Diffusion to Extended AC/PC referential

None

Parameters

t1_mri: Raw T1 MRI ( input )

commissure_coordinates: Commissure coordinates ( input )

t2_diffusion: Raw T2 Diffusion MR ( input )

dw_diffusion: Corrected DW Diffusion MR ( input )

t2_diffusion_to_t1_anatomy_transform: Transform T2 Diffusion MR to Raw T1 MRI ( output )

t1_anatomy_to_t2_diffusion_transform: Transform Raw T1 MRI to T2 Diffusion MR ( output )

t1_anatomy_to_acpc_t2_diffusion_transform: Transform Raw T1 MRI to AC/PC T2 Diffusion MR ( output )

t2_diffusion_to_acpc_t2_diffusion_transform: Transform T2 Diffusion MR to AC/PC T2 Diffusion MR ( output )

t1_anatomy_to_eacpc_t2_diffusion_transform: Transform Raw T1 MRI to Extended AC/PC T2 Diffusion MR ( output )

acpc_t2_diffusion_to_eacpc_t2_diffusion_transform: Transform AC/PC T2 Diffusion MR to Extended AC/PC T2 Diffusion MR ( output )

t2_diffusion_to_eacpc_t2_diffusion_transform: Transform T2 Diffusion MR to Extended AC/PC T2 Diffusion MR ( output )

eacpc_t1_mri: T1 MRI AC/PC oriented ( output )

eacpc_t2_diffusion: Extended AC/PC T2 Diffusion MR ( output )

eacpc_dw_diffusion: Extended AC/PC DW Diffusion MR ( output )

Technical information

Toolbox : Diffusion and Tracking

User level : 2

Identifier : DiffusionToACPCExtended

File name : brainvisa/toolboxes/connectomist/processes/AC-PC Alignment/DiffusionToACPCExtended.py

Supported file formats :

t1_mri :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

commissure_coordinates :

Commissure coordinates

t2_diffusion :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

dw_diffusion :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

t2_diffusion_to_t1_anatomy_transform :

Transformation matrix

t1_anatomy_to_t2_diffusion_transform :

Transformation matrix

t1_anatomy_to_acpc_t2_diffusion_transform :

Transformation matrix

t2_diffusion_to_acpc_t2_diffusion_transform :

Transformation matrix

t1_anatomy_to_eacpc_t2_diffusion_transform :

Transformation matrix

acpc_t2_diffusion_to_eacpc_t2_diffusion_transform :

Transformation matrix

t2_diffusion_to_eacpc_t2_diffusion_transform :

Transformation matrix

eacpc_t1_mri :

GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

eacpc_t2_diffusion :

GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

eacpc_dw_diffusion :

GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image