# This software and supporting documentation are distributed by # Institut Federatif de Recherche 49 # CEA/NeuroSpin, Batiment 145, # 91191 Gif-sur-Yvette cedex # France # # This software is governed by the CeCILL license version 2 under # French law and abiding by the rules of distribution of free software. # You can use, modify and/or redistribute the software under the # terms of the CeCILL license version 2 as circulated by CEA, CNRS # and INRIA at the following URL "http://www.cecill.info". # # As a counterpart to the access to the source code and rights to copy, # modify and redistribute granted by the license, users are provided only # with a limited warranty and the software's author, the holder of the # economic rights, and the successive licensors have only limited # liability. # # In this respect, the user's attention is drawn to the risks associated # with loading, using, modifying and/or developing or reproducing the # software by the user in light of its specific status of free software, # that may mean that it is complicated to manipulate, and that also # therefore means that it is reserved for developers and experienced # professionals having in-depth computer knowledge. Users are therefore # encouraged to load and test the software's suitability as regards their # requirements in conditions enabling the security of their systems and/or # data to be ensured and, more generally, to use and operate it in the # same conditions as regards security. # # The fact that you are presently reading this means that you have had # knowledge of the CeCILL license version 2 and that you accept its terms. from brainvisa.processes import * import shfjGlobals from brainvisa import anatomist name = 'Anatomist Show 3D Fusion' userLevel = 0 def validation(): anatomist.validation() signature = Signature( 'functional_volume', ReadDiskItem( '4D Volume', shfjGlobals.anatomistVolumeFormats ), 'mesh', ReadDiskItem( "Mesh", shfjGlobals.anatomistMeshFormats ), 'calculation_method', Choice( ( _t_( 'Point' ), 'point' ), ( _t_( 'Point shifted inside' ), 'point_offset_internal' ), ( _t_( 'Point shifted outside' ), 'point_offset_external' ), ( _t_( 'Line' ), 'line' ), ( _t_( 'Line internal' ), 'line_internal' ), ( _t_( 'Sphere' ), 'sphere' ), ), 'submethod', Choice( ( _t_( 'Maximum' ), 'max' ), ( _t_( 'Minimum' ), 'min' ), ( _t_( 'Mean' ), 'mean' ), ( _t_( 'Corrected mean' ), 'mean_corrected' ), ( _t_( 'Enhanced mean' ), 'mean_enhanced' ), ), 'depth', Float(), 'step', Float(), ) def initialization( self ): self.setOptional( 'depth' ) self.setOptional( 'step' ) def execution( self, context ): a = anatomist.Anatomist() mesh = a.loadObject( self.mesh ) func = a.loadObject( self.functional_volume ) func.setPalette( a.getPalette("Rainbow1-fusion") ) fusion = a.fusionObjects( [mesh, func], method='Fusion3DMethod' ) if self.functional_volume is not None \ and self.functional_volume.type.isA( 'Label Volume' ): a.execute("TexturingParams", objects=[fusion], interpolation = 'rgb' ) context.write( self.calculation_method ) if self.calculation_method != 'point' or self.submethod != 'max' \ or self.depth is not None or self.step is not None: a.execute("Fusion3DParams", object=fusion, method = self.calculation_method, submethod = self.submethod, depth = self.depth, step =self.step ) win = a.createWindow( '3D' ) win.addObjects( [fusion] ) return [ mesh, func, fusion, win ]