Anatomy Normalization (using FSL)

Normalization of the the anatomical image.

Parameters

anatomy_data: Raw T1 MRI ( input )
The anatomical data to normalise
anatomical_template: anatomical Template ( input )
The anatomical reference template (choose from our database)
Alignment: Choice ( input )
The type of alignment between the anatomical image and the template
transformation_matrix: FSL transformation ( output )
The resulting transformation matrix
normalized_anatomy_data: Raw T1 MRI ( output )
The resulting normalised image
cost_function: Choice ( input )
search_cost_function: Choice ( input )

Technical information

Toolbox : Morphologist

User level : 2

Identifier : Normalization_FSL

File name : brainvisa/toolboxes/morphologist/processes/registration/Normalization_FSL.py

Supported file formats :

anatomy_data :
NIFTI-1 image, gz compressed NIFTI-1 image
anatomical_template :
NIFTI-1 image, gz compressed NIFTI-1 image
transformation_matrix :
Matlab file
normalized_anatomy_data :
gz compressed NIFTI-1 image