README.rst setup.py bin/conkit-convert bin/conkit-msatool bin/conkit-plot bin/conkit-precision bin/conkit-predict conkit/__init__.py conkit/version.py conkit.egg-info/PKG-INFO conkit.egg-info/SOURCES.txt conkit.egg-info/dependency_links.txt conkit.egg-info/not-zip-safe conkit.egg-info/requires.txt conkit.egg-info/top_level.txt conkit/applications/__init__.py conkit/applications/bbcontacts.py conkit/applications/ccmpred.py conkit/applications/cdhit.py conkit/applications/hhblits.py conkit/applications/hhfilter.py conkit/applications/jackhmmer.py conkit/applications/psicov.py conkit/command_line/__init__.py conkit/command_line/conkit_convert.py conkit/command_line/conkit_msatool.py conkit/command_line/conkit_plot.py conkit/command_line/conkit_precision.py conkit/command_line/conkit_predict.py conkit/core/__init__.py conkit/core/_entity.py conkit/core/_struct.py conkit/core/contact.py conkit/core/contactfile.py conkit/core/contactmap.py conkit/core/sequence.py conkit/core/sequencefile.py conkit/io/__init__.py conkit/io/_cache.py conkit/io/_iotools.py conkit/io/_parser.py conkit/io/a3m.py conkit/io/bbcontacts.py conkit/io/bclcontact.py conkit/io/casp.py conkit/io/ccmpred.py conkit/io/comsat.py conkit/io/epcmap.py conkit/io/evfold.py conkit/io/fasta.py conkit/io/freecontact.py conkit/io/gremlin.py conkit/io/jones.py conkit/io/membrain.py conkit/io/pcons.py conkit/io/pdb.py conkit/io/plmdca.py conkit/io/psicov.py conkit/io/stockholm.py conkit/plot/__init__.py conkit/plot/_figure.py conkit/plot/_plottools.py conkit/plot/contactdensity.py conkit/plot/contactmap.py conkit/plot/contactmapchord.py conkit/plot/precisionevaluation.py conkit/plot/sequencecoverage.py