Anatomy Normalization (using AimsMIRegister)

None

Parameters

anatomy_data: Raw T1 MRI ( input )

anatomical_template: anatomical Template ( input )

transformation_to_template: Transformation matrix ( optional, output )

normalized_anatomy_data: Raw T1 MRI ( optional, output )

transformation_to_MNI: Transform Raw T1 MRI to Talairach-MNI template-SPM ( optional, output )

transformation_to_ACPC: Transform Raw T1 MRI to Talairach-AC/PC-Anatomist ( optional, output )

mni_to_acpc: Transformation matrix ( optional, input )

smoothing: Float ( input )

Technical information

Toolbox : Morphologist

User level : 2

Identifier : normalization_aimsmiregister

File name : brainvisa/toolboxes/morphologist/processes/registration/normalization_aimsmiregister.py

Supported file formats :

anatomy_data :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

anatomical_template :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

transformation_to_template :

Transformation matrix

normalized_anatomy_data :

GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

transformation_to_MNI :

Transformation matrix

transformation_to_ACPC :

Transformation matrix

mni_to_acpc :

Transformation matrix