#include <string>
#include <iostream>
#include <iomanip>

#include "TROOT.h"
#include "TFile.h"
#include "TH1D.h"

#include "JPhysics/JPDF.hh"
#include "JPhysics/Antares.hh"
#include "JPhysics/KM3NeT.hh"
#include "JTools/JSpline.hh"
#include "JTools/JQuantiles.hh"
#include "JTools/JAbstractHistogram.hh"
#include "JGeometry3D/JAngle3D.hh"
#include "Jeep/JPrint.hh"
#include "Jeep/JParser.hh"
#include "Jeep/JMessage.hh"


/**
 * Scaling of absorption and scattering length.
 */
double absorptionLengthFactor;
double scatteringLengthFactor;

inline double getAbsorptionLength(const double lambda)
{
  return absorptionLengthFactor * NAMESPACE::getAbsorptionLength(lambda);
}


inline double getScatteringLength(const double lambda)
{
  return scatteringLengthFactor * NAMESPACE::getScatteringLength(lambda);
}


/**
 * \file
 *
 * Auxiliary program to draw PDF of Cherenkov light from EM-shower including shower profile.
 * \author mdejong
 */
int main(int argc, char **argv)
{
  using namespace std;
  using namespace JPP;

  typedef JAbstractHistogram<double> JHistogram_t;

  string        outputFile;
  int           numberOfPoints;
  double        epsilon;
  double        E;
  double        D;
  double        cd;
  JAngle3D      dir;
  vector<int>   function;
  JHistogram_t  histogram;
  int           debug;

  try { 

    JParser<> zap("Auxiliary program to draw PDF of Cherenkov light from EM-shower including shower profile.");

    zap['o'] = make_field(outputFile)                                           = "pde.root";
    zap['n'] = make_field(numberOfPoints,         "points for integration")     = 25;
    zap['e'] = make_field(epsilon,                "precision for integration")  = 1.0e-10;
    zap['A'] = make_field(absorptionLengthFactor, "scaling factor")             = 1.0;
    zap['S'] = make_field(scatteringLengthFactor, "scaling factor")             = 1.0;
    zap['E'] = make_field(E,                      "shower energy [GeV]");
    zap['R'] = make_field(D,                      "distance [m]");
    zap['c'] = make_field(cd,                     "cosine emission angle");
    zap['D'] = make_field(dir,                    "(theta, phi) of PMT [rad]");
    zap['F'] = make_field(function,               "PDF type");
    zap['H'] = make_field(histogram,              "histogram binning")          = JHistogram_t();
    zap['d'] = make_field(debug)                  = 0;

    zap(argc, argv);
  }
  catch(const exception &error) {
    FATAL(error.what() << endl);
  }


  const JPDF_C
    pdf(NAMESPACE::getPhotocathodeArea(),
        NAMESPACE::getQE,
        NAMESPACE::getAngularAcceptance,
        getAbsorptionLength,
        getScatteringLength,
        NAMESPACE::getScatteringProbability,
	NAMESPACE::getAmbientPressure(),
	getMinimalWavelength(),
	getMaximalWavelength(),
        numberOfPoints,
        epsilon);


  if (outputFile == "") {

    for (double dt; cin >> dt; ) {

      for (vector<int>::const_iterator F = function.begin(); F != function.end(); ++F) {

	cout << setw(2)         << *F             << ' '
	     << SCIENTIFIC(7,1) << E              << ' '
	     << FIXED(5,1)      << D              << ' '
	     << FIXED(5,2)      << cd             << ' '
	     << FIXED(5,2)      << dir.getTheta() << ' '
	     << FIXED(5,2)      << dir.getPhi()   << ' '
	     << FIXED(5,1)      << dt             << ' '
	     << SCIENTIFIC(9,3) << pdf.getLightFromEMshower(*F, E, D, cd, dir.getTheta(), dir.getPhi(), dt) * E << endl;
      }
    }

    return 0;
  }


  TFile out(outputFile.c_str(), "recreate");
 
  const double t0   =  D * getIndexOfRefraction() / C;        // time [ns]
  //const double t0   =  0.0;                                   // time [ns]
 
  if (!histogram.is_valid()) {
    
    if (function.size() == 1 && function[0] == DIRECT_LIGHT_FROM_EMSHOWER) {

      histogram = JHistogram_t(t0 - 20.0, t0 + 50.0);

      histogram.setBinWidth(0.1);

    } else {

      histogram = JHistogram_t(t0 - 20.0, t0 + 500.0);

      histogram.setBinWidth(0.5);
    }
  }

  TH1D h0("h0", NULL, histogram.getNumberOfBins(), histogram.getLowerLimit(), histogram.getUpperLimit());
 
  JSplineFunction1D_t f1;
 
  for (int i = 1; i <= h0.GetNbinsX(); ++i) {

    const double dt = h0.GetBinCenter(i) - t0;

    double value = 0.0;

    for (vector<int>::const_iterator F = function.begin(); F != function.end(); ++F) {
      value += pdf.getLightFromEMshower(*F, E, D, cd, dir.getTheta(), dir.getPhi(), dt);
    }

    h0.SetBinContent(i, value);

    f1[dt] = value;
  }

  f1.compile();

  JQuantiles quantiles(f1);

  DEBUG("int  " << quantiles.getIntegral() << endl);
  DEBUG("x    " << quantiles.getX()        << endl);
  DEBUG("y    " << quantiles.getY()        << endl);
  DEBUG("FWHM " << quantiles.getFWHM()     << endl);
  

  out.Write();
  out.Close();
}