segment/normalize (using VBM toolboxe)

None

Parameters

MRI_Nat: T1 MRI ( input )

analysis: Analysis Dir ( output )

MRI_Mni_tpmSeg: tissue probability map ( input )

spmJobName: String ( input )

ngaus: String ( input )

biasreg: Choice ( input )

biasfwhm: Choice ( input )

affreg: Choice ( input )

warpreg: String ( input )

samp: String ( input )

norm: Choice ( input )

DartelTemplate: Dartel Template ( optional, output )

sanlm: Choice ( input )

mrf: String ( input )

cleanup: Choice ( input )

pprint: String ( input )

grey_native: Choice ( input )

grey_nat: T1 MRI Nat GreyProba ( output )

grey_warped: Choice ( input )

grey_Mni: T1 MRI Mni GreyProba ( output )

grey_modulated: Choice ( input )

grey_dartel: Choice ( input )

wm_native: Choice ( input )

white_Nat: T1 MRI Nat WhiteProba ( output )

wm_warped: Choice ( input )

wm_modulated: Choice ( input )

wm_dartel: Choice ( input )

csf_native: Choice ( input )

csf_Nat: T1 MRI Nat CSFProba ( output )

csf_warped: Choice ( input )

csf_modulated: Choice ( input )

csf_dartel: Choice ( input )

deFld: DefField T1 MRI from Native to Mni ( output )

invDeFld: DefField T1 MRI from Mni to Native ( output )

deFld_segMat: MatDefField T1 MRI from Native to Mni ( output )

saveBias: Choice ( input )

biasCorrected: T1 MRI Bias Corrected ( optional, output )

generateJacobianDeterminant: Choice ( input )

jacobianDeterminant: JacobianDeterminant ( output )

Technical information

Toolbox : Tools

User level : 0

Identifier : segment_VBM

File name : brainvisa/toolboxes/tools/processes/spm/segment_VBM.py

Supported file formats :

MRI_Nat :

NIFTI-1 image

analysis :

Directory

MRI_Mni_tpmSeg :

NIFTI-1 image

DartelTemplate :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

grey_nat :

NIFTI-1 image

grey_Mni :

NIFTI-1 image

white_Nat :

NIFTI-1 image

csf_Nat :

NIFTI-1 image

deFld :

NIFTI-1 image

invDeFld :

NIFTI-1 image

deFld_segMat :

Matlab file

biasCorrected :

NIFTI-1 image

jacobianDeterminant :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image