# -*- coding: utf-8 -*- # This software and supporting documentation are distributed by # Institut Federatif de Recherche 49 # CEA/NeuroSpin, Batiment 145, # 91191 Gif-sur-Yvette cedex # France # # This software is governed by the CeCILL license version 2 under # French law and abiding by the rules of distribution of free software. # You can use, modify and/or redistribute the software under the # terms of the CeCILL license version 2 as circulated by CEA, CNRS # and INRIA at the following URL "http://www.cecill.info". # # As a counterpart to the access to the source code and rights to copy, # modify and redistribute granted by the license, users are provided only # with a limited warranty and the software's author, the holder of the # economic rights, and the successive licensors have only limited # liability. # # In this respect, the user's attention is drawn to the risks associated # with loading, using, modifying and/or developing or reproducing the # software by the user in light of its specific status of free software, # that may mean that it is complicated to manipulate, and that also # therefore means that it is reserved for developers and experienced # professionals having in-depth computer knowledge. Users are therefore # encouraged to load and test the software's suitability as regards their # requirements in conditions enabling the security of their systems and/or # data to be ensured and, more generally, to use and operate it in the # same conditions as regards security. # # The fact that you are presently reading this means that you have had # knowledge of the CeCILL license version 2 and that you accept its terms. from brainvisa.processes import * from soma.path import find_in_path name = 'Sulci Labels consistency check' userLevel = 0 signature = Signature( 'sulci_graph', ReadDiskItem( 'Labelled Cortical folds graph', 'Graph' ), 'side', Choice( 'left', 'right', None ), 'labeling_type', Choice( ( 'Manual', 'name' ), ( 'Auto', 'label' ), None ), ) def initialization( self ): def linkSide( self, dummy ): if self.sulci_graph is not None: return self.sulci_graph.get( 'side' ) def linkLabelAtt( self, dummy ): if self.sulci_graph is not None: a = self.sulci_graph.get( 'automatically_labelled' ) if a is not None: if a == 'Yes': return 'label' elif a == 'No': return 'name' self.linkParameters( 'side', 'sulci_graph', linkSide ) self.linkParameters( 'labeling_type', 'sulci_graph', linkLabelAtt ) def execution( self, context ): cmd = [ sys.executable, find_in_path( 'sulciLabelConsistencyCheck.py' ), '-i', self.sulci_graph ] if self.side: cmd += [ '-s', self.side ] if self.labeling_type is not None: cmd += [ '-l', self.labeling_type ] context.system( *cmd )