segment/normalize (using SPM segmentation)

None

Parameters

MRI_Nat: T1 MRI ( input )
analysis: Analysis Dir ( output )
MRI_Mni_tpmSeg: grey probability map ( input )
spmJobName: String ( input )
GM: Choice ( input )
grey_nat: T1 MRI Nat GreyProba ( optional, output )
grey_Mni: T1 MRI Mni GreyProba ( output )
WM: Choice ( input )
white_Nat: T1 MRI Nat WhiteProba ( output )
CSF: Choice ( input )
csf_Nat: T1 MRI Nat CSFProba ( output )
biasreg: Choice ( input )
biascor: Choice ( input )
biasCorrected: T1 MRI Bias Corrected ( optional, output )
cleanup: Choice ( input )
ngaus: String ( input )
regtype: Choice ( input )
warpreg: String ( input )
warpco: String ( input )
biasfwhm: Choice ( input )
samp: String ( input )
msk: String ( input )
snMat: Mat T1 MRI from Native to Mni ( output )
snInvMat: Mat T1 MRI from Mni to Native ( output )

Technical information

Toolbox : Tools

User level : 0

Identifier : segment_SPM

File name : brainvisa/toolboxes/tools/processes/spm/segment_SPM.py

Supported file formats :

MRI_Nat :
NIFTI-1 image
analysis :
Directory
MRI_Mni_tpmSeg :
NIFTI-1 image
grey_nat :
NIFTI-1 image
grey_Mni :
NIFTI-1 image
white_Nat :
NIFTI-1 image
csf_Nat :
NIFTI-1 image
biasCorrected :
NIFTI-1 image
snMat :
Matlab file
snInvMat :
Matlab file