Skull-stripped brain normalization

None

Parameters

t1mri: Raw T1 MRI ( input )

brain_mask: Brain Mask ( input )

template: anatomical Template ( input )

skull_stripped: 3D Volume ( output )

transformation: Transform Raw T1 MRI to Talairach-MNI template-SPM ( output )

Technical information

Toolbox : Morphologist

User level : 2

Identifier : normalization_skullstripped

File name : brainvisa/toolboxes/morphologist/processes/registration/normalization_skullstripped.py

Supported file formats :

t1mri :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

brain_mask :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

template :

NIFTI-1 image, MINC image, SPM image

skull_stripped :

GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

transformation :

Transformation matrix