MANIFEST.in README setup.cfg setup.py bin/giant.calculate_phase_differences bin/giant.cluster_mtzs_and_pdbs bin/giant.convert_to_intensities bin/giant.create_occupancy_params bin/giant.initial_pandda_refine bin/giant.insert_f000 bin/giant.local_align bin/giant.merge_conformations bin/giant.mtz.merge bin/giant.mtz.summarise bin/giant.quick_refine bin/giant.reindex_mtzs bin/giant.run.dimple bin/giant.run.refmac bin/giant.score_model bin/giant.score_model_multiple bin/giant.score_model_set bin/giant.set_conformer_occupancies bin/giant.strip_conformations bin/giant.transform bin/pandda.analyse bin/pandda.clean bin/pandda.configure_ccp4 bin/pandda.export bin/pandda.inspect bin/pandda.migrate bin/pandda.progress bin/pandda.show_summary lib-python/bamboo/__init__.py lib-python/bamboo/constants.py lib-python/bamboo/html.py lib-python/bamboo/analysis/__init__.py lib-python/bamboo/analysis/angles.py lib-python/bamboo/analysis/coords.py lib-python/bamboo/analysis/fragment.py lib-python/bamboo/common/__init__.py lib-python/bamboo/common/colours.py lib-python/bamboo/common/command.py lib-python/bamboo/common/data.py lib-python/bamboo/common/errors.py lib-python/bamboo/common/file.py lib-python/bamboo/common/logs.py lib-python/bamboo/common/masks.py lib-python/bamboo/common/online.py lib-python/bamboo/common/parser.py lib-python/bamboo/common/path.py lib-python/bamboo/common/status.py lib-python/bamboo/edstats/__init__.py lib-python/bamboo/edstats/utils.py lib-python/bamboo/macro/__init__.py lib-python/bamboo/macro/isolate.py lib-python/bamboo/macro/molecule.py lib-python/bamboo/macro/utils.py lib-python/bamboo/maps/__init__.py lib-python/bamboo/maps/convert.py lib-python/bamboo/maps/masking.py lib-python/bamboo/maps/utils.py lib-python/bamboo/maths/__init__.py lib-python/bamboo/maths/angles.py lib-python/bamboo/misc/__init__.py lib-python/bamboo/misc/__init__.pyc lib-python/bamboo/misc/mlfsom.tar.gz lib-python/bamboo/plot/__init__.py lib-python/bamboo/plot/bar.py lib-python/bamboo/plot/radar.py lib-python/bamboo/plot/simple.py lib-python/bamboo/plot/tree.py lib-python/bamboo/pymol_utils/__init__.py lib-python/bamboo/pymol_utils/shapes.py lib-python/bamboo/rdkit_utils/__init__.py lib-python/bamboo/rdkit_utils/mol.py lib-python/bamboo/rdkit_utils/smile.py lib-python/bamboo/rdkit_utils/bonds/__init__.py lib-python/bamboo/rdkit_utils/bonds/dihedral.py lib-python/bamboo/rdkit_utils/bonds/fragment.py lib-python/bamboo/rdkit_utils/bonds/rotate.py lib-python/bamboo/rdkit_utils/contacts/__init__.py lib-python/bamboo/rdkit_utils/contacts/utils.py lib-python/bamboo/rdkit_utils/coords/__init__.py lib-python/bamboo/rdkit_utils/coords/utils.py lib-python/bamboo/stats/__init__.py lib-python/bamboo/stats/cluster.py lib-python/bamboo/stats/networks.py lib-python/bamboo/templates/__init__.py lib-python/bamboo/templates/summary_page.html lib-python/bamboo/test/__init__.py lib-python/bamboo/utils/__init__.py lib-python/bamboo/utils/ligand.py lib-python/bamboo/utils/mtz.py lib-python/bamboo/utils/pdb.py lib-python/bamboo/wrappers/__init__.py lib-python/bamboo/wrappers/bfactorutils.py lib-python/bamboo/wrappers/cifutils.py lib-python/bamboo/wrappers/maputils.py lib-python/bamboo/wrappers/mlfsom.py lib-python/bamboo/wrappers/mtzutils.py lib-python/bamboo/wrappers/pdbutils.py lib-python/bamboo/wrappers/program_selector.py lib-python/bamboo/wrappers/symutils.py lib-python/bamboo/wrappers/coot/__init__.py lib-python/bamboo/wrappers/coot/scripts.py lib-python/bamboo/wrappers/coot/utils.py lib-python/bamboo/wrappers/ligand_builders/__init__.py lib-python/bamboo/wrappers/ligand_builders/elbow.py lib-python/bamboo/wrappers/ligand_builders/grade.py lib-python/bamboo/wrappers/ligand_builders/prodrg.py lib-python/bamboo/wrappers/ligand_builders/writedict.py lib-python/bamboo/wrappers/ligand_fitters/__init__.py lib-python/bamboo/wrappers/ligand_fitters/arpwarp.py lib-python/bamboo/wrappers/ligand_fitters/flynn.py lib-python/bamboo/wrappers/ligand_fitters/ligandfit.py lib-python/bamboo/wrappers/ligand_fitters/rhofit.py lib-python/bamboo/wrappers/refiners/__init__.py