_weight_get if _newclass:weight = _swig_property(_coot.phenix_geo_bond_weight_get, _coot.phenix_geo_bond_weight_set) __swig_setmethods__["residual"] = _coot.phenix_geo_bond_residual_set __swig_getmethods__["residual"] = _coot.phenix_geo_bond_residual_get if _newclass:residual = _swig_property(_coot.phenix_geo_bond_residual_get, _coot.phenix_geo_bond_residual_set) __swig_setmethods__["geom_set_flag"] = _coot.phenix_geo_bond_geom_set_flag_set __swig_getmethods__["geom_set_flag"] = _coot.phenix_geo_bond_geom_set_flag_get if _newclass:geom_set_flag = _swig_property(_coot.phenix_geo_bond_geom_set_flag_get, _coot.phenix_geo_bond_geom_set_flag_set) def __init__(self, *args): this = _coot.new_phenix_geo_bond(*args) try: self.this.append(this) except: self.this = this def set_geom(self, *args): return _coot.phenix_geo_bond_set_geom(self, *args) __swig_destroy__ = _coot.delete_phenix_geo_bond __del__ = lambda self : None; phenix_geo_bond_swigregister = _coot.phenix_geo_bond_swigregister phenix_geo_bond_swigregister(phenix_geo_bond) def __lshift__(*args): return _coot.__lshift__(*args) __lshift__ = _coot.__lshift__ class phenix_geo_bonds(_object): __swig_setmethods__ = {} __setattr__ = lambda self, name, value: _swig_setattr(self, phenix_geo_bonds, name, value) __swig_getmethods__ = {} __getattr__ = lambda self, name: _swig_getattr(self, phenix_geo_bonds, name) __repr__ = _swig_repr __swig_setmethods__["bonds"] = _coot.phenix_geo_bonds_bonds_set __swig_getmethods__["bonds"] = _coot.phenix_geo_bonds_bonds_get if _newclass:bonds = _swig_property(_coot.phenix_geo_bonds_bonds_get, _coot.phenix_geo_bonds_bonds_set) def __init__(self, *args): this = _coot.new_phenix_geo_bonds(*args) try: self.this.append(this) except: self.this = this def size(self): return _coot.phenix_geo_bonds_size(self) def add_bond(self, *args): return _coot.phenix_geo_bonds_add_bond(self, *args) __swig_destroy__ = _coot.delete_phenix_geo_bonds __del__ = lambda self : None; phenix_geo_bonds_swigregister = _coot.phenix_geo_bonds_swigregister phenix_geo_bonds_swigregister(phenix_geo_bonds)