# This file was automatically generated by SWIG (http://www.swig.org).
# Version 3.0.6
#
# Do not make changes to this file unless you know what you are doing--modify
# the SWIG interface file instead.





from sys import version_info
if version_info >= (2, 6, 0):
    def swig_import_helper():
        from os.path import dirname
        import imp
        fp = None
        try:
            fp, pathname, description = imp.find_module('_sequence_util', [dirname(__file__)])
        except ImportError:
            import _sequence_util
            return _sequence_util
        if fp is not None:
            try:
                _mod = imp.load_module('_sequence_util', fp, pathname, description)
            finally:
                fp.close()
            return _mod
    _sequence_util = swig_import_helper()
    del swig_import_helper
else:
    import _sequence_util
del version_info
try:
    _swig_property = property
except NameError:
    pass  # Python < 2.2 doesn't have 'property'.


def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
    if (name == "thisown"):
        return self.this.own(value)
    if (name == "this"):
        if type(value).__name__ == 'SwigPyObject':
            self.__dict__[name] = value
            return
    method = class_type.__swig_setmethods__.get(name, None)
    if method:
        return method(self, value)
    if (not static):
        if _newclass:
            object.__setattr__(self, name, value)
        else:
            self.__dict__[name] = value
    else:
        raise AttributeError("You cannot add attributes to %s" % self)


def _swig_setattr(self, class_type, name, value):
    return _swig_setattr_nondynamic(self, class_type, name, value, 0)


def _swig_getattr_nondynamic(self, class_type, name, static=1):
    if (name == "thisown"):
        return self.this.own()
    method = class_type.__swig_getmethods__.get(name, None)
    if method:
        return method(self)
    if (not static):
        return object.__getattr__(self, name)
    else:
        raise AttributeError(name)

def _swig_getattr(self, class_type, name):
    return _swig_getattr_nondynamic(self, class_type, name, 0)


def _swig_repr(self):
    try:
        strthis = "proxy of " + self.this.__repr__()
    except:
        strthis = ""
    return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)

try:
    _object = object
    _newclass = 1
except AttributeError:
    class _object:
        pass
    _newclass = 0


class SwigPyIterator(_object):
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, SwigPyIterator, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, SwigPyIterator, name)

    def __init__(self, *args, **kwargs):
        raise AttributeError("No constructor defined - class is abstract")
    __repr__ = _swig_repr
    __swig_destroy__ = _sequence_util.delete_SwigPyIterator
    __del__ = lambda self: None

    def value(self):
        return _sequence_util.SwigPyIterator_value(self)

    def incr(self, n=1):
        return _sequence_util.SwigPyIterator_incr(self, n)

    def decr(self, n=1):
        return _sequence_util.SwigPyIterator_decr(self, n)

    def distance(self, x):
        return _sequence_util.SwigPyIterator_distance(self, x)

    def equal(self, x):
        return _sequence_util.SwigPyIterator_equal(self, x)

    def copy(self):
        return _sequence_util.SwigPyIterator_copy(self)

    def next(self):
        return _sequence_util.SwigPyIterator_next(self)

    def __next__(self):
        return _sequence_util.SwigPyIterator___next__(self)

    def previous(self):
        return _sequence_util.SwigPyIterator_previous(self)

    def advance(self, n):
        return _sequence_util.SwigPyIterator_advance(self, n)

    def __eq__(self, x):
        return _sequence_util.SwigPyIterator___eq__(self, x)

    def __ne__(self, x):
        return _sequence_util.SwigPyIterator___ne__(self, x)

    def __iadd__(self, n):
        return _sequence_util.SwigPyIterator___iadd__(self, n)

    def __isub__(self, n):
        return _sequence_util.SwigPyIterator___isub__(self, n)

    def __add__(self, n):
        return _sequence_util.SwigPyIterator___add__(self, n)

