Brain Mask Segmentation

None

Parameters

mri_corrected: T1 MRI Bias Corrected ( input )

brain_mask: T1 Brain Mask ( output )

histo_analysis: Histo Analysis ( input )

Commissure_coordinates: Commissure coordinates ( optional, input )

lesion_mask: Lesion Mask ( optional, input )

white_ridges: T1 MRI White Matter Ridges ( optional, input )

Technical information

Toolbox : Morphologist

User level : 2

Identifier : BrainSegmentationGeneral

File name : brainvisa/toolboxes/morphologist/processes/segmentationpipeline/components_obsolete/segmentation/BrainSegmentationGeneral.py

Supported file formats :

mri_corrected :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

brain_mask :

GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

histo_analysis :

Histo Analysis

Commissure_coordinates :

Commissure coordinates

lesion_mask :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

white_ridges :

GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image