segment/normalize (using SPM New Segmentation)

None

Parameters

MRI_Nat: T1 MRI ( input )

analysis: Analysis Dir ( output )

MRI_Mni_tpmSeg: tissue probability map ( input )

spmJobName: String ( input )

c_biasreg: Choice ( input )

c_biasfwhm: Choice ( input )

grey_ngaus: Choice ( input )

grey_native_space: Choice ( input )

grey_native: T1 MRI Nat GreyProba ( output )

grey_native_dartel: T1 MRI Nat GreyProba ( output )

grey_warped: Choice ( input )

grey_mni_unmodulated: T1 MRI Mni GreyProba ( output )

grey_mni_modulated: T1 MRI Mni GreyProba ( output )

white_ngaus: Choice ( input )

white_native_space: Choice ( input )

white_native: T1 MRI Nat WhiteProba ( output )

white_native_dartel: T1 MRI Nat WhiteProba ( output )

white_warped: Choice ( input )

white_mni_unmodulated: T1 MRI Mni WhiteProba ( output )

white_mni_modulated: T1 MRI Mni WhiteProba ( output )

csf_ngaus: Choice ( input )

csf_native_space: Choice ( input )

csf_native: T1 MRI Nat CSFProba ( output )

csf_native_dartel: T1 MRI Nat CSFProba ( output )

csf_warped: Choice ( input )

csf_mni_unmodulated: T1 MRI Mni CSFProba ( output )

csf_mni_modulated: T1 MRI Mni CSFProba ( output )

bone_ngaus: Choice ( input )

bone_native_space: Choice ( input )

bone_native: T1 MRI Nat SkullProba ( output )

bone_native_dartel: T1 MRI Nat SkullProba ( output )

bone_warped: Choice ( input )

bone_mni_unmodulated: T1 MRI Mni SkullProba ( output )

bone_mni_modulated: T1 MRI Mni SkullProba ( output )

softTissue_ngaus: Choice ( input )

softTissue_native_space: Choice ( input )

softTissue_native: T1 MRI Nat ScalpProba ( output )

softTissue_native_dartel: T1 MRI Nat ScalpProba ( output )

softTissue_warped: Choice ( input )

softTissue_mni_unmodulated: T1 MRI Mni ScalpProba ( output )

softTissue_mni_modulated: T1 MRI Mni ScalpProba ( output )

airAndBackground_ngaus: Choice ( input )

airAndBackground_native_space: Choice ( input )

airAndBackground_warped: Choice ( input )

write_field: Choice ( input )

deFld: DefField T1 MRI from Native to Mni ( output )

invDeFld: DefField T1 MRI from Mni to Native ( output )

deFld_segMat: MatDefField T1 MRI from Native to Mni ( output )

c_write: Choice ( input )

biasCorrected: T1 MRI Bias Corrected ( optional, output )

w_mrf: String ( input )

w_reg: String ( input )

w_affreg: Choice ( input )

w_samp: String ( input )

Technical information

Toolbox : Tools

User level : 0

Identifier : segment_SPMNewSeg

File name : brainvisa/toolboxes/tools/processes/spm/segment_SPMNewSeg.py

Supported file formats :

MRI_Nat :

NIFTI-1 image

analysis :

Directory

MRI_Mni_tpmSeg :

NIFTI-1 image

grey_native :

NIFTI-1 image

grey_native_dartel :

NIFTI-1 image

grey_mni_unmodulated :

NIFTI-1 image

grey_mni_modulated :

NIFTI-1 image

white_native :

NIFTI-1 image

white_native_dartel :

NIFTI-1 image

white_mni_unmodulated :

NIFTI-1 image

white_mni_modulated :

NIFTI-1 image

csf_native :

NIFTI-1 image

csf_native_dartel :

NIFTI-1 image

csf_mni_unmodulated :

NIFTI-1 image

csf_mni_modulated :

NIFTI-1 image

bone_native :

NIFTI-1 image

bone_native_dartel :

NIFTI-1 image

bone_mni_unmodulated :

NIFTI-1 image

bone_mni_modulated :

NIFTI-1 image

softTissue_native :

NIFTI-1 image

softTissue_native_dartel :

NIFTI-1 image

softTissue_mni_unmodulated :

NIFTI-1 image

softTissue_mni_modulated :

NIFTI-1 image

deFld :

NIFTI-1 image

invDeFld :

NIFTI-1 image

deFld_segMat :

Matlab file

biasCorrected :

NIFTI-1 image