lib-python/bamboo/wrappers/refiners/refmac.py lib-python/bamboo/xray/__init__.py lib-python/bamboo/xray/cryst.py lib-python/bamboo/xray/symmetry.py lib-python/giant/__init__.py lib-python/giant/html.py lib-python/giant/manager.py lib-python/giant/phil.py lib-python/giant/graphics/__init__.py lib-python/giant/graphics/image_blobs.py lib-python/giant/grid/__init__.py lib-python/giant/grid/masks.py lib-python/giant/grid/utils.py lib-python/giant/jiffies/__init__.py lib-python/giant/jiffies/calculate_phase_differences.py lib-python/giant/jiffies/cluster_mtzs_and_pdbs.py lib-python/giant/jiffies/convert_to_intensities.py lib-python/giant/jiffies/create_occupancy_params.py lib-python/giant/jiffies/initial_pandda_refine.py lib-python/giant/jiffies/insert_f000.py lib-python/giant/jiffies/local_align.py lib-python/giant/jiffies/merge_conformations.py lib-python/giant/jiffies/mtz_merge.py lib-python/giant/jiffies/mtz_summarise.py lib-python/giant/jiffies/quick_refine.py lib-python/giant/jiffies/reduce_ensemble.py lib-python/giant/jiffies/reindex_mtzs.py lib-python/giant/jiffies/run_dimple.py lib-python/giant/jiffies/run_refmac.py lib-python/giant/jiffies/score_model.py lib-python/giant/jiffies/score_model_multiple.py lib-python/giant/jiffies/score_model_set.py lib-python/giant/jiffies/set_conformer_occupancies.py lib-python/giant/jiffies/strip_conformations.py lib-python/giant/jiffies/transform.py lib-python/giant/ligands/__init__.py lib-python/giant/ligands/utils.py lib-python/giant/maths/__init__.py lib-python/giant/maths/geometry.py lib-python/giant/misc/__init__.py lib-python/giant/misc/perturb.py lib-python/giant/stats/__init__.py lib-python/giant/stats/cluster.py lib-python/giant/stats/ospina.py lib-python/giant/stats/statistical_tests.py lib-python/giant/stats/utils.py lib-python/giant/structure/__init__.py lib-python/giant/structure/align.py lib-python/giant/structure/b_factors.py lib-python/giant/structure/dihedrals.py lib-python/giant/structure/ensembles.py lib-python/giant/structure/html.py lib-python/giant/structure/iterators.py lib-python/giant/structure/occupancy.py lib-python/giant/structure/quality.py lib-python/giant/structure/select.py lib-python/giant/structure/summary.py lib-python/giant/structure/utils.py lib-python/giant/templates/__init__.py lib-python/giant/templates/__init__.pyc lib-python/giant/utils/__init__.py lib-python/giant/utils/arrays.py lib-python/giant/utils/pdb.py lib-python/giant/xray/__init__.py lib-python/giant/xray/edstats.py lib-python/giant/xray/symmetry.py lib-python/giant/xray/unit_cell.py lib-python/giant/xray/data/__init__.py lib-python/giant/xray/data/cluster.py lib-python/giant/xray/data/utils.py lib-python/giant/xray/maps/__init__.py lib-python/giant/xray/maps/bdc.py lib-python/giant/xray/maps/utils.py lib-python/giant/xray/miller/__init__.py lib-python/giant/xray/miller/scaling.py lib-python/giant/xray/miller/utils.py lib-python/pandda/__init__.py lib-python/pandda/analyse.py lib-python/pandda/analyse_graphs.py lib-python/pandda/analyse_html.py lib-python/pandda/analyse_main.py lib-python/pandda/constants.py lib-python/pandda/events.py lib-python/pandda/handlers.py lib-python/pandda/holders.py lib-python/pandda/html.py lib-python/pandda/inspect.py lib-python/pandda/inspect_html.py lib-python/pandda/lists.py lib-python/pandda/misc.py lib-python/pandda/old_code.py lib-python/pandda/phil.py lib-python/pandda/settings.py lib-python/pandda/summary.py lib-python/pandda/jiffies/__init__.py lib-python/pandda/jiffies/pandda_clean.py lib-python/pandda/jiffies/pandda_export.py lib-python/pandda/jiffies/pandda_migrate.py lib-python/pandda/jiffies/pandda_summary.py lib-python/pandda/jiffies/transform_coordinates.py lib-python/pandda/templates/__init__.py lib-python/pandda/templates/ccp4mg-pic.py lib-python/pandda/templates/load_pandda_maps.pml lib-python/pandda/templates/pandda_summary.html lib-python/panddas.egg-info/PKG-INFO lib-python/panddas.egg-info/SOURCES.txt lib-python/panddas.egg-info/dependency_links.txt lib-python/panddas.egg-info/requires.txt lib-python/panddas.egg-info/top_level.txt lib-python/pandemic/__init__.py