Anatomist Show 3D Activations

None

Parameters

activations: fMRI activations ( input )

threshold: Number ( input )

minimumSize: Integer ( input )

mri: T1 MRI ( input )

show_mri: Choice ( input )

fmriTOmri: Transformation matrix ( optional, input )

activ_transparency: Number ( input )

head_mesh: Head Mesh ( optional, input )

head_transparency: Number ( optional, input )

brain_mesh: Brain Mesh ( optional, input )

brain_transparency: Number ( optional, input )

Technical information

Toolbox : Morphologist

User level : 1

Identifier : Anatomist3DActivations

File name : brainvisa/toolboxes/morphologist/processes/viewers/Anatomist3DActivations.py

Supported file formats :

activations :

GIS image, Z compressed GIS image, gz compressed GIS image, VIDA image, NIFTI-1 image, gz compressed ECAT i image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, gz compressed VIDA image, Z compressed VIDA image, Z compressed ECAT i image, gz compressed ECAT v image, ECAT i image, Z compressed ECAT v image, PNG image, JPEG image, MNG image, GIF image, Z compressed SPM image, SPM image, gz compressed SPM image, ECAT v image

mri :

GIS image, Z compressed GIS image, gz compressed GIS image, VIDA image, NIFTI-1 image, gz compressed ECAT i image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, gz compressed VIDA image, Z compressed VIDA image, Z compressed ECAT i image, gz compressed ECAT v image, ECAT i image, Z compressed ECAT v image, PNG image, JPEG image, MNG image, GIF image, Z compressed SPM image, SPM image, gz compressed SPM image, ECAT v image

fmriTOmri :

Transformation matrix

head_mesh :

TRI mesh, Z compressed TRI mesh, PLY mesh, gz compressed TRI mesh, MESH mesh, Z compressed MESH mesh, gz compressed MESH mesh, gz compressed PLY mesh, Z compressed PLY mesh, GIFTI file, Z compressed GIFTI file, MNI OBJ mesh, gz compressed GIFTI file, Z compressed MNI OBJ mesh, gz compressed MNI OBJ mesh

brain_mesh :

TRI mesh, Z compressed TRI mesh, PLY mesh, gz compressed TRI mesh, MESH mesh, Z compressed MESH mesh, gz compressed MESH mesh, gz compressed PLY mesh, Z compressed PLY mesh, GIFTI file, Z compressed GIFTI file, MNI OBJ mesh, gz compressed GIFTI file, Z compressed MNI OBJ mesh, gz compressed MNI OBJ mesh