Validation Pipeline

Control panel of the validation processes

Parameters

T1mri: Raw T1 MRI ( input )

validation_total: Choice ( input )

mri_corrected: T1 MRI Bias Corrected ( input )

validation_mri_corrected: Choice ( input )

histo_analysis: Histo Analysis ( optional, input )

validation_histo_analysis: Choice ( input )

brain_mask: T1 Brain Mask ( optional, input )

validation_brain_mask: Choice ( input )

split_mask: Split Brain Mask ( optional, input )

validation_split_mask: Choice ( input )

left_hemi_mesh: Left Hemisphere Mesh ( optional, input )

validation_left_hemi_mesh: Choice ( input )

right_hemi_mesh: Right Hemisphere Mesh ( optional, input )

validation_right_hemi_mesh: Choice ( input )

left_white_mesh: Left Hemisphere White Mesh ( optional, input )

validation_left_white_mesh: Choice ( input )

right_white_mesh: Right Hemisphere White Mesh ( optional, input )

validation_right_white_mesh: Choice ( input )

Technical information

Toolbox : Morphologist

User level : 0

Identifier : AnaValidateAll

File name : brainvisa/toolboxes/morphologist/processes/segmentationpipeline/components_obsolete/validation/AnaValidateAll.py

Supported file formats :

T1mri :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

mri_corrected :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

histo_analysis :

Histo Analysis

brain_mask :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

split_mask :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

left_hemi_mesh :

TRI mesh, PLY mesh, MESH mesh, GIFTI file, MNI OBJ mesh

right_hemi_mesh :

TRI mesh, PLY mesh, MESH mesh, GIFTI file, MNI OBJ mesh

left_white_mesh :

TRI mesh, PLY mesh, MESH mesh, GIFTI file, MNI OBJ mesh

right_white_mesh :

TRI mesh, PLY mesh, MESH mesh, GIFTI file, MNI OBJ mesh