    def __sub__(self, *args):
        return _sequence_util.SwigPyIterator___sub__(self, *args)
    def __iter__(self):
        return self
SwigPyIterator_swigregister = _sequence_util.SwigPyIterator_swigregister
SwigPyIterator_swigregister(SwigPyIterator)

class intp(_object):
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, intp, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, intp, name)
    __repr__ = _swig_repr

    def __init__(self):
        this = _sequence_util.new_intp()
        try:
            self.this.append(this)
        except:
            self.this = this
    __swig_destroy__ = _sequence_util.delete_intp
    __del__ = lambda self: None

    def assign(self, value):
        return _sequence_util.intp_assign(self, value)

    def value(self):
        return _sequence_util.intp_value(self)

    def cast(self):
        return _sequence_util.intp_cast(self)
    __swig_getmethods__["frompointer"] = lambda x: _sequence_util.intp_frompointer
    if _newclass:
        frompointer = staticmethod(_sequence_util.intp_frompointer)
intp_swigregister = _sequence_util.intp_swigregister
intp_swigregister(intp)

def intp_frompointer(t):
    return _sequence_util.intp_frompointer(t)
intp_frompointer = _sequence_util.intp_frompointer

class doublep(_object):
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, doublep, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, doublep, name)
    __repr__ = _swig_repr

    def __init__(self):
        this = _sequence_util.new_doublep()
        try:
            self.this.append(this)
        except:
            self.this = this
    __swig_destroy__ = _sequence_util.delete_doublep
    __del__ = lambda self: None

    def assign(self, value):
        return _sequence_util.doublep_assign(self, value)

    def value(self):
        return _sequence_util.doublep_value(self)

    def cast(self):
        return _sequence_util.doublep_cast(self)
    __swig_getmethods__["frompointer"] = lambda x: _sequence_util.doublep_frompointer
    if _newclass:
        frompointer = staticmethod(_sequence_util.doublep_frompointer)
doublep_swigregister = _sequence_util.doublep_swigregister
doublep_swigregister(doublep)

def doublep_frompointer(t):
    return _sequence_util.doublep_frompointer(t)
doublep_frompointer = _sequence_util.doublep_frompointer

class floatp(_object):
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, floatp, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, floatp, name)
    __repr__ = _swig_repr

    def __init__(self):
        this = _sequence_util.new_floatp()
        try:
            self.this.append(this)
        except:
            self.this = this
    __swig_destroy__ = _sequence_util.delete_floatp
    __del__ = lambda self: None

    def assign(self, value):
        return _sequence_util.floatp_assign(self, value)

    def value(self):
        return _sequence_util.floatp_value(self)

    def cast(self):
        return _sequence_util.floatp_cast(self)
    __swig_getmethods__["frompointer"] = lambda x: _sequence_util.floatp_frompointer
    if _newclass:
        frompointer = staticmethod(_sequence_util.floatp_frompointer)
floatp_swigregister = _sequence_util.floatp_swigregister
floatp_swigregister(floatp)

def floatp_frompointer(t):
    return _sequence_util.floatp_frompointer(t)
floatp_frompointer = _sequence_util.floatp_frompointer

class inta(_object):
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, inta, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, inta, name)
    __repr__ = _swig_repr

    def __init__(self, nelements):
        this = _sequence_util.new_inta(nelements)
        try:
            self.this.append(this)
        except:
            self.this = this
    __swig_destroy__ = _sequence_util.delete_inta
    __del__ = lambda self: None

    def __getitem__(self, index):
        return _sequence_util.inta___getitem__(self, index)

    def __setitem__(self, index, value):
        return _sequence_util.inta___setitem__(self, index, value)

    def cast(self):
        return _sequence_util.inta_cast(self)
    __swig_getmethods__["frompointer"] = lambda x: _sequence_util.inta_frompointer
    if _newclass:
        frompointer = staticmethod(_sequence_util.inta_frompointer)
inta_swigregister = _sequence_util.inta_swigregister
inta_swigregister(inta)

