# This software and supporting documentation are distributed by # Institut Federatif de Recherche 49 # CEA/NeuroSpin, Batiment 145, # 91191 Gif-sur-Yvette cedex # France # # This software is governed by the CeCILL license version 2 under # French law and abiding by the rules of distribution of free software. # You can use, modify and/or redistribute the software under the # terms of the CeCILL license version 2 as circulated by CEA, CNRS # and INRIA at the following URL "http://www.cecill.info". # # As a counterpart to the access to the source code and rights to copy, # modify and redistribute granted by the license, users are provided only # with a limited warranty and the software's author, the holder of the # economic rights, and the successive licensors have only limited # liability. # # In this respect, the user's attention is drawn to the risks associated # with loading, using, modifying and/or developing or reproducing the # software by the user in light of its specific status of free software, # that may mean that it is complicated to manipulate, and that also # therefore means that it is reserved for developers and experienced # professionals having in-depth computer knowledge. Users are therefore # encouraged to load and test the software's suitability as regards their # requirements in conditions enabling the security of their systems and/or # data to be ensured and, more generally, to use and operate it in the # same conditions as regards security. # # The fact that you are presently reading this means that you have had # knowledge of the CeCILL license version 2 and that you accept its terms. from brainvisa.processes import * import os, re import sys try: from soma import aims except: pass def validation(): try: from soma import aims except: raise ValisationError( 'no soma.aims module' ) name = 'Global graph property' userLevel = 2 signature = Signature( 'graph', ReadDiskItem( 'Graph', 'Graph', requiredAttributes = { 'graph_version' : '3.1' } ), 'property', String(), 'output_prefix', String() ) def execution( self, context ): subject = self.graph.get('subject') side = self.graph.get('side') self.output= self.output_prefix + self.property + '_' + subject + '_' + side + '.dat' context.write('Output file :' , self.output) reader = aims.Reader() ingraph = reader.read( self.graph.fullPath() ) val = ingraph[self.property] if self.output is not None : f = open( self.output, 'w' ) f.write( 'subject\tside' +'\t' + self.property + '\n' ) f.write( subject + '\t' + side + '\t' + str(val) + '\n' ) f.close()