# -*- coding: utf-8 -*- # This software and supporting documentation are distributed by # Institut Federatif de Recherche 49 # CEA/NeuroSpin, Batiment 145, # 91191 Gif-sur-Yvette cedex # France # # This software is governed by the CeCILL license version 2 under # French law and abiding by the rules of distribution of free software. # You can use, modify and/or redistribute the software under the # terms of the CeCILL license version 2 as circulated by CEA, CNRS # and INRIA at the following URL "http://www.cecill.info". # # As a counterpart to the access to the source code and rights to copy, # modify and redistribute granted by the license, users are provided only # with a limited warranty and the software's author, the holder of the # economic rights, and the successive licensors have only limited # liability. # # In this respect, the user's attention is drawn to the risks associated # with loading, using, modifying and/or developing or reproducing the # software by the user in light of its specific status of free software, # that may mean that it is complicated to manipulate, and that also # therefore means that it is reserved for developers and experienced # professionals having in-depth computer knowledge. Users are therefore # encouraged to load and test the software's suitability as regards their # requirements in conditions enabling the security of their systems and/or # data to be ensured and, more generally, to use and operate it in the # same conditions as regards security. # # The fact that you are presently reading this means that you have had # knowledge of the CeCILL license version 2 and that you accept its terms. from brainvisa.processes import * from brainvisa import anatomist name = 'Anatomist Show Symmetrized Folds Graph' #roles = ('viewer',) userLevel = 2 def validation(): anatomist.validation() signature = Signature( 'graph', ReadDiskItem( 'Cortical folds graph', 'Graph' ), 'nomenclature', ReadDiskItem( 'Nomenclature', 'Hierarchy' ), 'white_mesh', ReadDiskItem( 'Hemisphere White Mesh', 'Anatomist mesh formats' ), ) def initialization( self ): self.setOptional( 'nomenclature' ) self.setOptional( 'white_mesh' ) self.linkParameters( 'white_mesh', 'graph' ) self.nomenclature = self.signature[ 'nomenclature' ].findValue( {} ) def execution( self, context ): toload = [ self.graph ] if self.white_mesh is not None: toload.append( self.white_mesh ) selfdestroy = [] if self.nomenclature is not None: ( hie, br ) = context.runProcess( 'AnatomistShowNomenclature', read=self.nomenclature ) selfdestroy += ( hie, br ) objs = context.runProcess( 'AnatomistShowSymmetrizedData', items=toload ) a = anatomist.Anatomist() l = self.graph.get( 'automatically_labelled' ) context.write( 'automatically_labelled:', l ) nomenclatureprop = 'default' if l and l == 'Yes': nomenclatureprop = 'label' #a.setGraphParams( label_attribute='label', use_nomenclature=1 ) else: l = self.graph.get( 'manually_labelled' ) context.write( 'manually_labelled:', l ) if l and l == 'Yes': nomenclatureprop = 'name' #a.setGraphParams( label_attribute='name', use_nomenclature=1 ) graph = objs[0] win = objs[-1] win.addObjects( graph, add_graph_nodes=True ) context.write( 'nomenclature_property:', nomenclatureprop ) a.execute( 'GraphDisplayProperties', objects=[graph], nomenclature_property=nomenclatureprop ) selfdestroy += objs return selfdestroy