def inta_frompointer(t):
    return _sequence_util.inta_frompointer(t)
inta_frompointer = _sequence_util.inta_frompointer

class doublea(_object):
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, doublea, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, doublea, name)
    __repr__ = _swig_repr

    def __init__(self, nelements):
        this = _sequence_util.new_doublea(nelements)
        try:
            self.this.append(this)
        except:
            self.this = this
    __swig_destroy__ = _sequence_util.delete_doublea
    __del__ = lambda self: None

    def __getitem__(self, index):
        return _sequence_util.doublea___getitem__(self, index)

    def __setitem__(self, index, value):
        return _sequence_util.doublea___setitem__(self, index, value)

    def cast(self):
        return _sequence_util.doublea_cast(self)
    __swig_getmethods__["frompointer"] = lambda x: _sequence_util.doublea_frompointer
    if _newclass:
        frompointer = staticmethod(_sequence_util.doublea_frompointer)
doublea_swigregister = _sequence_util.doublea_swigregister
doublea_swigregister(doublea)

def doublea_frompointer(t):
    return _sequence_util.doublea_frompointer(t)
doublea_frompointer = _sequence_util.doublea_frompointer

class floata(_object):
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, floata, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, floata, name)
    __repr__ = _swig_repr

    def __init__(self, nelements):
        this = _sequence_util.new_floata(nelements)
        try:
            self.this.append(this)
        except:
            self.this = this
    __swig_destroy__ = _sequence_util.delete_floata
    __del__ = lambda self: None

    def __getitem__(self, index):
        return _sequence_util.floata___getitem__(self, index)

    def __setitem__(self, index, value):
        return _sequence_util.floata___setitem__(self, index, value)

    def cast(self):
        return _sequence_util.floata_cast(self)
    __swig_getmethods__["frompointer"] = lambda x: _sequence_util.floata_frompointer
    if _newclass:
        frompointer = staticmethod(_sequence_util.floata_frompointer)
floata_swigregister = _sequence_util.floata_swigregister
floata_swigregister(floata)

def floata_frompointer(t):
    return _sequence_util.floata_frompointer(t)
floata_frompointer = _sequence_util.floata_frompointer

import mmut
import atom_util

_sequence_util.SEQUENCE_CONSERVE_FULL_swigconstant(_sequence_util)
SEQUENCE_CONSERVE_FULL = _sequence_util.SEQUENCE_CONSERVE_FULL

_sequence_util.SEQUENCE_CONSERVE_PARTIAL_swigconstant(_sequence_util)
SEQUENCE_CONSERVE_PARTIAL = _sequence_util.SEQUENCE_CONSERVE_PARTIAL

_sequence_util.SEQUENCE_CONSERVE_LESS_PARTIAL_swigconstant(_sequence_util)
SEQUENCE_CONSERVE_LESS_PARTIAL = _sequence_util.SEQUENCE_CONSERVE_LESS_PARTIAL

_sequence_util.SEQUENCE_CONSERVE_NOT_swigconstant(_sequence_util)
SEQUENCE_CONSERVE_NOT = _sequence_util.SEQUENCE_CONSERVE_NOT

def ApplySequenceConservationUDDs(*args):
    return _sequence_util.ApplySequenceConservationUDDs(*args)
ApplySequenceConservationUDDs = _sequence_util.ApplySequenceConservationUDDs

def GetSequenceConservationACV(molHnd, selHnd, continuous):
    return _sequence_util.GetSequenceConservationACV(molHnd, selHnd, continuous)
GetSequenceConservationACV = _sequence_util.GetSequenceConservationACV

def GetSequenceConservationACVFromScores(contConservScores):
    return _sequence_util.GetSequenceConservationACVFromScores(contConservScores)
GetSequenceConservationACVFromScores = _sequence_util.GetSequenceConservationACVFromScores
# This file is compatible with both classic and new-style classes.