Label volume editor

Manual correction of a labels image or a mask using Anatomist's drawing module

Description

Select the image to modify, and trigger the treatment. Then press F1 with the mouse in Anatomist's window. Perform your corrections and press OK. NB: the drawing interface is still in progress... the conviviality has to be improved. A fewtricks:

• To get transparencies for all regions, select the neuro_something.arg in Anatomist interface and modify the color/material with the right click of the mouse (opacity slider)
• To alternate easily from one label to another, you can click on Anatomist's window selection mode (the arrow), click on the new label you want to edit in the slice, go back to drawing mode.

Parameters

label_volume: Label volume ( output )

volume to modify

support_volume: Raw T1 MRI ( optional, input )

background MRI to display under the drawn regions

pipeline_mask_nomenclature: Nomenclature ( optional, input )

regions names

background_label: OpenChoice ( input )

Technical information

Toolbox : Tools

User level : 0

Identifier : AnaLabelVolumeEditor

File name : brainvisa/toolboxes/tools/processes/roi/AnaLabelVolumeEditor.py

Supported file formats :

label_volume :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

support_volume :

GIS image, Z compressed GIS image, gz compressed GIS image, VIDA image, NIFTI-1 image, gz compressed ECAT i image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, gz compressed VIDA image, Z compressed VIDA image, Z compressed ECAT i image, gz compressed ECAT v image, ECAT i image, Z compressed ECAT v image, PNG image, JPEG image, MNG image, GIF image, Z compressed SPM image, SPM image, gz compressed SPM image, ECAT v image

pipeline_mask_nomenclature :

Hierarchy