Check Freesurfer files

Before to launch the Freesurfer outputs To BrainVISA conversion pipeline or Freesurfer outputs To BrainVISA conversion pipeline, Light version , you can check if all files have been generated. This process is not mandatory to run pipelines.

Parameters

leftPial: FreesurferType ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

leftWhite: FreesurferType ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

leftSphereReg: FreesurferType ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

leftThickness: FreesurferType ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

leftCurv: FreesurferType ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

leftAvgCurv: FreesurferType ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

leftCurvPial: FreesurferType ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

leftGyri: FreesurferGyriTexture ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

leftSulciGyri: FreesurferSulciGyriTexture ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

rightPial: FreesurferType ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

rightWhite: FreesurferType ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

rightSphereReg: FreesurferType ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

rightThickness: FreesurferType ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

rightCurv: FreesurferType ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

rightAvgCurv: FreesurferType ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

rightCurvPial: FreesurferType ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

rightGyri: FreesurferGyriTexture ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

rightSulciGyri: FreesurferSulciGyriTexture ( input )

Data computed either the "02 Launch Freesurfer full pipeline recon-all" process or directly by FreeSurfer.

Technical information

Toolbox : Freesurfer

User level : 1

Identifier : freesurferFilesExist

File name : brainvisa/toolboxes/freesurfer/processes/Tools/freesurferFilesExist.py

Supported file formats :

leftPial :

FreesurferPial

leftWhite :

FreesurferWhite

leftSphereReg :

FreesurferSphereReg

leftThickness :

FreesurferThickness

leftCurv :

FreesurferCurv

leftAvgCurv :

FreesurferAvgCurv

leftCurvPial :

FreesurferCurvPial

leftGyri :

FreesurferParcellation

leftSulciGyri :

FreesurferParcellation

rightPial :

FreesurferPial

rightWhite :

FreesurferWhite

rightSphereReg :

FreesurferSphereReg

rightThickness :

FreesurferThickness

rightCurv :

FreesurferCurv

rightAvgCurv :

FreesurferAvgCurv

rightCurvPial :

FreesurferCurvPial

rightGyri :

FreesurferParcellation

rightSulciGyri :

FreesurferParcellation