# -*- coding: utf-8 -*- # This software and supporting documentation are distributed by # Institut Federatif de Recherche 49 # CEA/NeuroSpin, Batiment 145, # 91191 Gif-sur-Yvette cedex # France # # This software is governed by the CeCILL license version 2 under # French law and abiding by the rules of distribution of free software. # You can use, modify and/or redistribute the software under the # terms of the CeCILL license version 2 as circulated by CEA, CNRS # and INRIA at the following URL "http://www.cecill.info". # # As a counterpart to the access to the source code and rights to copy, # modify and redistribute granted by the license, users are provided only # with a limited warranty and the software's author, the holder of the # economic rights, and the successive licensors have only limited # liability. # # In this respect, the user's attention is drawn to the risks associated # with loading, using, modifying and/or developing or reproducing the # software by the user in light of its specific status of free software, # that may mean that it is complicated to manipulate, and that also # therefore means that it is reserved for developers and experienced # professionals having in-depth computer knowledge. Users are therefore # encouraged to load and test the software's suitability as regards their # requirements in conditions enabling the security of their systems and/or # data to be ensured and, more generally, to use and operate it in the # same conditions as regards security. # # The fact that you are presently reading this means that you have had # knowledge of the CeCILL license version 2 and that you accept its terms. from brainvisa.processes import * import shfjGlobals from brainvisa import anatomist name = 'Anatomist Show Graph' roles = ('viewer',) userLevel = 0 def validation(): anatomist.validation() signature = Signature( 'graph', ReadDiskItem( 'Data Graph', 'Graph' ), 'nomenclature', ReadDiskItem( 'Nomenclature', 'Hierarchy' ), 'anatomy', ReadDiskItem( 'T1 MRI', shfjGlobals.anatomistVolumeFormats ), 'meshes', ListOf( ReadDiskItem( 'Mesh', shfjGlobals.anatomistMeshFormats ) ), 'head_mesh', ReadDiskItem( 'Head mesh', shfjGlobals.anatomistMeshFormats ), ) def initialization( self ): def change_meshes( self, proc ): #yann# print 'change_meshes', self meshes = [] m = ReadDiskItem( 'Hemisphere mesh', shfjGlobals.anatomistMeshFormats ). \ findValue( self.graph ) if m is not None: meshes.append( m ) return meshes self.setOptional( 'nomenclature' ) self.setOptional( 'anatomy' ) self.setOptional( 'meshes' ) self.setOptional( 'head_mesh' ) self.linkParameters( 'anatomy', 'graph' ) self.nomenclature = self.signature[ 'nomenclature' ].findValue( {} ) self.linkParameters( 'head_mesh', 'graph' ) self.linkParameters( 'meshes', 'graph', change_meshes ) def execution( self, context ): a = anatomist.Anatomist() selfdestroy = [] obj = [] if self.nomenclature is not None: ( hie, br ) = context.runProcess( 'AnatomistShowNomenclature', read=self.nomenclature ) selfdestroy += ( hie, br ) obj.append( a.loadObject( self.graph ) ) if self.anatomy is not None: obj.append( a.loadObject( self.anatomy ) ) if self.meshes is not None: msh = map( lambda x: a.loadObject( x ), self.meshes ) obj += msh if self.head_mesh is not None: hd = a.loadObject( self.head_mesh ) obj.append( hd ) hd.setMaterial( a.Material(diffuse = [1, 0.85, 0.5, 0.5]) ) win3 = a.createWindow( '3D' ) win3.addObjects( obj, add_graph_nodes=True ) selfdestroy.append( win3 ) return selfdestroy + obj