Import MNI CIVET Segmentation

None

Parameters

input_raw_t1_mri: Raw T1 MRI ( optional, input )

input_bias_corrected: T1 MRI Bias Corrected ( optional, input )

input_brain_mask: T1 Brain Mask ( optional, input )

input_grey_white: Grey White Mask ( optional, input )

input_T1_to_MNI_transformation: MINC transformation matrix ( optional, input )

output_raw_t1_mri: Raw T1 MRI ( output )

output_bias_corrected: T1 MRI Bias Corrected ( output )

output_T1_to_Talairach_transformation: Transform Raw T1 MRI to Talairach-AC/PC-Anatomist ( optional, output )

output_ACPC: Commissure coordinates ( optional, output )

output_brain_mask: T1 Brain Mask ( optional, output )

output_left_grey_white: Left Grey White Mask ( optional, output )

output_right_grey_white: Right Grey White Mask ( optional, output )

use_t1pipeline: Choice ( input )

Technical information

Toolbox : Morphologist

User level : 3

Identifier : importMNIcivetSegmentation

File name : brainvisa/toolboxes/morphologist/processes/import/importMNIcivetSegmentation.py

Supported file formats :

input_raw_t1_mri :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

input_bias_corrected :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

input_brain_mask :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

input_grey_white :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

input_T1_to_MNI_transformation :

MINC transformation matrix

output_raw_t1_mri :

GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

output_bias_corrected :

GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

output_T1_to_Talairach_transformation :

Transformation matrix

output_ACPC :

Commissure coordinates

output_brain_mask :

GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

output_left_grey_white :

GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

output_right_grey_white :

GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image