Pipeline de normalisation SPM

Description

This small pipeline will use SPM to perform an anatomical normalization, and then convert the SPM normalization matrix into a Morphologist-compatible one. If needed and allowed, it can also reorient the initial anatomica image if it was incorrectly oriented.

Please read the docs of the SPM normalization processes for details and possible issues.

Param�tres

t1mri: Raw T1 MRI ( entr�e )
transformation: Transform Raw T1 MRI to Talairach-MNI template-SPM ( sortie )
spm_transformation: SPM2 normalization matrix ( sortie )
normalized_t1mri: Raw T1 MRI ( sortie )
template: anatomical Template ( entr�e )
allow_flip_initial_MRI: Bool�en ( input )
allow_retry_initialization: Bool�en ( input )

Informations techniques

Toolbox : Morphologist

Niveau d'utilisateur : 1

Identifiant : SPMnormalizationPipeline

Nom de fichier : brainvisa/toolboxes/morphologist/processes/registration/SPMnormalizationPipeline.py

Supported file formats :

t1mri :
NIFTI-1 image, gz compressed NIFTI-1 image, SPM image
transformation :
Transformation matrix
spm_transformation :
Matlab file
normalized_t1mri :
NIFTI-1 image, SPM image
template :
NIFTI-1 image, MINC image, gz compressed NIFTI-1 image