Ajout du référentiel du scanner

Process to manage the scanner based referential which is sometimes stored in the header of data files.

Description

This process is especially useful in the case of freesurfer data, to manage raw input data (mri/orig.nii) and resampled data (mri/ori/001.nii) with correspondance between their coordinate systems.

This process adds new referentials in the brainvisa manager of transformations and creates a transformation from the volume to the scanner based referential.

Then, in order to link two scanner based referentials between them, see the MergeReferentials process.

Paramètres

volume_input: IRM T1 ( entrée )

referential_volume_input: Referential of Raw T1 MRI ( sortie )

T1_TO_Scanner_Based: Transformation to Scanner Based Referential ( sortie )

new_referential: Scanner Based Referential ( sortie )

Informations techniques

Toolbox : Outils

Niveau d'utilisateur : 2

Identifiant : AddScannerBasedReferential

Nom de fichier : brainvisa/toolboxes/tools/processes/registration/AddScannerBasedReferential.py

Supported file formats :

volume_input :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

referential_volume_input :

Referential

T1_TO_Scanner_Based :

Transformation matrix

new_referential :

Referential